Wall clock time and date at job start Tue Mar 31 2020 03:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86792 * 120.00213 * 2 1 4 4 H 1.48496 * 109.47434 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47115 * 299.99813 * 3 2 1 6 6 H 1.48501 * 109.47266 * 59.99481 * 3 2 1 7 7 C 1.38957 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99300 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99856 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99988 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00304 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.46925 * 180.02562 * 12 10 9 14 14 C 1.34783 * 119.99675 * 180.02562 * 13 12 10 15 15 O 1.21719 * 119.99598 * 359.97438 * 14 13 12 16 16 C 1.46261 * 120.00055 * 180.27688 * 14 13 12 17 17 C 1.34974 * 119.99768 * 172.93914 * 16 14 13 18 18 C 1.47000 * 120.00189 * 349.03616 * 17 16 14 19 19 C 1.39970 * 120.10938 * 316.07290 * 18 17 16 20 20 C 1.37664 * 119.88273 * 179.71958 * 19 18 17 21 21 C 1.39026 * 120.11416 * 0.56478 * 20 19 18 22 22 O 1.35729 * 119.88997 * 179.74182 * 21 20 19 23 23 C 1.39020 * 120.22525 * 359.71391 * 21 20 19 24 24 C 1.37667 * 120.11455 * 0.02562 * 23 21 20 25 25 H 0.96993 * 120.00358 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00412 * 359.97438 * 9 7 2 27 27 H 1.08999 * 109.46858 * 60.00291 * 12 10 9 28 28 H 1.09002 * 109.46903 * 300.00266 * 12 10 9 29 29 H 0.96996 * 120.00722 * 359.97438 * 13 12 10 30 30 H 1.07995 * 119.99692 * 352.93813 * 16 14 13 31 31 H 1.08005 * 119.99422 * 169.03254 * 17 16 14 32 32 H 1.07996 * 120.06129 * 0.02562 * 19 18 17 33 33 H 1.07996 * 119.94974 * 180.27976 * 20 19 18 34 34 H 0.96702 * 113.99719 * 269.97377 * 22 21 20 35 35 H 1.08004 * 119.94810 * 179.97438 * 23 21 20 36 36 H 1.07999 * 120.05650 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0011 13 7 2.1957 -5.9765 0.0016 14 6 1.7464 -7.2472 0.0017 15 8 0.5497 -7.4695 0.0018 16 6 2.6968 -8.3589 0.0083 17 6 2.2529 -9.6254 0.1520 18 6 0.8575 -9.8755 0.5410 19 6 0.2675 -9.1221 1.5625 20 6 -1.0414 -9.3563 1.9190 21 6 -1.7733 -10.3470 1.2745 22 8 -3.0619 -10.5776 1.6333 23 6 -1.1901 -11.1021 0.2633 24 6 0.1164 -10.8722 -0.1044 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3907 0.0005 27 1 0.6167 -4.9209 -0.8886 28 1 0.6173 -4.9205 0.8914 29 1 3.1493 -5.7993 0.0012 30 1 3.7538 -8.1663 -0.1019 31 1 2.9230 -10.4551 -0.0188 32 1 0.8365 -8.3550 2.0666 33 1 -1.4991 -8.7725 2.7039 34 1 -3.1630 -11.2350 2.3352 35 1 -1.7627 -11.8709 -0.2341 36 1 0.5684 -11.4590 -0.8904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492841429.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:02 Heat of formation + Delta-G solvation = -64.073936 kcal Electronic energy + Delta-G solvation = -21606.082067 eV Core-core repulsion = 18056.200125 eV Total energy + Delta-G solvation = -3549.881942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16058 -39.23908 -38.18767 -36.82774 -34.46723 -33.68510 -33.36623 -31.39674 -31.02381 -29.19577 -27.53999 -24.78948 -23.47614 -22.66954 -21.50638 -19.78805 -19.24048 -18.51307 -18.07965 -17.45604 -15.98546 -15.87978 -15.54964 -15.34935 -15.16916 -14.94282 -14.44871 -14.13390 -13.87717 -13.79248 -13.49995 -13.28821 -12.94933 -12.47073 -12.20634 -12.03414 -11.92360 -11.64780 -11.53656 -11.15344 -10.52491 -10.41940 -10.33732 -9.97030 -9.70860 -9.66076 -9.01333 -8.65106 -8.61081 -8.11523 -8.01944 -6.52707 -3.94801 0.61549 1.44159 1.73966 3.09268 3.21434 3.27584 3.42145 3.46814 3.69954 3.73170 4.10796 4.13763 4.63984 4.80320 4.86962 4.93068 5.00079 5.15859 5.28033 5.30743 5.55190 5.76778 5.86627 5.90107 5.95176 5.99643 6.05592 6.11635 6.35349 6.42842 6.57108 6.67757 6.78707 7.45014 7.57271 7.83004 7.90924 8.42631 8.47840 9.03368 9.37976 9.85687 10.64247 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026807 B = 0.002906 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.237452 B = 9632.770449 C =10477.815749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.700 5.700 14 C 0.532 3.468 15 O -0.537 6.537 16 C -0.201 4.201 17 C -0.032 4.032 18 C -0.077 4.077 19 C -0.018 4.018 20 C -0.155 4.155 21 C 0.112 3.888 22 O -0.501 6.501 23 C -0.161 4.161 24 C -0.086 4.086 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.411 0.589 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.386 0.614 35 H 0.124 0.876 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 -21.355 2.823 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.353 5.353 14 C 0.320 3.680 15 O -0.416 6.416 16 C -0.222 4.222 17 C -0.051 4.051 18 C -0.077 4.077 19 C -0.036 4.036 20 C -0.174 4.174 21 C 0.067 3.933 22 O -0.311 6.311 23 C -0.179 4.179 24 C -0.104 4.104 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.249 0.751 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.242 0.758 35 H 0.142 0.858 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.327 -20.847 2.390 20.986 hybrid contribution 0.277 0.811 0.215 0.884 sum -0.050 -20.036 2.605 20.204 Atomic orbital electron populations 1.69619 1.06026 1.28456 1.49319 1.25335 0.95667 0.99961 0.96781 0.85755 0.79675 0.80801 0.77845 1.19126 1.20593 1.20598 1.19781 0.93482 0.81991 1.48192 0.87622 1.41808 1.09497 1.04507 1.62557 1.19759 0.88292 0.85023 0.85608 1.90495 1.13716 1.86844 1.57419 1.20941 0.91894 0.85798 1.03224 1.45723 1.11555 1.04732 1.73317 1.18420 0.88921 0.83155 0.77485 1.90894 1.16232 1.84320 1.50192 1.23054 0.99869 0.92899 1.06377 1.22309 0.93898 0.96260 0.92672 1.18890 0.93997 0.97181 0.97663 1.20957 0.94154 0.94148 0.94372 1.21216 0.94419 0.99772 1.01991 1.18605 0.83289 0.95775 0.95600 1.84799 1.22723 1.64290 1.59253 1.21161 0.95416 1.01493 0.99870 1.21007 0.93770 0.96812 0.98794 0.91614 0.77033 0.89842 0.89866 0.75131 0.84706 0.84628 0.86341 0.85701 0.75817 0.85795 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.31 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 10 C 0.43 9.80 7.85 -10.98 -0.09 9.71 16 11 O -0.60 -15.25 15.24 5.54 0.08 -15.17 16 12 C 0.11 2.01 6.15 -5.19 -0.03 1.98 16 13 N -0.70 -11.45 5.52 -62.93 -0.35 -11.80 16 14 C 0.53 8.12 6.79 -13.03 -0.09 8.03 16 15 O -0.54 -9.57 12.16 5.17 0.06 -9.51 16 16 C -0.20 -2.27 9.91 -37.52 -0.37 -2.64 16 17 C -0.03 -0.32 9.80 -37.19 -0.36 -0.68 16 18 C -0.08 -0.94 4.53 -105.05 -0.48 -1.41 16 19 C -0.02 -0.24 6.59 -39.14 -0.26 -0.50 16 20 C -0.16 -2.02 9.97 -39.50 -0.39 -2.41 16 21 C 0.11 1.37 6.71 -39.00 -0.26 1.11 16 22 O -0.50 -5.44 13.49 -18.89 -0.25 -5.69 16 23 C -0.16 -1.81 9.97 -39.50 -0.39 -2.21 16 24 C -0.09 -0.94 9.79 -39.14 -0.38 -1.32 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.40 9.51 7.90 -40.82 -0.32 9.18 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.41 6.56 7.42 -40.82 -0.30 6.26 16 30 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.12 1.60 7.03 -52.49 -0.37 1.23 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.39 2.07 9.06 45.56 0.41 2.48 16 35 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -33.33 322.30 -6.36 -39.69 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -3.05 Total: 17.27 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.35 Total: 1.79 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.32 Total: -48.75 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.11 Total: -30.37 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.33 -6.36 -39.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492841429.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.386 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds