Wall clock time and date at job start Tue Mar 31 2020 02:58:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36433 * 124.81780 * 2 1
4 4 C 1.34437 * 109.14118 * 179.72462 * 3 2 1
5 5 C 1.46791 * 106.41445 * 0.44201 * 4 3 2
6 6 C 1.46766 * 127.03554 * 179.83060 * 5 4 3
7 7 C 1.35192 * 119.99888 * 320.54226 * 6 5 4
8 8 C 1.41708 * 119.99844 * 346.59179 * 7 6 5
9 9 O 1.21753 * 120.00280 * 352.66667 * 8 7 6
10 10 N 1.34777 * 119.99757 * 172.67042 * 8 7 6
11 11 C 1.46964 * 120.59584 * 354.62176 * 10 8 7
12 12 C 1.53806 * 108.39908 * 124.75783 * 11 10 8
13 13 N 1.46966 * 108.58301 * 49.63663 * 12 11 10
14 14 C 1.36935 * 120.59855 * 124.66789 * 13 12 11
15 15 H 1.08004 * 119.99952 * 214.14782 * 14 13 12
16 16 C 1.38819 * 119.99926 * 34.14026 * 14 13 12
17 17 N 1.31614 * 119.99642 * 6.92165 * 16 14 13
18 18 Si 1.86792 * 120.00105 * 186.92012 * 16 14 13
19 19 H 1.48506 * 109.47342 * 59.99872 * 18 16 14
20 20 H 1.48498 * 109.47206 * 180.02562 * 18 16 14
21 21 H 1.48510 * 109.47046 * 300.00151 * 18 16 14
22 22 C 1.46965 * 118.81257 * 304.64870 * 13 12 11
23 23 C 1.46966 * 120.59394 * 174.89670 * 10 8 7
24 24 C 1.34826 * 124.81804 * 180.02562 * 2 1 3
25 25 H 1.08999 * 109.47385 * 269.98034 * 1 2 3
26 26 H 1.08999 * 109.46783 * 29.98143 * 1 2 3
27 27 H 1.08995 * 109.46811 * 149.97638 * 1 2 3
28 28 H 1.08001 * 125.42942 * 359.97438 * 3 2 1
29 29 H 1.08004 * 126.79133 * 180.26361 * 4 3 2
30 30 H 1.07999 * 120.00667 * 140.54315 * 6 5 4
31 31 H 1.08005 * 120.00280 * 166.31487 * 7 6 5
32 32 H 1.08998 * 109.60840 * 244.53930 * 11 10 8
33 33 H 1.08995 * 109.60817 * 5.04716 * 11 10 8
34 34 H 1.08999 * 109.74355 * 289.84586 * 12 11 10
35 35 H 1.09004 * 109.53708 * 169.30426 * 12 11 10
36 36 H 0.97001 * 119.99677 * 180.02562 * 17 16 14
37 37 H 1.09002 * 109.61051 * 295.48296 * 22 13 12
38 38 H 1.08996 * 109.75599 * 175.05318 * 22 13 12
39 39 H 1.09004 * 109.60772 * 354.95536 * 23 10 8
40 40 H 1.08999 * 109.60864 * 115.45697 * 23 10 8
41 41 H 1.08004 * 125.92838 * 0.02562 * 24 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2440 1.1201 0.0000
4 6 3.5383 0.7568 0.0061
5 6 3.5573 -0.7109 -0.0007
6 6 4.7402 -1.5797 -0.0011
7 6 5.8223 -1.2479 -0.7403
8 6 5.7238 -0.2335 -1.7249
9 8 4.6386 0.2457 -1.9988
10 7 6.8314 0.2008 -2.3581
11 6 8.1603 -0.2823 -1.9572
12 6 8.8561 -0.8728 -3.1952
13 7 8.7572 0.0969 -4.2952
14 6 9.8825 0.5382 -4.9386
15 1 9.9316 1.5525 -5.3064
16 6 10.9602 -0.3181 -5.1181
17 7 10.8520 -1.5891 -4.7938
18 14 12.5640 0.3334 -5.8200
19 1 13.0962 1.3987 -4.9326
20 1 13.5499 -0.7733 -5.9118
21 1 12.3208 0.8927 -7.1740
22 6 7.4288 0.5843 -4.6925
23 6 6.7326 1.1705 -3.4580
24 6 2.2348 -1.1069 -0.0005
25 1 -0.3634 -0.0004 1.0276
26 1 -0.3633 0.8902 -0.5135
27 1 -0.3633 -0.8897 -0.5142
28 1 1.8790 2.1365 -0.0004
29 1 4.3948 1.4148 0.0117
30 1 4.7462 -2.4842 0.5891
31 1 6.7631 -1.7527 -0.5773
32 1 8.7481 0.5475 -1.5648
33 1 8.0543 -1.0522 -1.1930
34 1 8.3676 -1.8037 -3.4832
35 1 9.9052 -1.0624 -2.9680
36 1 11.6052 -2.1874 -4.9189
37 1 6.8386 -0.2429 -5.0870
38 1 7.5325 1.3561 -5.4551
39 1 5.6835 1.3602 -3.6853
40 1 7.2210 2.1014 -3.1701
41 1 1.8787 -2.1265 -0.0013
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000492959821.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:23
Heat of formation + Delta-G solvation = 67.011765 kcal
Electronic energy + Delta-G solvation = -22906.282631 eV
Core-core repulsion = 19595.636748 eV
Total energy + Delta-G solvation = -3310.645883 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.78659 -40.83429 -38.40183 -35.54062 -34.84691 -33.32147 -32.40824 -31.70170
-29.69012 -28.70299 -27.02001 -25.61646 -24.69643 -23.65996 -21.97221 -20.86229
-20.69499 -19.45477 -18.71889 -17.88549 -17.55081 -16.77018 -16.21430 -16.07982
-15.90814 -15.46612 -15.24040 -15.06092 -14.87616 -14.56074 -14.25670 -14.07230
-13.57079 -13.43637 -13.26026 -13.11310 -13.01493 -12.72237 -12.64450 -12.58097
-12.43458 -12.21695 -11.98132 -11.85200 -11.64298 -10.73788 -10.59041 -10.39191
-9.64907 -8.98939 -8.55748 -8.46780 -7.86003 -5.44090 0.20006 1.49226
1.50757 1.55238 1.57749 2.26147 2.29273 2.32709 2.52001 2.71184
3.28914 3.63192 3.99711 4.05549 4.19179 4.24925 4.27628 4.30312
4.41063 4.49609 4.52044 4.62914 4.66298 4.75280 4.76173 4.77622
4.85627 4.91290 5.08934 5.18508 5.24252 5.30020 5.53512 5.59008
5.62224 5.68907 5.83879 6.12967 6.38707 6.40890 6.64385 6.74094
7.14015 7.49682 7.78728 8.35891 9.17456
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.044684 B = 0.003277 C = 0.003160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 626.476640 B = 8542.595784 C = 8859.878490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.068 3.932
2 N -0.453 5.453
3 C -0.042 4.042
4 C -0.143 4.143
5 C -0.197 4.197
6 C 0.045 3.955
7 C -0.268 4.268
8 C 0.536 3.464
9 O -0.566 6.566
10 N -0.608 5.608
11 C 0.096 3.904
12 C 0.167 3.833
13 N -0.610 5.610
14 C -0.270 4.270
15 H 0.065 0.935
16 C -0.043 4.043
17 N -0.934 5.934
18 Si 0.974 3.026
19 H -0.275 1.275
20 H -0.292 1.292
21 H -0.278 1.278
22 C 0.134 3.866
23 C 0.111 3.889
24 C 0.023 3.977
25 H 0.087 0.913
26 H 0.089 0.911
27 H 0.096 0.904
28 H 0.173 0.827
29 H 0.106 0.894
30 H 0.164 0.836
31 H 0.144 0.856
32 H 0.061 0.939
33 H 0.106 0.894
34 H -0.002 1.002
35 H 0.074 0.926
36 H 0.253 0.747
37 H 0.005 0.995
38 H 0.069 0.931
39 H 0.081 0.919
40 H 0.061 0.939
41 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.019 0.684 13.263 22.385
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.129 5.129
3 C -0.169 4.169
4 C -0.167 4.167
5 C -0.204 4.204
6 C 0.025 3.975
7 C -0.288 4.288
8 C 0.331 3.669
9 O -0.448 6.448
10 N -0.341 5.341
11 C -0.028 4.028
12 C 0.040 3.960
13 N -0.334 5.334
14 C -0.400 4.400
15 H 0.083 0.917
16 C -0.239 4.239
17 N -0.579 5.579
18 Si 0.801 3.199
19 H -0.200 1.200
20 H -0.218 1.218
21 H -0.204 1.204
22 C 0.008 3.992
23 C -0.014 4.014
24 C -0.110 4.110
25 H 0.106 0.894
26 H 0.108 0.892
27 H 0.114 0.886
28 H 0.190 0.810
29 H 0.124 0.876
30 H 0.181 0.819
31 H 0.161 0.839
32 H 0.079 0.921
33 H 0.123 0.877
34 H 0.016 0.984
35 H 0.092 0.908
36 H 0.062 0.938
37 H 0.023 0.977
38 H 0.088 0.912
39 H 0.100 0.900
40 H 0.079 0.921
41 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges -18.836 0.869 13.073 22.944
hybrid contribution 1.358 0.239 -0.886 1.639
sum -17.477 1.108 12.187 21.336
Atomic orbital electron populations
1.22279 0.75133 1.05462 1.04395 1.43635 1.07693 1.05179 1.56390
1.21735 0.90510 0.92045 1.12568 1.21668 0.95419 0.93968 1.05637
1.19913 0.92732 0.93096 1.14671 1.22114 0.89304 0.94877 0.91213
1.22105 1.01573 1.03750 1.01405 1.17692 0.83206 0.82861 0.83174
1.90820 1.27071 1.59542 1.67392 1.48123 1.07058 1.44151 1.34720
1.22551 0.82545 0.99481 0.98257 1.21087 0.99471 0.89467 0.85930
1.44172 1.01263 1.51020 1.36904 1.19457 0.93594 0.94814 1.32170
0.91726 1.26017 1.02902 0.95089 0.99882 1.70088 1.31513 1.03899
1.52376 0.85266 0.78973 0.77050 0.78617 1.20047 1.21784 1.20374
1.21344 0.86393 0.96569 0.94919 1.21849 1.00649 0.91328 0.87546
1.22491 0.89518 0.92600 1.06440 0.89431 0.89199 0.88574 0.80972
0.87600 0.81894 0.83885 0.92100 0.87659 0.98412 0.90758 0.93794
0.97683 0.91235 0.90037 0.92081 0.78977
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.69 11.03 127.77 1.41 2.10 16
2 N -0.45 -9.30 3.09 -546.60 -1.69 -10.99 16
3 C -0.04 -1.06 11.31 83.11 0.94 -0.12 16
4 C -0.14 -4.41 8.01 23.64 0.19 -4.23 16
5 C -0.20 -5.52 4.82 -18.86 -0.09 -5.61 16
6 C 0.05 1.15 10.17 23.80 0.24 1.39 16
7 C -0.27 -8.07 9.16 22.42 0.21 -7.86 16
8 C 0.54 20.19 6.95 85.10 0.59 20.78 16
9 O -0.57 -23.50 11.45 -4.52 -0.05 -23.56 16
10 N -0.61 -23.82 2.94 -827.66 -2.43 -26.26 16
11 C 0.10 3.66 6.52 86.56 0.56 4.22 16
12 C 0.17 8.07 5.45 86.56 0.47 8.54 16
13 N -0.61 -31.58 2.95 -697.34 -2.06 -33.64 16
14 C -0.27 -14.96 9.56 84.04 0.80 -14.15 16
15 H 0.07 3.48 7.84 -2.91 -0.02 3.46 16
16 C -0.04 -2.38 5.12 84.86 0.43 -1.95 16
17 N -0.93 -54.45 11.01 21.65 0.24 -54.21 16
18 Si 0.97 44.41 29.56 68.60 2.03 46.44 16
19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16
20 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16
21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16
22 C 0.13 6.07 6.67 86.42 0.58 6.65 16
23 C 0.11 4.44 6.58 86.41 0.57 5.01 16
24 C 0.02 0.50 11.39 84.19 0.96 1.46 16
25 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16
26 H 0.09 0.77 8.13 -2.39 -0.02 0.75 16
27 H 0.10 0.69 8.13 -2.39 -0.02 0.67 16
28 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16
29 H 0.11 3.65 7.64 -2.91 -0.02 3.63 16
30 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16
31 H 0.14 3.76 5.82 -2.91 -0.02 3.74 16
32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
33 H 0.11 3.33 5.31 -2.39 -0.01 3.31 16
34 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16
35 H 0.07 3.95 6.11 -2.39 -0.01 3.93 16
36 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16
37 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16
38 H 0.07 2.99 7.94 -2.39 -0.02 2.97 16
39 H 0.08 3.21 7.02 -2.39 -0.02 3.20 16
40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16
41 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16
Total: -1.00 -73.25 332.21 4.92 -68.33
By element:
Atomic # 1 Polarization: 16.62 SS G_CDS: 1.02 Total: 17.64 kcal
Atomic # 6 Polarization: 8.38 SS G_CDS: 7.86 Total: 16.24 kcal
Atomic # 7 Polarization: -119.15 SS G_CDS: -5.94 Total: -125.10 kcal
Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.56 kcal
Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal
Total: -73.25 4.92 -68.33 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000492959821.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.346 kcal
(2) G-P(sol) polarization free energy of solvation -73.251 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.095 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds