Wall clock time and date at job start Tue Mar 31 2020 02:51:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30995 * 1
3 3 C 1.50698 * 120.00317 * 2 1
4 4 N 1.46502 * 109.47256 * 122.25344 * 3 2 1
5 5 C 1.35534 * 125.67711 * 264.44828 * 4 3 2
6 6 C 1.35450 * 108.86709 * 180.26331 * 5 4 3
7 7 C 1.39828 * 107.86960 * 359.77151 * 6 5 4
8 8 C 1.37651 * 125.67577 * 84.32157 * 4 3 2
9 9 C 1.46670 * 126.23381 * 359.97438 * 8 4 3
10 10 O 1.21693 * 120.00484 * 40.88684 * 9 8 4
11 11 N 1.34786 * 120.00130 * 220.88330 * 9 8 4
12 12 C 1.46963 * 120.59557 * 185.18036 * 11 9 8
13 13 C 1.53364 * 108.63279 * 235.20090 * 12 11 9
14 14 N 1.46966 * 108.63853 * 310.57685 * 13 12 11
15 15 C 1.36931 * 120.59223 * 235.20286 * 14 13 12
16 16 H 1.08007 * 120.00058 * 32.10130 * 15 14 13
17 17 C 1.38814 * 119.99955 * 212.37405 * 15 14 13
18 18 N 1.31618 * 119.99811 * 11.71028 * 17 15 14
19 19 Si 1.86803 * 120.00205 * 191.71288 * 17 15 14
20 20 H 1.48500 * 109.47014 * 59.99395 * 19 17 15
21 21 H 1.48492 * 109.47397 * 179.97438 * 19 17 15
22 22 H 1.48500 * 109.46821 * 300.00030 * 19 17 15
23 23 C 1.46962 * 118.81119 * 55.47869 * 14 13 12
24 24 C 1.46960 * 120.59072 * 5.15457 * 11 9 8
25 25 H 1.08004 * 120.00301 * 180.02562 * 1 2 3
26 26 H 1.07994 * 120.00090 * 359.97438 * 1 2 3
27 27 H 1.08005 * 120.00085 * 180.02562 * 2 1 3
28 28 H 1.09002 * 109.46723 * 2.25156 * 3 2 1
29 29 H 1.09004 * 109.47210 * 242.25463 * 3 2 1
30 30 H 1.07999 * 125.56444 * 0.07925 * 5 4 3
31 31 H 1.08008 * 126.06477 * 179.74564 * 6 5 4
32 32 H 1.08004 * 126.45756 * 179.97438 * 7 6 5
33 33 H 1.08998 * 109.60535 * 115.45595 * 12 11 9
34 34 H 1.09003 * 109.61002 * 354.94884 * 12 11 9
35 35 H 1.09000 * 109.60982 * 190.83140 * 13 12 11
36 36 H 1.09002 * 109.60628 * 70.32385 * 13 12 11
37 37 H 0.96996 * 119.99852 * 180.02562 * 18 17 15
38 38 H 1.09001 * 109.60783 * 64.26501 * 23 14 13
39 39 H 1.08996 * 109.60923 * 184.77476 * 23 14 13
40 40 H 1.09002 * 109.61350 * 244.54035 * 24 11 9
41 41 H 1.08998 * 109.61408 * 5.05679 * 24 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3050 0.0000
4 7 2.9461 1.3594 1.1681
5 6 2.6535 1.9485 2.3531
6 6 3.7104 1.8025 3.1876
7 6 4.7016 1.0913 2.5043
8 6 4.2095 0.8184 1.2456
9 6 4.9072 0.0895 0.1811
10 8 4.8357 0.4776 -0.9701
11 7 5.6277 -1.0103 0.4779
12 6 6.4233 -1.6851 -0.5572
13 6 6.0012 -3.1583 -0.6169
14 7 6.0057 -3.7038 0.7478
15 6 6.7377 -4.8211 1.0493
16 1 7.6643 -5.0161 0.5297
17 6 6.2859 -5.7061 2.0187
18 7 5.0585 -5.6037 2.4825
19 14 7.4202 -7.0423 2.6649
20 1 8.6198 -6.4188 3.2793
21 1 6.7041 -7.8484 3.6859
22 1 7.8386 -7.9213 1.5436
23 6 5.2057 -3.0323 1.7816
24 6 5.6322 -1.5557 1.8425
25 1 -0.5401 -0.9353 0.0004
26 1 -0.5400 0.9352 0.0004
27 1 1.8500 -0.9353 -0.0004
28 1 1.3559 2.1331 0.0404
29 1 2.6595 1.3805 -0.9095
30 1 1.7298 2.4546 2.5919
31 1 3.7761 2.1705 4.2009
32 1 5.6703 0.8093 2.8896
33 1 7.4819 -1.6177 -0.3068
34 1 6.2425 -1.2133 -1.5231
35 1 6.7044 -3.7156 -1.2359
36 1 4.9988 -3.2349 -1.0382
37 1 4.7429 -6.2219 3.1601
38 1 4.1479 -3.1001 1.5271
39 1 5.3833 -3.5062 2.7469
40 1 6.6346 -1.4791 2.2638
41 1 4.9290 -0.9986 2.4615
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000490022161.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:51:49
Heat of formation + Delta-G solvation = 74.005507 kcal
Electronic energy + Delta-G solvation = -23587.318298 eV
Core-core repulsion = 20276.975686 eV
Total energy + Delta-G solvation = -3310.342611 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.33268 -39.02087 -36.69136 -35.30940 -33.84487 -31.66353 -31.17878 -30.26038
-28.99721 -26.81510 -26.07362 -23.93436 -22.87532 -21.90345 -20.62621 -20.28409
-19.77601 -18.59624 -17.42616 -16.44871 -15.83747 -15.54947 -15.21975 -14.83194
-14.72933 -14.26448 -13.79829 -13.64500 -13.41649 -13.33450 -13.19010 -12.98515
-12.66465 -12.28977 -12.14734 -11.88229 -11.57523 -11.37627 -11.19978 -10.83015
-10.72490 -10.51501 -10.22195 -10.05723 -9.87091 -9.75586 -9.50758 -8.61789
-8.57326 -8.28782 -7.96797 -6.65108 -5.84666 -3.34818 1.78807 1.91783
2.79352 2.94740 3.34899 3.40628 3.41341 3.52177 3.64383 4.44077
4.57969 4.71486 4.85803 5.08849 5.14319 5.33426 5.37324 5.40261
5.53646 5.59374 5.72747 5.84943 5.89919 5.96248 6.15802 6.20087
6.25486 6.27842 6.39030 6.41429 6.45553 6.47547 6.77215 6.87979
6.99516 7.12590 7.25315 7.32927 7.50087 7.71962 7.90129 8.39415
8.52186 9.13625 9.74169 10.33486 11.22619
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.019742 B = 0.004538 C = 0.004506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1417.940838 B = 6167.972471 C = 6212.281410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.170 4.170
3 C 0.125 3.875
4 N -0.409 5.409
5 C 0.005 3.995
6 C -0.206 4.206
7 C -0.147 4.147
8 C -0.031 4.031
9 C 0.581 3.419
10 O -0.564 6.564
11 N -0.580 5.580
12 C 0.097 3.903
13 C 0.132 3.868
14 N -0.591 5.591
15 C -0.258 4.258
16 H 0.066 0.934
17 C 0.007 3.993
18 N -0.904 5.904
19 Si 0.906 3.094
20 H -0.282 1.282
21 H -0.290 1.290
22 H -0.282 1.282
23 C 0.162 3.838
24 C 0.069 3.931
25 H 0.105 0.895
26 H 0.098 0.902
27 H 0.117 0.883
28 H 0.093 0.907
29 H 0.111 0.889
30 H 0.163 0.837
31 H 0.140 0.860
32 H 0.144 0.856
33 H 0.065 0.935
34 H 0.082 0.918
35 H 0.067 0.933
36 H 0.022 0.978
37 H 0.256 0.744
38 H 0.021 0.979
39 H 0.100 0.900
40 H 0.063 0.937
41 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.993 13.857 -0.429 15.103
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.189 4.189
3 C 0.005 3.995
4 N -0.082 5.082
5 C -0.129 4.129
6 C -0.230 4.230
7 C -0.173 4.173
8 C -0.145 4.145
9 C 0.369 3.631
10 O -0.445 6.445
11 N -0.311 5.311
12 C -0.027 4.027
13 C 0.005 3.995
14 N -0.314 5.314
15 C -0.387 4.387
16 H 0.083 0.917
17 C -0.192 4.192
18 N -0.548 5.548
19 Si 0.736 3.264
20 H -0.209 1.209
21 H -0.216 1.216
22 H -0.208 1.208
23 C 0.035 3.965
24 C -0.054 4.054
25 H 0.123 0.877
26 H 0.116 0.884
27 H 0.135 0.865
28 H 0.112 0.888
29 H 0.129 0.871
30 H 0.181 0.819
31 H 0.158 0.842
32 H 0.162 0.838
33 H 0.083 0.917
34 H 0.100 0.900
35 H 0.085 0.915
36 H 0.040 0.960
37 H 0.066 0.934
38 H 0.039 0.961
39 H 0.118 0.882
40 H 0.082 0.918
41 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -6.306 13.879 -1.230 15.294
hybrid contribution 0.444 -0.831 0.516 1.074
sum -5.862 13.047 -0.715 14.322
Atomic orbital electron populations
1.23887 0.95428 1.02272 0.99231 1.23190 0.96336 0.98525 1.00827
1.21127 0.93107 0.96642 0.88668 1.43921 1.11885 1.40900 1.11518
1.21875 1.01181 1.04279 0.85579 1.20763 0.94515 1.07383 1.00312
1.21347 1.00580 1.03338 0.91989 1.20148 0.88439 1.08527 0.97383
1.17116 0.79172 0.80155 0.86643 1.90729 1.64546 1.68356 1.20908
1.47827 1.45871 1.25141 1.12248 1.22265 0.94277 0.95167 0.91015
1.21298 0.98559 0.90750 0.88877 1.43971 1.54971 1.29715 1.02734
1.19150 1.00638 0.98440 1.20482 0.91678 1.25196 0.95469 0.97389
1.01178 1.69953 1.14728 1.38680 1.31428 0.86318 0.80024 0.81560
0.78509 1.20856 1.21577 1.20816 1.21248 0.93054 0.86382 0.95767
1.23093 1.01876 0.99011 0.81447 0.87678 0.88393 0.86548 0.88832
0.87053 0.81929 0.84225 0.83829 0.91713 0.89957 0.91454 0.95999
0.93401 0.96091 0.88236 0.91819 0.89483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.72 14.32 29.02 0.42 -1.30 16
2 C -0.17 -2.15 9.85 -36.03 -0.35 -2.51 16
3 C 0.13 1.54 6.27 -5.19 -0.03 1.51 16
4 N -0.41 -5.79 2.74 -114.15 -0.31 -6.10 16
5 C 0.00 0.06 11.37 -16.91 -0.19 -0.14 16
6 C -0.21 -2.60 10.81 -39.98 -0.43 -3.03 16
7 C -0.15 -2.16 8.44 -39.12 -0.33 -2.49 16
8 C -0.03 -0.52 5.99 -81.98 -0.49 -1.01 16
9 C 0.58 10.93 7.35 -12.85 -0.09 10.84 16
10 O -0.56 -11.63 15.05 5.19 0.08 -11.56 16
11 N -0.58 -11.01 2.95 -173.76 -0.51 -11.52 16
12 C 0.10 1.81 6.60 -3.60 -0.02 1.79 16
13 C 0.13 2.80 6.67 -3.60 -0.02 2.78 16
14 N -0.59 -14.52 2.95 -171.77 -0.51 -15.03 16
15 C -0.26 -6.86 9.56 -15.06 -0.14 -7.00 16
16 H 0.07 1.70 7.86 -52.48 -0.41 1.28 16
17 C 0.01 0.18 5.02 -17.43 -0.09 0.09 16
18 N -0.90 -25.53 11.13 55.49 0.62 -24.91 16
19 Si 0.91 21.12 29.57 -169.99 -5.03 16.09 16
20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
23 C 0.16 3.77 5.49 -3.37 -0.02 3.75 16
24 C 0.07 1.31 5.70 -3.37 -0.02 1.29 16
25 H 0.10 1.01 8.06 -52.48 -0.42 0.58 16
26 H 0.10 0.77 7.83 -52.49 -0.41 0.36 16
27 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16
28 H 0.09 0.84 7.77 -51.93 -0.40 0.44 16
29 H 0.11 1.56 6.74 -51.93 -0.35 1.21 16
30 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16
31 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16
32 H 0.14 1.98 7.34 -52.48 -0.39 1.59 16
33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16
34 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16
35 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16
36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
39 H 0.10 2.54 6.11 -51.93 -0.32 2.22 16
40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
41 H 0.09 1.52 4.70 -51.93 -0.24 1.27 16
LS Contribution 335.53 15.07 5.06 5.06
Total: -1.00 -31.05 335.53 -8.25 -39.30
By element:
Atomic # 1 Polarization: 9.91 SS G_CDS: -5.82 Total: 4.10 kcal
Atomic # 6 Polarization: 6.39 SS G_CDS: -1.83 Total: 4.57 kcal
Atomic # 7 Polarization: -56.85 SS G_CDS: -0.71 Total: -57.56 kcal
Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.56 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -31.05 -8.25 -39.30 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490022161.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.305 kcal
(2) G-P(sol) polarization free energy of solvation -31.050 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.256 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds