Wall clock time and date at job start Tue Mar 31 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46588 * 115.84482 * 3 2 1 5 5 C 1.33331 * 120.00255 * 79.61945 * 4 3 2 6 6 H 1.07998 * 119.99977 * 315.41985 * 5 4 3 7 7 C 1.46788 * 120.00053 * 135.69147 * 5 4 3 8 8 N 1.29312 * 120.00001 * 351.51503 * 7 5 4 9 9 Si 1.86799 * 119.99793 * 171.50862 * 7 5 4 10 10 H 1.48503 * 109.47027 * 94.99871 * 9 7 5 11 11 H 1.48495 * 109.47084 * 214.99340 * 9 7 5 12 12 H 1.48501 * 109.47277 * 334.99839 * 9 7 5 13 13 C 1.34780 * 119.99974 * 259.61699 * 4 3 2 14 14 O 1.21474 * 119.99898 * 173.35669 * 13 4 3 15 15 C 1.47708 * 119.99939 * 353.35800 * 13 4 3 16 16 C 1.39612 * 120.12443 * 29.27899 * 15 13 4 17 17 C 1.38427 * 119.78438 * 179.97438 * 16 15 13 18 18 O 1.35910 * 119.98132 * 180.02562 * 17 16 15 19 19 C 1.38874 * 120.04189 * 359.97438 * 17 16 15 20 20 C 1.38266 * 120.25316 * 0.04498 * 19 17 16 21 21 N 1.48018 * 119.89456 * 179.97438 * 20 19 17 22 22 O 1.31699 * 119.99492 * 0.02562 * 21 20 19 23 23 O 1.31694 * 119.99756 * 179.97438 * 21 20 19 24 24 C 1.37987 * 120.21112 * 359.69804 * 20 19 17 25 25 H 4.40639 * 5.51398 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47371 * 355.84436 * 3 2 1 27 27 H 1.09003 * 109.46727 * 235.84069 * 3 2 1 28 28 H 0.97003 * 120.00025 * 185.02042 * 8 7 5 29 29 H 1.08001 * 120.10852 * 359.95104 * 16 15 13 30 30 H 0.96701 * 114.00397 * 89.99427 * 18 17 16 31 31 H 1.07998 * 119.87361 * 180.02562 * 19 17 16 32 32 H 1.08006 * 120.01559 * 180.29383 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.6030 -1.2431 5 6 3.1594 1.9294 -1.3761 6 1 2.3119 2.5201 -1.0608 7 6 4.3367 2.5864 -1.9566 8 7 5.4103 1.9035 -2.1869 9 14 4.2839 4.4090 -2.3626 10 1 4.8495 5.1851 -1.2299 11 1 5.0833 4.6666 -3.5872 12 1 2.8769 4.8242 -2.5934 13 6 3.5572 -0.1837 -2.2523 14 8 3.8475 0.3077 -3.3247 15 6 3.6681 -1.6432 -2.0544 16 6 2.8264 -2.2936 -1.1501 17 6 2.9361 -3.6618 -0.9706 18 8 2.1184 -4.2991 -0.0916 19 6 3.8802 -4.3838 -1.6887 20 6 4.7149 -3.7413 -2.5845 21 7 5.7188 -4.5186 -3.3454 22 8 5.8156 -5.8201 -3.1689 23 8 6.5144 -3.9087 -4.1994 24 6 4.6110 -2.3787 -2.7756 25 1 -1.0502 0.0001 0.0003 26 1 3.0098 -1.0241 0.0745 27 1 3.0090 0.5779 0.8504 28 1 6.2114 2.3508 -2.5018 29 1 2.0925 -1.7311 -0.5922 30 1 1.2919 -4.6153 -0.4815 31 1 3.9631 -5.4512 -1.5468 32 1 5.2614 -1.8807 -3.4796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490986524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:14 Heat of formation + Delta-G solvation = 63.319749 kcal Electronic energy + Delta-G solvation = -22560.088144 eV Core-core repulsion = 18879.897312 eV Total energy + Delta-G solvation = -3680.190832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06589 -40.45481 -39.70445 -37.69427 -36.94152 -35.71376 -34.83133 -33.32080 -33.01042 -31.40080 -28.78826 -27.66810 -26.99680 -24.41169 -23.61493 -22.02097 -20.28817 -19.61374 -19.42155 -18.43913 -18.38549 -18.10435 -17.57974 -17.26990 -17.20553 -16.42081 -16.07334 -15.90375 -15.61939 -14.91233 -14.67084 -14.21896 -13.76350 -13.66180 -13.46857 -12.99394 -12.82731 -12.69081 -12.65696 -12.52373 -12.18380 -12.01952 -11.98447 -11.50368 -11.26755 -10.99642 -10.63666 -10.27297 -10.24062 -9.53093 -8.42994 -6.02189 -1.98927 -0.53314 -0.21062 -0.15715 1.35172 1.41006 1.50011 1.67420 1.78569 1.87400 2.23085 2.49516 2.71776 2.90986 3.02403 3.34776 3.47754 3.51998 3.60672 3.68301 3.85502 4.15287 4.31929 4.40601 4.46086 4.65273 4.70977 4.79433 5.07537 5.12140 5.25271 5.45559 5.99057 6.62983 6.65089 6.71290 7.07705 7.40418 8.17255 8.61462 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.006033 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.162942 B = 4639.674631 C = 6224.574423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.240 4.240 3 C 0.164 3.836 4 N -0.419 5.419 5 C -0.398 4.398 6 H 0.085 0.915 7 C 0.021 3.979 8 N -0.828 5.828 9 Si 0.985 3.015 10 H -0.258 1.258 11 H -0.289 1.289 12 H -0.261 1.261 13 C 0.478 3.522 14 O -0.579 6.579 15 C -0.091 4.091 16 C -0.093 4.093 17 C 0.139 3.861 18 O -0.475 6.475 19 C -0.062 4.062 20 C 0.001 3.999 21 N -0.013 5.013 22 O -0.128 6.128 23 O -0.238 6.238 24 C -0.028 4.028 25 H 0.257 0.743 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.276 0.724 29 H 0.189 0.811 30 H 0.425 0.575 31 H 0.193 0.807 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 -10.673 7.455 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.241 4.241 3 C 0.043 3.957 4 N -0.135 5.135 5 C -0.527 4.527 6 H 0.103 0.897 7 C -0.194 4.194 8 N -0.458 5.458 9 Si 0.808 3.192 10 H -0.183 1.183 11 H -0.215 1.215 12 H -0.185 1.185 13 C 0.269 3.731 14 O -0.462 6.462 15 C -0.096 4.096 16 C -0.112 4.112 17 C 0.092 3.908 18 O -0.290 6.290 19 C -0.082 4.082 20 C -0.085 4.085 21 N 0.465 4.535 22 O -0.337 6.337 23 O -0.415 6.415 24 C -0.049 4.049 25 H 0.273 0.727 26 H 0.142 0.858 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.206 0.794 30 H 0.287 0.713 31 H 0.210 0.790 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.250 -9.815 7.451 15.408 hybrid contribution 0.492 0.802 -1.118 1.461 sum -8.758 -9.013 6.333 14.073 Atomic orbital electron populations 1.25770 0.96487 0.98259 0.97748 1.23654 0.95171 1.02553 1.02727 1.19712 0.85127 1.01305 0.89574 1.42130 1.55894 1.05385 1.10119 1.20065 1.01135 0.82068 1.49384 0.89709 1.27859 0.93677 1.03538 0.94312 1.68906 1.02252 1.39591 1.35056 0.85077 0.78969 0.77206 0.77934 1.18266 1.21468 1.18494 1.18209 0.85450 0.84849 0.84552 1.90558 1.53530 1.75128 1.26961 1.20063 0.96886 0.95112 0.97566 1.23226 0.98792 0.95398 0.93742 1.17631 0.93543 0.88638 0.90948 1.84848 1.34627 1.75392 1.34101 1.21633 0.92198 1.03728 0.90661 1.19975 0.96156 0.90508 1.01866 1.50585 1.00611 1.02804 0.99499 1.96182 1.76018 0.90921 1.70610 1.96351 1.41289 1.71809 1.32035 1.20936 0.96082 0.90949 0.96898 0.72724 0.85775 0.88777 0.91317 0.79443 0.71300 0.79038 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 19.25 74.32 1.43 -2.58 16 2 C -0.24 -7.45 11.76 31.12 0.37 -7.09 16 3 C 0.16 5.86 5.38 84.57 0.46 6.32 16 4 N -0.42 -20.08 2.47 -643.96 -1.59 -21.67 16 5 C -0.40 -21.08 9.24 86.70 0.80 -20.28 16 6 H 0.09 4.37 7.95 -2.91 -0.02 4.35 16 7 C 0.02 1.16 4.85 87.30 0.42 1.58 16 8 N -0.83 -47.58 11.35 23.26 0.26 -47.32 16 9 Si 0.99 42.62 29.66 68.60 2.03 44.65 16 10 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 13 C 0.48 24.08 6.56 86.75 0.57 24.65 16 14 O -0.58 -34.87 14.45 -3.63 -0.05 -34.92 16 15 C -0.09 -3.55 5.61 -20.10 -0.11 -3.66 16 16 C -0.09 -2.60 7.46 22.65 0.17 -2.43 16 17 C 0.14 2.91 6.70 22.47 0.15 3.06 16 18 O -0.48 -6.50 13.50 -92.54 -1.25 -7.75 16 19 C -0.06 -1.41 9.51 22.43 0.21 -1.20 16 20 C 0.00 0.04 6.88 36.32 0.25 0.29 16 21 N -0.01 -0.45 4.98 -46.59 -0.23 -0.68 16 22 O -0.13 -4.03 19.14 3.52 0.07 -3.96 16 23 O -0.24 -9.80 19.14 3.52 0.07 -9.73 16 24 C -0.03 -1.08 9.12 22.55 0.21 -0.87 16 25 H 0.26 3.60 7.80 -4.41 -0.03 3.56 16 26 H 0.13 3.85 3.79 -5.40 -0.02 3.82 16 27 H 0.09 3.30 8.11 -2.39 -0.02 3.28 16 28 H 0.28 14.99 8.27 -92.71 -0.77 14.22 16 29 H 0.19 4.99 3.22 -2.91 -0.01 4.98 16 30 H 0.43 1.21 9.06 -74.06 -0.67 0.54 16 31 H 0.19 3.16 7.56 -2.91 -0.02 3.14 16 32 H 0.13 5.95 7.41 -2.91 -0.02 5.93 16 Total: -1.00 -76.38 301.51 4.76 -71.62 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.53 Total: 11.97 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 4.92 Total: -2.21 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.56 Total: -69.67 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -1.17 Total: -56.36 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -76.38 4.76 -71.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.939 kcal (2) G-P(sol) polarization free energy of solvation -76.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds