Wall clock time and date at job start Tue Mar 31 2020 02:51:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30995 * 1
3 3 C 1.50698 * 120.00317 * 2 1
4 4 N 1.46502 * 109.47256 * 122.25344 * 3 2 1
5 5 C 1.35534 * 125.67711 * 264.44828 * 4 3 2
6 6 C 1.35450 * 108.86709 * 180.26331 * 5 4 3
7 7 C 1.39828 * 107.86960 * 359.77151 * 6 5 4
8 8 C 1.37651 * 125.67577 * 84.32157 * 4 3 2
9 9 C 1.46670 * 126.23381 * 359.97438 * 8 4 3
10 10 O 1.21693 * 120.00484 * 40.88684 * 9 8 4
11 11 N 1.34786 * 120.00130 * 220.88330 * 9 8 4
12 12 C 1.46963 * 120.59557 * 185.18036 * 11 9 8
13 13 C 1.53364 * 108.63279 * 235.20090 * 12 11 9
14 14 N 1.46966 * 108.63853 * 310.57685 * 13 12 11
15 15 C 1.36931 * 120.59223 * 235.20286 * 14 13 12
16 16 H 1.08007 * 120.00058 * 32.10130 * 15 14 13
17 17 C 1.38814 * 119.99955 * 212.37405 * 15 14 13
18 18 N 1.31618 * 119.99811 * 11.71028 * 17 15 14
19 19 Si 1.86803 * 120.00205 * 191.71288 * 17 15 14
20 20 H 1.48500 * 109.47014 * 59.99395 * 19 17 15
21 21 H 1.48492 * 109.47397 * 179.97438 * 19 17 15
22 22 H 1.48500 * 109.46821 * 300.00030 * 19 17 15
23 23 C 1.46962 * 118.81119 * 55.47869 * 14 13 12
24 24 C 1.46960 * 120.59072 * 5.15457 * 11 9 8
25 25 H 1.08004 * 120.00301 * 180.02562 * 1 2 3
26 26 H 1.07994 * 120.00090 * 359.97438 * 1 2 3
27 27 H 1.08005 * 120.00085 * 180.02562 * 2 1 3
28 28 H 1.09002 * 109.46723 * 2.25156 * 3 2 1
29 29 H 1.09004 * 109.47210 * 242.25463 * 3 2 1
30 30 H 1.07999 * 125.56444 * 0.07925 * 5 4 3
31 31 H 1.08008 * 126.06477 * 179.74564 * 6 5 4
32 32 H 1.08004 * 126.45756 * 179.97438 * 7 6 5
33 33 H 1.08998 * 109.60535 * 115.45595 * 12 11 9
34 34 H 1.09003 * 109.61002 * 354.94884 * 12 11 9
35 35 H 1.09000 * 109.60982 * 190.83140 * 13 12 11
36 36 H 1.09002 * 109.60628 * 70.32385 * 13 12 11
37 37 H 0.96996 * 119.99852 * 180.02562 * 18 17 15
38 38 H 1.09001 * 109.60783 * 64.26501 * 23 14 13
39 39 H 1.08996 * 109.60923 * 184.77476 * 23 14 13
40 40 H 1.09002 * 109.61350 * 244.54035 * 24 11 9
41 41 H 1.08998 * 109.61408 * 5.05679 * 24 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3050 0.0000
4 7 2.9461 1.3594 1.1681
5 6 2.6535 1.9485 2.3531
6 6 3.7104 1.8025 3.1876
7 6 4.7016 1.0913 2.5043
8 6 4.2095 0.8184 1.2456
9 6 4.9072 0.0895 0.1811
10 8 4.8357 0.4776 -0.9701
11 7 5.6277 -1.0103 0.4779
12 6 6.4233 -1.6851 -0.5572
13 6 6.0012 -3.1583 -0.6169
14 7 6.0057 -3.7038 0.7478
15 6 6.7377 -4.8211 1.0493
16 1 7.6643 -5.0161 0.5297
17 6 6.2859 -5.7061 2.0187
18 7 5.0585 -5.6037 2.4825
19 14 7.4202 -7.0423 2.6649
20 1 8.6198 -6.4188 3.2793
21 1 6.7041 -7.8484 3.6859
22 1 7.8386 -7.9213 1.5436
23 6 5.2057 -3.0323 1.7816
24 6 5.6322 -1.5557 1.8425
25 1 -0.5401 -0.9353 0.0004
26 1 -0.5400 0.9352 0.0004
27 1 1.8500 -0.9353 -0.0004
28 1 1.3559 2.1331 0.0404
29 1 2.6595 1.3805 -0.9095
30 1 1.7298 2.4546 2.5919
31 1 3.7761 2.1705 4.2009
32 1 5.6703 0.8093 2.8896
33 1 7.4819 -1.6177 -0.3068
34 1 6.2425 -1.2133 -1.5231
35 1 6.7044 -3.7156 -1.2359
36 1 4.9988 -3.2349 -1.0382
37 1 4.7429 -6.2219 3.1601
38 1 4.1479 -3.1001 1.5271
39 1 5.3833 -3.5062 2.7469
40 1 6.6346 -1.4791 2.2638
41 1 4.9290 -0.9986 2.4615
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000490022161.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:51:48
Heat of formation + Delta-G solvation = 56.334349 kcal
Electronic energy + Delta-G solvation = -23588.084577 eV
Core-core repulsion = 20276.975686 eV
Total energy + Delta-G solvation = -3311.108890 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.43986 -40.48768 -38.38203 -36.29584 -35.58079 -33.39009 -32.29718 -31.96373
-30.29584 -28.54435 -27.02651 -25.70294 -24.54761 -23.41698 -21.75146 -21.34851
-21.14686 -19.97050 -18.91682 -17.94902 -17.48942 -16.73527 -16.64527 -16.41741
-16.14518 -15.50562 -15.34089 -15.24913 -15.01368 -14.86672 -14.60556 -14.10236
-13.84921 -13.56548 -13.42890 -13.22125 -12.95530 -12.85607 -12.66568 -12.51806
-12.27878 -12.26503 -12.05907 -11.91130 -11.70551 -11.08447 -10.62833 -10.58554
-9.90301 -9.63847 -9.09056 -8.62794 -7.88831 -5.43673 0.61684 0.99241
1.49606 1.51031 1.57854 1.61493 1.90029 2.25154 2.35905 2.51318
3.27153 3.53360 3.58815 3.70805 3.82633 4.19735 4.20807 4.21954
4.25516 4.35834 4.50213 4.53172 4.56387 4.59558 4.62820 4.75646
4.77900 4.87222 5.01433 5.18118 5.20812 5.30312 5.46976 5.48548
5.57719 5.60571 5.62878 5.91391 6.03851 6.35667 6.36927 6.42350
7.05354 7.10110 7.75383 8.31887 9.16033
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.019742 B = 0.004538 C = 0.004506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1417.940838 B = 6167.972471 C = 6212.281410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.203 4.203
3 C 0.128 3.872
4 N -0.414 5.414
5 C 0.023 3.977
6 C -0.215 4.215
7 C -0.147 4.147
8 C -0.077 4.077
9 C 0.581 3.419
10 O -0.589 6.589
11 N -0.588 5.588
12 C 0.106 3.894
13 C 0.133 3.867
14 N -0.607 5.607
15 C -0.269 4.269
16 H 0.070 0.930
17 C -0.043 4.043
18 N -0.936 5.936
19 Si 0.973 3.027
20 H -0.274 1.274
21 H -0.294 1.294
22 H -0.277 1.277
23 C 0.172 3.828
24 C 0.091 3.909
25 H 0.107 0.893
26 H 0.134 0.866
27 H 0.073 0.927
28 H 0.136 0.864
29 H 0.085 0.915
30 H 0.206 0.794
31 H 0.167 0.833
32 H 0.148 0.852
33 H 0.077 0.923
34 H 0.087 0.913
35 H 0.077 0.923
36 H 0.004 0.996
37 H 0.252 0.748
38 H -0.011 1.011
39 H 0.075 0.925
40 H 0.073 0.927
41 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.665 15.671 0.568 17.039
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.222 4.222
3 C 0.008 3.992
4 N -0.087 5.087
5 C -0.111 4.111
6 C -0.238 4.238
7 C -0.173 4.173
8 C -0.190 4.190
9 C 0.371 3.629
10 O -0.472 6.472
11 N -0.318 5.318
12 C -0.018 4.018
13 C 0.007 3.993
14 N -0.331 5.331
15 C -0.399 4.399
16 H 0.088 0.912
17 C -0.239 4.239
18 N -0.581 5.581
19 Si 0.800 3.200
20 H -0.199 1.199
21 H -0.220 1.220
22 H -0.203 1.203
23 C 0.045 3.955
24 C -0.032 4.032
25 H 0.125 0.875
26 H 0.152 0.848
27 H 0.091 0.909
28 H 0.153 0.847
29 H 0.103 0.897
30 H 0.223 0.777
31 H 0.185 0.815
32 H 0.165 0.835
33 H 0.095 0.905
34 H 0.106 0.894
35 H 0.096 0.904
36 H 0.022 0.978
37 H 0.061 0.939
38 H 0.007 0.993
39 H 0.094 0.906
40 H 0.091 0.909
41 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -6.964 15.707 -0.256 17.184
hybrid contribution 0.525 -1.360 0.170 1.468
sum -6.439 14.347 -0.086 15.726
Atomic orbital electron populations
1.24157 0.94295 1.04044 0.95035 1.22954 0.97246 0.97201 1.04811
1.21188 0.93053 0.97700 0.87224 1.44163 1.11290 1.40589 1.12697
1.22644 1.02250 1.02081 0.84174 1.21142 0.93936 1.07169 1.01594
1.21587 1.01242 1.02996 0.91500 1.19956 0.90342 1.11158 0.97578
1.17490 0.78515 0.79845 0.87009 1.90696 1.65210 1.69086 1.22231
1.47856 1.46321 1.25577 1.12071 1.22105 0.94851 0.93245 0.91549
1.21357 0.97922 0.92541 0.87489 1.44218 1.54858 1.29808 1.04169
1.19499 1.00984 0.98988 1.20448 0.91213 1.25955 0.96748 0.99601
1.01604 1.70124 1.16427 1.39569 1.31970 0.85272 0.78214 0.78797
0.77687 1.19934 1.22024 1.20281 1.21016 0.91267 0.88971 0.94226
1.22797 1.02594 0.95920 0.81938 0.87475 0.84844 0.90912 0.84654
0.89684 0.77717 0.81527 0.83478 0.90470 0.89429 0.90431 0.97800
0.93854 0.99257 0.90642 0.90859 0.87881
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.46 14.32 67.79 0.97 -1.49 16
2 C -0.20 -5.11 9.85 25.65 0.25 -4.85 16
3 C 0.13 3.01 6.27 85.63 0.54 3.54 16
4 N -0.41 -11.12 2.74 -515.07 -1.41 -12.53 16
5 C 0.02 0.47 11.37 83.48 0.95 1.42 16
6 C -0.22 -4.80 10.81 22.01 0.24 -4.56 16
7 C -0.15 -4.14 8.44 22.57 0.19 -3.95 16
8 C -0.08 -2.54 5.99 40.35 0.24 -2.29 16
9 C 0.58 22.36 7.35 86.44 0.64 23.00 16
10 O -0.59 -25.04 15.05 -4.33 -0.07 -25.11 16
11 N -0.59 -22.75 2.95 -821.87 -2.42 -25.17 16
12 C 0.11 4.04 6.60 86.41 0.57 4.61 16
13 C 0.13 5.81 6.67 86.41 0.58 6.39 16
14 N -0.61 -30.65 2.95 -697.35 -2.06 -32.71 16
15 C -0.27 -14.54 9.56 84.03 0.80 -13.73 16
16 H 0.07 3.63 7.86 -2.91 -0.02 3.61 16
17 C -0.04 -2.36 5.02 84.86 0.43 -1.93 16
18 N -0.94 -54.35 11.13 21.65 0.24 -54.11 16
19 Si 0.97 43.74 29.57 68.60 2.03 45.77 16
20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16
22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16
23 C 0.17 8.31 5.49 86.57 0.47 8.78 16
24 C 0.09 3.50 5.70 86.57 0.49 3.99 16
25 H 0.11 1.86 8.06 -2.91 -0.02 1.84 16
26 H 0.13 1.46 7.83 -2.91 -0.02 1.44 16
27 H 0.07 2.44 8.06 -2.91 -0.02 2.41 16
28 H 0.14 1.94 7.77 -2.39 -0.02 1.92 16
29 H 0.08 2.43 6.74 -2.38 -0.02 2.41 16
30 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16
31 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16
32 H 0.15 3.89 7.34 -2.91 -0.02 3.87 16
33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16
34 H 0.09 3.24 6.99 -2.39 -0.02 3.23 16
35 H 0.08 3.16 7.93 -2.39 -0.02 3.14 16
36 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16
37 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16
38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
39 H 0.08 4.01 6.11 -2.39 -0.01 4.00 16
40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16
41 H 0.10 3.63 4.70 -2.39 -0.01 3.62 16
Total: -1.00 -69.84 335.53 4.69 -65.15
By element:
Atomic # 1 Polarization: 18.76 SS G_CDS: 1.02 Total: 19.78 kcal
Atomic # 6 Polarization: 11.57 SS G_CDS: 7.36 Total: 18.92 kcal
Atomic # 7 Polarization: -118.86 SS G_CDS: -5.65 Total: -124.51 kcal
Atomic # 8 Polarization: -25.04 SS G_CDS: -0.07 Total: -25.11 kcal
Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal
Total: -69.84 4.69 -65.15 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490022161.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.488 kcal
(2) G-P(sol) polarization free energy of solvation -69.842 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.334 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds