Wall clock time and date at job start Tue Mar 31 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48500 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46935 * 120.00004 * 3 2 1 6 6 H 1.48497 * 109.47404 * 240.00121 * 3 2 1 7 7 C 1.37870 * 120.00087 * 180.27470 * 2 1 3 8 8 H 1.08001 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00315 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47456 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00164 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.62297 * 328.10267 * 11 10 9 13 13 C 1.55138 * 110.70818 * 91.39397 * 11 10 9 14 14 C 1.54905 * 101.65044 * 154.03715 * 13 11 10 15 15 N 1.47848 * 104.79846 * 322.92833 * 14 13 11 16 16 C 1.38871 * 110.99938 * 146.36145 * 15 14 13 17 17 C 1.38956 * 120.17620 * 303.18264 * 16 15 14 18 18 C 1.37957 * 120.06053 * 180.02562 * 17 16 15 19 19 C 1.38611 * 120.42601 * 359.96963 * 18 17 16 20 20 C 1.37746 * 120.35079 * 0.03378 * 19 18 17 21 21 C 1.39731 * 119.92561 * 359.71262 * 20 19 18 22 22 C 1.47433 * 120.20944 * 180.30278 * 21 20 19 23 23 N 1.34782 * 120.00009 * 5.37750 * 22 21 20 24 24 O 1.21600 * 120.00373 * 185.38302 * 22 21 20 25 25 C 1.47447 * 108.56301 * 24.10161 * 15 14 13 26 26 H 0.97004 * 120.00286 * 359.72460 * 1 2 3 27 27 H 1.09001 * 109.46942 * 300.00057 * 9 7 2 28 28 H 1.08995 * 109.47478 * 59.99595 * 9 7 2 29 29 H 1.00892 * 111.00148 * 56.04138 * 10 9 7 30 30 H 1.08996 * 110.99265 * 272.12769 * 13 11 10 31 31 H 1.09005 * 110.99040 * 35.94938 * 13 11 10 32 32 H 1.09003 * 110.37559 * 204.10216 * 14 13 11 33 33 H 1.08996 * 110.46886 * 81.80836 * 14 13 11 34 34 H 1.07996 * 119.97028 * 359.97305 * 17 16 15 35 35 H 1.08002 * 119.78651 * 180.02562 * 18 17 16 36 36 H 1.07996 * 119.82454 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.03493 * 179.97438 * 20 19 18 38 38 H 0.96999 * 119.99656 * 0.02562 * 23 22 21 39 39 H 0.96994 * 120.00229 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.88773 * 239.60268 * 25 15 14 41 41 H 1.09000 * 109.88995 * 118.41575 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0061 9 6 1.2511 -2.4990 -0.0126 10 7 2.2058 -3.6156 -0.0172 11 6 1.5055 -4.9070 -0.0245 12 1 0.5605 -4.8344 0.5139 13 6 1.2767 -5.3987 -1.4780 14 6 1.1952 -6.9329 -1.2801 15 7 2.1867 -7.2307 -0.2246 16 6 1.7644 -8.2876 0.5710 17 6 0.5421 -8.2219 1.2287 18 6 0.1251 -9.2730 2.0189 19 6 0.9184 -10.4005 2.1631 20 6 2.1331 -10.4839 1.5191 21 6 2.5674 -9.4301 0.7109 22 6 3.8635 -9.5156 0.0134 23 7 4.5834 -10.6538 0.0660 24 8 4.2831 -8.5592 -0.6094 25 6 2.3948 -6.0133 0.5809 26 1 -0.4851 0.8400 0.0040 27 1 0.6241 -2.5613 0.8769 28 1 0.6248 -2.5524 -0.9030 29 1 2.8401 -3.5523 0.7649 30 1 0.3426 -5.0067 -1.8803 31 1 2.1180 -5.1317 -2.1176 32 1 1.4574 -7.4491 -2.2036 33 1 0.1961 -7.2227 -0.9548 34 1 -0.0817 -7.3467 1.1218 35 1 -0.8259 -9.2174 2.5277 36 1 0.5826 -11.2175 2.7845 37 1 2.7473 -11.3647 1.6354 38 1 4.2485 -11.4169 0.5626 39 1 5.4359 -10.7103 -0.3931 40 1 3.4418 -5.7134 0.5360 41 1 2.1040 -6.1986 1.6149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591736954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:04 Heat of formation + Delta-G solvation = 11.556109 kcal Electronic energy + Delta-G solvation = -22681.720929 eV Core-core repulsion = 19368.670308 eV Total energy + Delta-G solvation = -3313.050620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70322 -38.85100 -37.69324 -34.90168 -33.72768 -32.58677 -31.24034 -30.95211 -28.66133 -28.05373 -25.48144 -24.06507 -22.92274 -21.77127 -20.80140 -20.45828 -19.92448 -18.26705 -16.92533 -16.68620 -16.35354 -15.70518 -15.28667 -14.82303 -14.65095 -14.61093 -14.54750 -13.98722 -13.57761 -13.42110 -13.05840 -12.91006 -12.29989 -12.24116 -12.07811 -11.93275 -11.49194 -11.38811 -11.09582 -10.80646 -10.66580 -10.60142 -10.27802 -9.92071 -9.86858 -9.68427 -9.21059 -9.16696 -8.84693 -8.46211 -8.14317 -7.29275 -6.01491 -4.03254 0.68635 1.04383 2.86514 3.35909 3.39224 3.43105 3.43838 3.68550 3.90040 4.45167 4.55187 4.64454 4.76416 4.89527 5.11083 5.14603 5.15561 5.23168 5.34601 5.40118 5.49937 5.58540 5.61451 5.85401 5.94420 6.02686 6.10484 6.16893 6.23156 6.33776 6.43053 6.53734 6.70371 6.73527 7.02047 7.26240 7.29131 7.41945 7.51376 7.81568 8.15042 8.33584 8.41262 8.63028 9.06029 9.61672 11.09655 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.003285 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.942773 B = 8521.486119 C = 9038.916310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.676 5.676 11 C 0.068 3.932 12 H 0.042 0.958 13 C -0.113 4.113 14 C 0.047 3.953 15 N -0.477 5.477 16 C 0.156 3.844 17 C -0.160 4.160 18 C -0.085 4.085 19 C -0.137 4.137 20 C -0.086 4.086 21 C -0.125 4.125 22 C 0.555 3.445 23 N -0.863 5.863 24 O -0.490 6.490 25 C 0.053 3.947 26 H 0.262 0.738 27 H -0.015 1.015 28 H 0.028 0.972 29 H 0.330 0.670 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.394 0.606 39 H 0.402 0.598 40 H 0.091 0.909 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -25.704 4.078 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.307 5.307 11 C -0.044 4.044 12 H 0.060 0.940 13 C -0.152 4.152 14 C -0.079 4.079 15 N -0.197 5.197 16 C 0.060 3.940 17 C -0.180 4.180 18 C -0.104 4.104 19 C -0.155 4.155 20 C -0.105 4.105 21 C -0.129 4.129 22 C 0.339 3.661 23 N -0.430 5.430 24 O -0.363 6.363 25 C -0.073 4.073 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.046 0.954 29 H 0.148 0.852 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.223 0.777 39 H 0.232 0.768 40 H 0.109 0.891 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.369 -24.921 2.777 25.187 hybrid contribution -0.660 0.603 1.463 1.715 sum 1.710 -24.317 4.241 24.744 Atomic orbital electron populations 1.69954 1.06095 1.26879 1.50961 1.24985 0.94877 0.99372 0.95330 0.86532 0.79407 0.82592 0.78700 1.21381 1.20268 1.20096 1.21162 0.93558 0.90246 1.50313 0.91934 1.19590 0.90535 0.87352 0.95644 1.60711 1.20786 1.00464 1.48755 1.22699 0.95345 0.90917 0.95403 0.94033 1.22712 1.02782 0.91967 0.97705 1.23189 0.92452 0.97407 0.94823 1.60974 1.43627 1.03964 1.11173 1.19075 0.91030 0.91949 0.91966 1.21921 0.97330 1.00011 0.98766 1.21238 0.99418 0.92982 0.96713 1.21052 0.94813 0.98616 1.01007 1.21227 0.96321 0.97216 0.95706 1.19932 0.96080 0.95164 1.01718 1.18062 0.84363 0.82797 0.80855 1.43848 1.25265 1.16025 1.57812 1.90944 1.69636 1.35682 1.39991 1.23080 1.02017 0.87794 0.94448 0.92888 0.99746 0.95368 0.85214 0.91099 0.89457 0.90252 0.93647 0.85269 0.85613 0.85505 0.85572 0.77706 0.76775 0.89097 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.85 9.32 -34.45 -0.32 -15.17 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.20 5.21 5.30 -4.98 -0.03 5.18 16 10 N -0.68 -14.98 6.33 -106.07 -0.67 -15.65 16 11 C 0.07 1.26 3.28 -65.89 -0.22 1.05 16 12 H 0.04 0.79 7.82 -51.93 -0.41 0.39 16 13 C -0.11 -1.95 6.76 -24.60 -0.17 -2.11 16 14 C 0.05 0.71 6.52 -2.30 -0.01 0.69 16 15 N -0.48 -7.50 3.11 -167.70 -0.52 -8.02 16 16 C 0.16 2.13 4.60 -83.61 -0.38 1.74 16 17 C -0.16 -1.88 7.93 -39.42 -0.31 -2.19 16 18 C -0.08 -0.78 10.03 -39.55 -0.40 -1.17 16 19 C -0.14 -1.07 10.02 -39.62 -0.40 -1.47 16 20 C -0.09 -0.71 9.52 -39.20 -0.37 -1.09 16 21 C -0.12 -1.49 5.89 -104.80 -0.62 -2.11 16 22 C 0.55 7.08 8.02 -12.51 -0.10 6.98 16 23 N -0.86 -6.68 8.82 30.43 0.27 -6.41 16 24 O -0.49 -8.53 15.88 5.28 0.08 -8.44 16 25 C 0.05 0.87 6.10 -2.84 -0.02 0.86 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H -0.02 -0.43 8.08 -51.93 -0.42 -0.85 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.33 7.03 8.31 -39.30 -0.33 6.70 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.61 6.50 -51.93 -0.34 0.28 16 34 H 0.13 1.54 7.52 -52.49 -0.39 1.15 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.61 6.44 -52.49 -0.34 0.27 16 38 H 0.39 1.76 6.89 -40.82 -0.28 1.48 16 39 H 0.40 2.68 8.93 -40.82 -0.36 2.32 16 40 H 0.09 1.64 7.90 -51.93 -0.41 1.23 16 41 H 0.05 0.77 7.15 -51.93 -0.37 0.39 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -34.38 337.40 -9.21 -43.59 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.73 Total: 6.56 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.44 Total: -7.30 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.19 Total: -56.53 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.38 -9.21 -43.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.149 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds