Wall clock time and date at job start Tue Mar 31 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48500 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46935 * 120.00004 * 3 2 1 6 6 H 1.48497 * 109.47404 * 240.00121 * 3 2 1 7 7 C 1.37870 * 120.00087 * 180.27470 * 2 1 3 8 8 H 1.08001 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00315 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47456 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00164 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.62297 * 328.10267 * 11 10 9 13 13 C 1.55138 * 110.70818 * 91.39397 * 11 10 9 14 14 C 1.54905 * 101.65044 * 154.03715 * 13 11 10 15 15 N 1.47848 * 104.79846 * 322.92833 * 14 13 11 16 16 C 1.38871 * 110.99938 * 146.36145 * 15 14 13 17 17 C 1.38956 * 120.17620 * 303.18264 * 16 15 14 18 18 C 1.37957 * 120.06053 * 180.02562 * 17 16 15 19 19 C 1.38611 * 120.42601 * 359.96963 * 18 17 16 20 20 C 1.37746 * 120.35079 * 0.03378 * 19 18 17 21 21 C 1.39731 * 119.92561 * 359.71262 * 20 19 18 22 22 C 1.47433 * 120.20944 * 180.30278 * 21 20 19 23 23 N 1.34782 * 120.00009 * 5.37750 * 22 21 20 24 24 O 1.21600 * 120.00373 * 185.38302 * 22 21 20 25 25 C 1.47447 * 108.56301 * 24.10161 * 15 14 13 26 26 H 0.97004 * 120.00286 * 359.72460 * 1 2 3 27 27 H 1.09001 * 109.46942 * 300.00057 * 9 7 2 28 28 H 1.08995 * 109.47478 * 59.99595 * 9 7 2 29 29 H 1.00892 * 111.00148 * 56.04138 * 10 9 7 30 30 H 1.08996 * 110.99265 * 272.12769 * 13 11 10 31 31 H 1.09005 * 110.99040 * 35.94938 * 13 11 10 32 32 H 1.09003 * 110.37559 * 204.10216 * 14 13 11 33 33 H 1.08996 * 110.46886 * 81.80836 * 14 13 11 34 34 H 1.07996 * 119.97028 * 359.97305 * 17 16 15 35 35 H 1.08002 * 119.78651 * 180.02562 * 18 17 16 36 36 H 1.07996 * 119.82454 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.03493 * 179.97438 * 20 19 18 38 38 H 0.96999 * 119.99656 * 0.02562 * 23 22 21 39 39 H 0.96994 * 120.00229 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.88773 * 239.60268 * 25 15 14 41 41 H 1.09000 * 109.88995 * 118.41575 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0061 9 6 1.2511 -2.4990 -0.0126 10 7 2.2058 -3.6156 -0.0172 11 6 1.5055 -4.9070 -0.0245 12 1 0.5605 -4.8344 0.5139 13 6 1.2767 -5.3987 -1.4780 14 6 1.1952 -6.9329 -1.2801 15 7 2.1867 -7.2307 -0.2246 16 6 1.7644 -8.2876 0.5710 17 6 0.5421 -8.2219 1.2287 18 6 0.1251 -9.2730 2.0189 19 6 0.9184 -10.4005 2.1631 20 6 2.1331 -10.4839 1.5191 21 6 2.5674 -9.4301 0.7109 22 6 3.8635 -9.5156 0.0134 23 7 4.5834 -10.6538 0.0660 24 8 4.2831 -8.5592 -0.6094 25 6 2.3948 -6.0133 0.5809 26 1 -0.4851 0.8400 0.0040 27 1 0.6241 -2.5613 0.8769 28 1 0.6248 -2.5524 -0.9030 29 1 2.8401 -3.5523 0.7649 30 1 0.3426 -5.0067 -1.8803 31 1 2.1180 -5.1317 -2.1176 32 1 1.4574 -7.4491 -2.2036 33 1 0.1961 -7.2227 -0.9548 34 1 -0.0817 -7.3467 1.1218 35 1 -0.8259 -9.2174 2.5277 36 1 0.5826 -11.2175 2.7845 37 1 2.7473 -11.3647 1.6354 38 1 4.2485 -11.4169 0.5626 39 1 5.4359 -10.7103 -0.3931 40 1 3.4418 -5.7134 0.5360 41 1 2.1040 -6.1986 1.6149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591736954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:03 Heat of formation + Delta-G solvation = -14.823909 kcal Electronic energy + Delta-G solvation = -22682.864852 eV Core-core repulsion = 19368.670308 eV Total energy + Delta-G solvation = -3314.194544 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68343 -39.96442 -38.68985 -36.58074 -34.76255 -34.43331 -32.49288 -31.82143 -30.04701 -29.44348 -27.35759 -24.88499 -23.95086 -23.83142 -21.85595 -21.58000 -21.25573 -19.09834 -18.58185 -17.74802 -17.62898 -17.01337 -16.64322 -16.14975 -15.97848 -15.68849 -15.57545 -15.36818 -14.86932 -14.65220 -14.34963 -14.25954 -13.99717 -13.62721 -13.38688 -13.11791 -12.88393 -12.71710 -12.68578 -12.38753 -12.26716 -12.17876 -11.90123 -11.80391 -11.31410 -10.93391 -10.67665 -10.51791 -9.97149 -9.68494 -9.29827 -9.18554 -8.24500 -6.35893 -0.12032 0.27559 1.39874 1.43920 1.51886 2.02128 2.38708 2.67229 2.78972 2.86122 3.08673 3.45427 3.61639 3.83452 3.87526 3.95462 4.09049 4.13504 4.22731 4.30518 4.43891 4.49488 4.53874 4.68818 4.82687 4.83182 4.89479 4.96726 5.05218 5.22330 5.22816 5.26642 5.41845 5.46334 5.60818 5.77824 5.81370 6.00276 6.03202 6.38145 6.44237 6.63879 6.67356 6.84755 7.34979 7.52792 8.86987 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.003285 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.942773 B = 8521.486119 C = 9038.916310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.974 3.026 4 H -0.280 1.280 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.677 5.677 11 C 0.068 3.932 12 H 0.036 0.964 13 C -0.110 4.110 14 C 0.058 3.942 15 N -0.485 5.485 16 C 0.120 3.880 17 C -0.175 4.175 18 C -0.082 4.082 19 C -0.125 4.125 20 C -0.073 4.073 21 C -0.143 4.143 22 C 0.550 3.450 23 N -0.838 5.838 24 O -0.551 6.551 25 C 0.069 3.931 26 H 0.266 0.734 27 H -0.039 1.039 28 H 0.001 0.999 29 H 0.335 0.665 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.413 0.587 39 H 0.409 0.591 40 H 0.072 0.928 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -28.117 5.514 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.086 3.914 10 N -0.308 5.308 11 C -0.044 4.044 12 H 0.054 0.946 13 C -0.149 4.149 14 C -0.068 4.068 15 N -0.206 5.206 16 C 0.024 3.976 17 C -0.195 4.195 18 C -0.101 4.101 19 C -0.143 4.143 20 C -0.092 4.092 21 C -0.147 4.147 22 C 0.335 3.665 23 N -0.405 5.405 24 O -0.428 6.428 25 C -0.058 4.058 26 H 0.075 0.925 27 H -0.021 1.021 28 H 0.019 0.981 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.167 0.833 36 H 0.184 0.816 37 H 0.184 0.816 38 H 0.246 0.754 39 H 0.240 0.760 40 H 0.090 0.910 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.642 -27.424 4.236 27.874 hybrid contribution -0.779 1.163 1.075 1.765 sum 1.863 -26.261 5.311 26.857 Atomic orbital electron populations 1.70081 1.07770 1.28134 1.51347 1.25949 0.95821 1.03368 0.94437 0.85368 0.78117 0.77542 0.79164 1.20556 1.19038 1.19447 1.21514 0.93809 0.91490 1.50925 0.91880 1.19210 0.90445 0.88637 0.93141 1.60598 1.20213 1.00928 1.49071 1.22740 0.95228 0.89839 0.96573 0.94564 1.22630 1.01809 0.94070 0.96396 1.23083 0.93347 0.95143 0.95196 1.60872 1.44277 1.03856 1.11608 1.19233 0.92616 0.92121 0.93590 1.21874 0.96784 1.00857 0.99962 1.21583 1.00480 0.92464 0.95560 1.21536 0.93874 0.98805 1.00045 1.21659 0.96821 0.97071 0.93634 1.20062 0.95746 0.95939 1.02965 1.18353 0.84839 0.83074 0.80217 1.43609 1.24856 1.15198 1.56811 1.90916 1.71105 1.37970 1.42812 1.22809 1.00173 0.87858 0.94963 0.92531 1.02122 0.98081 0.84707 0.91308 0.91328 0.89989 0.92144 0.86445 0.83276 0.81568 0.81572 0.75446 0.75973 0.90986 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.44 0.28 -57.22 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -31.96 9.32 25.60 0.24 -31.72 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 11.94 5.30 85.55 0.45 12.40 16 10 N -0.68 -31.56 6.33 -489.49 -3.10 -34.65 16 11 C 0.07 2.64 3.28 46.09 0.15 2.79 16 12 H 0.04 1.47 7.82 -2.39 -0.02 1.45 16 13 C -0.11 -4.03 6.76 31.98 0.22 -3.81 16 14 C 0.06 1.80 6.52 86.77 0.57 2.37 16 15 N -0.49 -15.78 3.11 -684.47 -2.13 -17.91 16 16 C 0.12 3.24 4.60 38.71 0.18 3.42 16 17 C -0.17 -3.95 7.93 22.38 0.18 -3.77 16 18 C -0.08 -1.26 10.03 22.29 0.22 -1.03 16 19 C -0.13 -1.38 10.02 22.24 0.22 -1.16 16 20 C -0.07 -0.92 9.52 22.51 0.21 -0.71 16 21 C -0.14 -3.19 5.89 -19.98 -0.12 -3.31 16 22 C 0.55 13.58 8.02 86.66 0.70 14.28 16 23 N -0.84 -11.10 8.82 -175.88 -1.55 -12.66 16 24 O -0.55 -19.68 15.88 -4.03 -0.06 -19.74 16 25 C 0.07 2.39 6.10 86.64 0.53 2.92 16 26 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 27 H -0.04 -2.31 8.08 -2.39 -0.02 -2.33 16 28 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.34 14.94 8.31 -89.70 -0.75 14.19 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.06 1.67 6.50 -2.39 -0.02 1.65 16 34 H 0.12 2.84 7.52 -2.91 -0.02 2.82 16 35 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 37 H 0.17 0.66 6.44 -2.91 -0.02 0.64 16 38 H 0.41 2.15 6.89 -92.71 -0.64 1.51 16 39 H 0.41 4.73 8.93 -92.71 -0.83 3.90 16 40 H 0.07 2.76 7.90 -2.39 -0.02 2.74 16 41 H 0.06 1.86 7.15 -2.39 -0.02 1.84 16 Total: -1.00 -78.19 337.40 -1.46 -79.65 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -1.14 Total: 21.77 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.21 Total: -6.72 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -6.49 Total: -122.44 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.06 Total: -19.74 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -78.19 -1.46 -79.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.825 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds