Wall clock time and date at job start Tue Mar 31 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46588 * 115.84482 * 3 2 1 5 5 C 1.33331 * 120.00255 * 79.61945 * 4 3 2 6 6 H 1.07998 * 119.99977 * 315.41985 * 5 4 3 7 7 C 1.46788 * 120.00053 * 135.69147 * 5 4 3 8 8 N 1.29312 * 120.00001 * 351.51503 * 7 5 4 9 9 Si 1.86799 * 119.99793 * 171.50862 * 7 5 4 10 10 H 1.48503 * 109.47027 * 94.99871 * 9 7 5 11 11 H 1.48495 * 109.47084 * 214.99340 * 9 7 5 12 12 H 1.48501 * 109.47277 * 334.99839 * 9 7 5 13 13 C 1.34780 * 119.99974 * 259.61699 * 4 3 2 14 14 O 1.21474 * 119.99898 * 173.35669 * 13 4 3 15 15 C 1.47708 * 119.99939 * 353.35800 * 13 4 3 16 16 C 1.39612 * 120.12443 * 29.27899 * 15 13 4 17 17 C 1.38427 * 119.78438 * 179.97438 * 16 15 13 18 18 O 1.35910 * 119.98132 * 180.02562 * 17 16 15 19 19 C 1.38874 * 120.04189 * 359.97438 * 17 16 15 20 20 C 1.38266 * 120.25316 * 0.04498 * 19 17 16 21 21 N 1.48018 * 119.89456 * 179.97438 * 20 19 17 22 22 O 1.31699 * 119.99492 * 0.02562 * 21 20 19 23 23 O 1.31694 * 119.99756 * 179.97438 * 21 20 19 24 24 C 1.37987 * 120.21112 * 359.69804 * 20 19 17 25 25 H 4.40639 * 5.51398 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47371 * 355.84436 * 3 2 1 27 27 H 1.09003 * 109.46727 * 235.84069 * 3 2 1 28 28 H 0.97003 * 120.00025 * 185.02042 * 8 7 5 29 29 H 1.08001 * 120.10852 * 359.95104 * 16 15 13 30 30 H 0.96701 * 114.00397 * 89.99427 * 18 17 16 31 31 H 1.07998 * 119.87361 * 180.02562 * 19 17 16 32 32 H 1.08006 * 120.01559 * 180.29383 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.6030 -1.2431 5 6 3.1594 1.9294 -1.3761 6 1 2.3119 2.5201 -1.0608 7 6 4.3367 2.5864 -1.9566 8 7 5.4103 1.9035 -2.1869 9 14 4.2839 4.4090 -2.3626 10 1 4.8495 5.1851 -1.2299 11 1 5.0833 4.6666 -3.5872 12 1 2.8769 4.8242 -2.5934 13 6 3.5572 -0.1837 -2.2523 14 8 3.8475 0.3077 -3.3247 15 6 3.6681 -1.6432 -2.0544 16 6 2.8264 -2.2936 -1.1501 17 6 2.9361 -3.6618 -0.9706 18 8 2.1184 -4.2991 -0.0916 19 6 3.8802 -4.3838 -1.6887 20 6 4.7149 -3.7413 -2.5845 21 7 5.7188 -4.5186 -3.3454 22 8 5.8156 -5.8201 -3.1689 23 8 6.5144 -3.9087 -4.1994 24 6 4.6110 -2.3787 -2.7756 25 1 -1.0502 0.0001 0.0003 26 1 3.0098 -1.0241 0.0745 27 1 3.0090 0.5779 0.8504 28 1 6.2114 2.3508 -2.5018 29 1 2.0925 -1.7311 -0.5922 30 1 1.2919 -4.6153 -0.4815 31 1 3.9631 -5.4512 -1.5468 32 1 5.2614 -1.8807 -3.4796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490986524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:15 Heat of formation + Delta-G solvation = 85.734387 kcal Electronic energy + Delta-G solvation = -22559.116172 eV Core-core repulsion = 18879.897312 eV Total energy + Delta-G solvation = -3679.218860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.68557 -38.89859 -38.40676 -36.46848 -35.26374 -34.27896 -33.12963 -31.94369 -31.44871 -30.13344 -27.32194 -26.24207 -25.32473 -22.87876 -22.32215 -20.47284 -18.85380 -18.26548 -17.99333 -17.31121 -16.88322 -16.72666 -16.00202 -15.86514 -15.73162 -14.94498 -14.75077 -14.40080 -14.03584 -13.53962 -13.04189 -12.78190 -12.25144 -12.15515 -11.85099 -11.55749 -11.23861 -11.19854 -11.14633 -10.92170 -10.79571 -10.55326 -10.48468 -10.20774 -10.00998 -9.24830 -9.12464 -8.98723 -8.48998 -7.69573 -6.56004 -4.07459 -0.59039 0.78075 1.11353 1.22018 2.96221 3.01206 3.06626 3.11237 3.19088 3.21795 3.75777 3.96310 4.25899 4.38214 4.68274 4.70692 4.74260 4.83401 4.96978 5.06658 5.16832 5.51272 5.65984 5.74183 5.81952 5.96743 6.09799 6.16381 6.21722 6.36090 6.89540 7.16155 7.31201 7.83836 7.87678 8.51384 8.86365 9.18708 9.96825 10.47366 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.006033 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.162942 B = 4639.674631 C = 6224.574423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.183 4.183 3 C 0.159 3.841 4 N -0.405 5.405 5 C -0.369 4.369 6 H 0.089 0.911 7 C 0.069 3.931 8 N -0.785 5.785 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.264 1.264 13 C 0.487 3.513 14 O -0.521 6.521 15 C -0.073 4.073 16 C -0.112 4.112 17 C 0.106 3.894 18 O -0.485 6.485 19 C -0.093 4.093 20 C 0.003 3.997 21 N -0.013 5.013 22 O -0.183 6.183 23 O -0.164 6.164 24 C -0.011 4.011 25 H 0.214 0.786 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.279 0.721 29 H 0.178 0.822 30 H 0.395 0.605 31 H 0.156 0.844 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 -7.874 5.127 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.184 4.184 3 C 0.037 3.963 4 N -0.122 5.122 5 C -0.497 4.497 6 H 0.107 0.893 7 C -0.151 4.151 8 N -0.414 5.414 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.188 1.188 13 C 0.277 3.723 14 O -0.400 6.400 15 C -0.078 4.078 16 C -0.131 4.131 17 C 0.060 3.940 18 O -0.295 6.295 19 C -0.114 4.114 20 C -0.083 4.083 21 N 0.466 4.534 22 O -0.375 6.375 23 O -0.360 6.360 24 C -0.032 4.032 25 H 0.231 0.769 26 H 0.125 0.875 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.195 0.805 30 H 0.251 0.749 31 H 0.174 0.826 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.435 -7.154 5.170 10.924 hybrid contribution -0.123 0.374 -0.566 0.690 sum -6.558 -6.780 4.604 10.496 Atomic orbital electron populations 1.24816 0.95759 1.01393 1.01057 1.23840 0.95106 0.99662 0.99787 1.19788 0.83665 1.00776 0.92110 1.41975 1.55789 1.05802 1.08615 1.19948 1.00986 0.80765 1.47984 0.89333 1.26999 0.93900 0.99590 0.94638 1.68799 1.01651 1.38152 1.32762 0.85976 0.79167 0.81600 0.78204 1.20185 1.20460 1.18844 1.17489 0.86864 0.82839 0.85121 1.90620 1.51462 1.73280 1.24641 1.20558 0.94716 0.97585 0.94962 1.23175 1.00289 0.94081 0.95585 1.17915 0.93906 0.89885 0.92269 1.84873 1.33438 1.76130 1.35081 1.21212 0.94559 1.02222 0.93390 1.19973 0.95746 0.91364 1.01199 1.50442 1.00512 1.02868 0.99620 1.96232 1.77699 0.90774 1.72764 1.96305 1.38814 1.71621 1.29251 1.21276 0.95691 0.89677 0.96542 0.76908 0.87473 0.88672 0.90895 0.80515 0.74859 0.82597 0.81683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.98 19.25 29.55 0.57 -2.42 16 2 C -0.18 -3.02 11.76 -37.12 -0.44 -3.45 16 3 C 0.16 2.85 5.38 -6.83 -0.04 2.81 16 4 N -0.41 -9.35 2.47 -117.50 -0.29 -9.64 16 5 C -0.37 -9.33 9.24 -13.45 -0.12 -9.46 16 6 H 0.09 2.19 7.95 -52.49 -0.42 1.78 16 7 C 0.07 1.76 4.85 -15.16 -0.07 1.69 16 8 N -0.79 -21.07 11.35 56.00 0.64 -20.43 16 9 Si 0.93 19.84 29.66 -169.99 -5.04 14.80 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 13 C 0.49 11.63 6.56 -12.39 -0.08 11.55 16 14 O -0.52 -14.57 14.45 5.39 0.08 -14.49 16 15 C -0.07 -1.39 5.61 -104.99 -0.59 -1.98 16 16 C -0.11 -1.71 7.46 -39.00 -0.29 -2.00 16 17 C 0.11 1.37 6.70 -39.28 -0.26 1.11 16 18 O -0.49 -4.97 13.50 -19.46 -0.26 -5.23 16 19 C -0.09 -1.28 9.51 -39.34 -0.37 -1.66 16 20 C 0.00 0.06 6.88 -80.03 -0.55 -0.49 16 21 N -0.01 -0.24 4.98 33.92 0.17 -0.07 16 22 O -0.18 -3.21 19.14 -31.57 -0.60 -3.81 16 23 O -0.16 -3.20 19.14 -31.56 -0.60 -3.80 16 24 C -0.01 -0.21 9.12 -39.15 -0.36 -0.57 16 25 H 0.21 2.11 7.80 -54.08 -0.42 1.69 16 26 H 0.11 1.73 3.79 -55.14 -0.21 1.52 16 27 H 0.10 1.64 8.11 -51.93 -0.42 1.22 16 28 H 0.28 7.03 8.27 -40.82 -0.34 6.69 16 29 H 0.18 2.60 3.22 -52.49 -0.17 2.43 16 30 H 0.39 2.05 9.06 45.56 0.41 2.46 16 31 H 0.16 1.85 7.56 -52.49 -0.40 1.45 16 32 H 0.17 3.32 7.41 -52.48 -0.39 2.94 16 LS Contribution 301.51 15.07 4.54 4.54 Total: -1.00 -31.86 301.51 -5.13 -36.99 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -1.14 Total: 6.01 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.61 Total: -4.86 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.51 Total: -30.14 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.39 Total: -27.34 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.04 Total: 14.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.86 -5.13 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.720 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds