Wall clock time and date at job start Tue Mar 31 2020 02:58:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36433 * 124.81780 * 2 1
4 4 C 1.34437 * 109.14118 * 179.72462 * 3 2 1
5 5 C 1.46791 * 106.41445 * 0.44201 * 4 3 2
6 6 C 1.46766 * 127.03554 * 179.83060 * 5 4 3
7 7 C 1.35192 * 119.99888 * 320.54226 * 6 5 4
8 8 C 1.41708 * 119.99844 * 346.59179 * 7 6 5
9 9 O 1.21753 * 120.00280 * 352.66667 * 8 7 6
10 10 N 1.34777 * 119.99757 * 172.67042 * 8 7 6
11 11 C 1.46964 * 120.59584 * 354.62176 * 10 8 7
12 12 C 1.53806 * 108.39908 * 124.75783 * 11 10 8
13 13 N 1.46966 * 108.58301 * 49.63663 * 12 11 10
14 14 C 1.36935 * 120.59855 * 124.66789 * 13 12 11
15 15 H 1.08004 * 119.99952 * 214.14782 * 14 13 12
16 16 C 1.38819 * 119.99926 * 34.14026 * 14 13 12
17 17 N 1.31614 * 119.99642 * 6.92165 * 16 14 13
18 18 Si 1.86792 * 120.00105 * 186.92012 * 16 14 13
19 19 H 1.48506 * 109.47342 * 59.99872 * 18 16 14
20 20 H 1.48498 * 109.47206 * 180.02562 * 18 16 14
21 21 H 1.48510 * 109.47046 * 300.00151 * 18 16 14
22 22 C 1.46965 * 118.81257 * 304.64870 * 13 12 11
23 23 C 1.46966 * 120.59394 * 174.89670 * 10 8 7
24 24 C 1.34826 * 124.81804 * 180.02562 * 2 1 3
25 25 H 1.08999 * 109.47385 * 269.98034 * 1 2 3
26 26 H 1.08999 * 109.46783 * 29.98143 * 1 2 3
27 27 H 1.08995 * 109.46811 * 149.97638 * 1 2 3
28 28 H 1.08001 * 125.42942 * 359.97438 * 3 2 1
29 29 H 1.08004 * 126.79133 * 180.26361 * 4 3 2
30 30 H 1.07999 * 120.00667 * 140.54315 * 6 5 4
31 31 H 1.08005 * 120.00280 * 166.31487 * 7 6 5
32 32 H 1.08998 * 109.60840 * 244.53930 * 11 10 8
33 33 H 1.08995 * 109.60817 * 5.04716 * 11 10 8
34 34 H 1.08999 * 109.74355 * 289.84586 * 12 11 10
35 35 H 1.09004 * 109.53708 * 169.30426 * 12 11 10
36 36 H 0.97001 * 119.99677 * 180.02562 * 17 16 14
37 37 H 1.09002 * 109.61051 * 295.48296 * 22 13 12
38 38 H 1.08996 * 109.75599 * 175.05318 * 22 13 12
39 39 H 1.09004 * 109.60772 * 354.95536 * 23 10 8
40 40 H 1.08999 * 109.60864 * 115.45697 * 23 10 8
41 41 H 1.08004 * 125.92838 * 0.02562 * 24 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2440 1.1201 0.0000
4 6 3.5383 0.7568 0.0061
5 6 3.5573 -0.7109 -0.0007
6 6 4.7402 -1.5797 -0.0011
7 6 5.8223 -1.2479 -0.7403
8 6 5.7238 -0.2335 -1.7249
9 8 4.6386 0.2457 -1.9988
10 7 6.8314 0.2008 -2.3581
11 6 8.1603 -0.2823 -1.9572
12 6 8.8561 -0.8728 -3.1952
13 7 8.7572 0.0969 -4.2952
14 6 9.8825 0.5382 -4.9386
15 1 9.9316 1.5525 -5.3064
16 6 10.9602 -0.3181 -5.1181
17 7 10.8520 -1.5891 -4.7938
18 14 12.5640 0.3334 -5.8200
19 1 13.0962 1.3987 -4.9326
20 1 13.5499 -0.7733 -5.9118
21 1 12.3208 0.8927 -7.1740
22 6 7.4288 0.5843 -4.6925
23 6 6.7326 1.1705 -3.4580
24 6 2.2348 -1.1069 -0.0005
25 1 -0.3634 -0.0004 1.0276
26 1 -0.3633 0.8902 -0.5135
27 1 -0.3633 -0.8897 -0.5142
28 1 1.8790 2.1365 -0.0004
29 1 4.3948 1.4148 0.0117
30 1 4.7462 -2.4842 0.5891
31 1 6.7631 -1.7527 -0.5773
32 1 8.7481 0.5475 -1.5648
33 1 8.0543 -1.0522 -1.1930
34 1 8.3676 -1.8037 -3.4832
35 1 9.9052 -1.0624 -2.9680
36 1 11.6052 -2.1874 -4.9189
37 1 6.8386 -0.2429 -5.0870
38 1 7.5325 1.3561 -5.4551
39 1 5.6835 1.3602 -3.6853
40 1 7.2210 2.1014 -3.1701
41 1 1.8787 -2.1265 -0.0013
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000492959821.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:24
Heat of formation + Delta-G solvation = 86.308080 kcal
Electronic energy + Delta-G solvation = -22905.445880 eV
Core-core repulsion = 19595.636748 eV
Total energy + Delta-G solvation = -3309.809132 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.78797 -39.40833 -36.72031 -33.92338 -33.57039 -31.82515 -31.02855 -29.99754
-28.62868 -27.04965 -26.01562 -23.98855 -23.07155 -22.13403 -20.51893 -19.89683
-19.27311 -17.97233 -17.42526 -16.40847 -16.05351 -15.21566 -14.97625 -14.70362
-14.52333 -14.05453 -13.66880 -13.43912 -13.34036 -13.13547 -12.92975 -12.86092
-12.66331 -12.37019 -12.00694 -11.85091 -11.58159 -11.38971 -11.12167 -10.81056
-10.62407 -10.42745 -10.12861 -10.02870 -9.78091 -9.55484 -9.05388 -8.51816
-8.16247 -7.81361 -7.44451 -6.53862 -5.79854 -3.32670 1.33372 2.53697
3.07335 3.37236 3.42044 3.42425 3.43319 3.81909 4.02654 4.47563
4.64844 4.97326 5.02507 5.10496 5.19860 5.28454 5.32109 5.38941
5.48940 5.74739 5.81131 5.95824 6.04405 6.06874 6.22530 6.29858
6.30152 6.37345 6.49760 6.58623 6.65335 6.71137 6.92165 7.10653
7.18336 7.38433 7.40676 7.52019 7.60647 7.76186 8.21281 8.46666
8.93774 9.19875 9.79388 10.40195 11.26813
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.044684 B = 0.003277 C = 0.003160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 626.476640 B = 8542.595784 C = 8859.878490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.455 5.455
3 C -0.040 4.040
4 C -0.108 4.108
5 C -0.153 4.153
6 C 0.014 3.986
7 C -0.230 4.230
8 C 0.538 3.462
9 O -0.543 6.543
10 N -0.598 5.598
11 C 0.079 3.921
12 C 0.159 3.841
13 N -0.592 5.592
14 C -0.255 4.255
15 H 0.064 0.936
16 C 0.007 3.993
17 N -0.905 5.905
18 Si 0.907 3.093
19 H -0.283 1.283
20 H -0.290 1.290
21 H -0.282 1.282
22 C 0.132 3.868
23 C 0.099 3.901
24 C 0.011 3.989
25 H 0.067 0.933
26 H 0.079 0.921
27 H 0.078 0.922
28 H 0.154 0.846
29 H 0.130 0.870
30 H 0.124 0.876
31 H 0.129 0.871
32 H 0.060 0.940
33 H 0.073 0.927
34 H 0.023 0.977
35 H 0.099 0.901
36 H 0.256 0.744
37 H 0.021 0.979
38 H 0.063 0.937
39 H 0.079 0.921
40 H 0.057 0.943
41 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.339 0.928 12.022 20.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.132 5.132
3 C -0.165 4.165
4 C -0.132 4.132
5 C -0.161 4.161
6 C -0.006 4.006
7 C -0.251 4.251
8 C 0.330 3.670
9 O -0.424 6.424
10 N -0.330 5.330
11 C -0.046 4.046
12 C 0.032 3.968
13 N -0.315 5.315
14 C -0.385 4.385
15 H 0.081 0.919
16 C -0.192 4.192
17 N -0.549 5.549
18 Si 0.736 3.264
19 H -0.209 1.209
20 H -0.216 1.216
21 H -0.208 1.208
22 C 0.005 3.995
23 C -0.026 4.026
24 C -0.121 4.121
25 H 0.085 0.915
26 H 0.098 0.902
27 H 0.097 0.903
28 H 0.171 0.829
29 H 0.148 0.852
30 H 0.142 0.858
31 H 0.147 0.853
32 H 0.078 0.922
33 H 0.091 0.909
34 H 0.041 0.959
35 H 0.117 0.883
36 H 0.066 0.934
37 H 0.039 0.961
38 H 0.082 0.918
39 H 0.098 0.902
40 H 0.075 0.925
41 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -17.113 1.096 11.816 20.825
hybrid contribution 1.064 0.155 -0.539 1.203
sum -16.049 1.251 11.277 19.654
Atomic orbital electron populations
1.21941 0.78121 1.04012 1.02586 1.43269 1.05821 1.05939 1.58189
1.21438 0.90785 0.90606 1.13696 1.21678 0.94968 0.93261 1.03335
1.19586 0.91140 0.93197 1.12149 1.21640 0.90743 0.94827 0.93431
1.22155 0.99800 1.03060 1.00068 1.17175 0.83971 0.82860 0.83000
1.90838 1.26462 1.58630 1.66481 1.48051 1.06681 1.43828 1.34454
1.22789 0.83030 0.98825 0.99930 1.21275 1.00720 0.90279 0.84479
1.43903 1.00625 1.50796 1.36153 1.19141 0.92679 0.94556 1.32132
0.91867 1.25267 0.99759 0.94879 0.99316 1.69919 1.30839 1.02844
1.51336 0.86312 0.83048 0.77715 0.79278 1.20902 1.21571 1.20832
1.21308 0.87653 0.97010 0.93521 1.22088 1.01014 0.91190 0.88284
1.21955 0.90161 0.91019 1.08941 0.91470 0.90232 0.90299 0.82890
0.85241 0.85844 0.85291 0.92212 0.90855 0.95929 0.88333 0.93431
0.96076 0.91846 0.90244 0.92497 0.82296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.53 11.03 59.85 0.66 1.19 16
2 N -0.45 -5.30 3.09 -124.12 -0.38 -5.68 16
3 C -0.04 -0.53 11.31 -16.85 -0.19 -0.72 16
4 C -0.11 -1.68 8.01 -37.47 -0.30 -1.98 16
5 C -0.15 -2.27 4.82 -103.07 -0.50 -2.77 16
6 C 0.01 0.20 10.17 -37.22 -0.38 -0.18 16
7 C -0.23 -3.58 9.16 -39.34 -0.36 -3.94 16
8 C 0.54 10.12 6.95 -14.93 -0.10 10.02 16
9 O -0.54 -11.20 11.45 5.14 0.06 -11.15 16
10 N -0.60 -11.64 2.94 -175.60 -0.52 -12.15 16
11 C 0.08 1.50 6.52 -3.37 -0.02 1.48 16
12 C 0.16 3.74 5.45 -3.37 -0.02 3.73 16
13 N -0.59 -14.98 2.95 -171.77 -0.51 -15.48 16
14 C -0.26 -6.96 9.56 -15.06 -0.14 -7.11 16
15 H 0.06 1.69 7.84 -52.48 -0.41 1.28 16
16 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16
17 N -0.91 -25.84 11.01 55.49 0.61 -25.23 16
18 Si 0.91 21.44 29.56 -169.99 -5.02 16.41 16
19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
22 C 0.13 2.92 6.67 -3.60 -0.02 2.90 16
23 C 0.10 1.95 6.58 -3.60 -0.02 1.92 16
24 C 0.01 0.13 11.39 -16.31 -0.19 -0.05 16
25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
26 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16
27 H 0.08 0.45 8.13 -51.93 -0.42 0.02 16
28 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16
29 H 0.13 2.13 7.64 -52.48 -0.40 1.73 16
30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16
31 H 0.13 1.79 5.82 -52.48 -0.31 1.48 16
32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
33 H 0.07 1.19 5.31 -51.93 -0.28 0.91 16
34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
35 H 0.10 2.54 6.11 -51.93 -0.32 2.22 16
36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.06 1.34 7.94 -51.93 -0.41 0.92 16
39 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16
40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
41 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16
LS Contribution 332.21 15.07 5.01 5.01
Total: -1.00 -33.13 332.21 -8.28 -41.41
By element:
Atomic # 1 Polarization: 8.14 SS G_CDS: -5.85 Total: 2.29 kcal
Atomic # 6 Polarization: 6.25 SS G_CDS: -1.68 Total: 4.57 kcal
Atomic # 7 Polarization: -57.75 SS G_CDS: -0.80 Total: -58.55 kcal
Atomic # 8 Polarization: -11.20 SS G_CDS: 0.06 Total: -11.15 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -33.13 -8.28 -41.41 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000492959821.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.719 kcal
(2) G-P(sol) polarization free energy of solvation -33.129 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds