Wall clock time and date at job start Tue Mar 31 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48494 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46678 * 299.99943 * 3 2 1 6 6 H 1.48491 * 109.47066 * 59.99878 * 3 2 1 7 7 C 1.37877 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00401 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47276 * 184.86532 * 9 7 2 11 11 C 1.46901 * 111.00081 * 64.07341 * 10 9 7 12 12 C 1.50690 * 109.47393 * 71.82547 * 11 10 9 13 13 C 1.38234 * 119.61738 * 95.36078 * 12 11 10 14 14 C 1.38631 * 119.16123 * 179.71174 * 13 12 11 15 15 C 1.38673 * 118.41967 * 0.54673 * 14 13 12 16 16 C 1.38188 * 119.16148 * 359.73665 * 15 14 13 17 17 N 1.31852 * 119.62261 * 275.63091 * 12 11 10 18 18 C 1.46894 * 111.00048 * 300.11456 * 10 9 7 19 19 C 1.53004 * 109.47399 * 286.28942 * 18 10 9 20 20 H 1.08994 * 110.87917 * 310.18107 * 19 18 10 21 21 C 1.54695 * 111.08296 * 74.04061 * 19 18 10 22 22 N 1.46756 * 105.53098 * 143.37673 * 21 19 18 23 23 C 1.34422 * 111.30478 * 343.08047 * 22 21 19 24 24 O 1.21282 * 124.94167 * 180.37098 * 23 22 21 25 25 C 1.51280 * 110.11235 * 0.40474 * 23 22 21 26 26 H 0.97004 * 120.00101 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46849 * 64.86421 * 9 7 2 28 28 H 1.09003 * 109.47095 * 304.86718 * 9 7 2 29 29 H 1.09002 * 109.47048 * 191.83460 * 11 10 9 30 30 H 1.09004 * 109.46592 * 311.82449 * 11 10 9 31 31 H 1.07995 * 120.41942 * 359.97438 * 13 12 11 32 32 H 1.07991 * 120.78863 * 180.30923 * 14 13 12 33 33 H 1.07995 * 120.42361 * 179.75209 * 15 14 13 34 34 H 1.08000 * 119.61349 * 179.97438 * 16 15 14 35 35 H 1.09007 * 109.47355 * 166.28943 * 18 10 9 36 36 H 1.09001 * 109.47273 * 46.28829 * 18 10 9 37 37 H 1.08996 * 110.13689 * 24.39612 * 21 19 18 38 38 H 1.08999 * 110.29050 * 262.43956 * 21 19 18 39 39 H 0.97005 * 124.34812 * 163.09107 * 22 21 19 40 40 H 1.08994 * 110.48435 * 134.93690 * 25 23 22 41 41 H 1.09011 * 110.48129 * 257.44253 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2013 -3.6133 0.1163 11 6 2.9069 -3.5705 1.4041 12 6 1.9583 -3.9557 2.5097 13 6 1.9218 -5.2643 2.9537 14 6 1.0498 -5.6069 3.9755 15 6 0.2352 -4.6186 4.5071 16 6 0.3230 -3.3329 4.0080 17 7 1.1687 -3.0418 3.0389 18 6 3.1508 -3.6150 -1.0045 19 6 2.4422 -4.0955 -2.2726 20 1 1.9011 -5.0233 -2.0874 21 6 1.4961 -3.0050 -2.8285 22 7 1.5902 -3.1106 -4.2892 23 6 2.6786 -3.8073 -4.6594 24 8 2.9989 -4.0377 -5.8063 25 6 3.4452 -4.2628 -3.4374 26 1 -0.4850 0.8401 -0.0004 27 1 0.6909 -2.5954 -0.9307 28 1 0.5608 -2.5204 0.8429 29 1 3.7436 -4.2689 1.3833 30 1 3.2801 -2.5617 1.5804 31 1 2.5676 -6.0094 2.5131 32 1 1.0033 -6.6202 4.3460 33 1 -0.4589 -4.8505 5.3013 34 1 -0.3083 -2.5576 4.4164 35 1 3.9808 -4.2839 -0.7766 36 1 3.5303 -2.6052 -1.1608 37 1 1.8253 -2.0194 -2.4995 38 1 0.4728 -3.1902 -2.5020 39 1 0.9494 -2.7268 -4.9081 40 1 3.7404 -5.3070 -3.5396 41 1 4.3211 -3.6333 -3.2801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595340299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:17 Heat of formation + Delta-G solvation = 11.571862 kcal Electronic energy + Delta-G solvation = -23282.428791 eV Core-core repulsion = 19969.378853 eV Total energy + Delta-G solvation = -3313.049937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.02526 -39.69551 -37.28892 -35.50760 -32.57401 -32.24672 -31.82149 -30.65638 -27.65841 -27.18018 -25.65416 -24.17869 -23.05228 -22.01403 -20.45981 -20.20980 -19.67702 -17.14010 -16.58906 -16.22007 -15.89757 -15.68979 -15.05967 -14.88399 -14.69200 -14.59234 -14.04807 -13.42037 -13.23661 -12.97255 -12.84266 -12.78326 -12.56223 -12.33238 -11.86568 -11.47958 -11.35292 -11.05958 -10.91048 -10.84414 -10.57840 -10.45727 -10.10982 -9.98383 -9.61812 -9.49495 -9.42765 -8.79603 -8.68375 -8.60443 -8.34387 -7.28070 -6.01203 -4.06997 1.51102 1.69451 2.90647 3.26591 3.35855 3.37411 3.78335 4.16398 4.41780 4.69148 4.77150 4.85447 5.03031 5.09820 5.19986 5.30541 5.37532 5.43749 5.51493 5.60807 5.80395 5.87432 5.95374 5.98099 6.03187 6.09525 6.16893 6.32504 6.39193 6.49569 6.53419 6.68990 6.76315 7.09239 7.12536 7.23763 7.35538 7.59215 7.90719 7.97786 8.21760 8.28158 8.57128 8.59880 9.00497 9.57905 11.04440 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.006115 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.956342 B = 4577.839069 C = 6345.720273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.170 3.830 10 N -0.537 5.537 11 C 0.103 3.897 12 C 0.157 3.843 13 C -0.165 4.165 14 C -0.085 4.085 15 C -0.190 4.190 16 C 0.099 3.901 17 N -0.448 5.448 18 C 0.066 3.934 19 C -0.085 4.085 20 H 0.089 0.911 21 C 0.099 3.901 22 N -0.730 5.730 23 C 0.518 3.482 24 O -0.558 6.558 25 C -0.151 4.151 26 H 0.259 0.741 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.405 0.595 40 H 0.096 0.904 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -9.873 4.607 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.577 4.577 8 H 0.072 0.928 9 C 0.045 3.955 10 N -0.261 5.261 11 C -0.025 4.025 12 C 0.018 3.982 13 C -0.186 4.186 14 C -0.111 4.111 15 C -0.210 4.210 16 C -0.058 4.058 17 N -0.157 5.157 18 C -0.063 4.063 19 C -0.104 4.104 20 H 0.107 0.893 21 C -0.024 4.024 22 N -0.384 5.384 23 C 0.304 3.696 24 O -0.437 6.437 25 C -0.192 4.192 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.242 0.758 40 H 0.114 0.886 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.552 -9.495 3.778 10.532 hybrid contribution 0.304 1.162 0.330 1.246 sum 2.856 -8.333 4.107 9.719 Atomic orbital electron populations 1.69937 1.05852 1.26385 1.50169 1.24832 0.94598 0.98640 0.95005 0.86741 0.80207 0.84697 0.77521 1.19997 1.21253 1.21094 1.21577 0.92886 0.91926 1.51298 0.92788 1.20189 0.91462 0.84994 0.98870 1.62515 1.16720 1.47666 0.99224 1.20849 0.92587 1.01271 0.87827 1.21286 0.93708 0.88872 0.94291 1.21920 1.00885 0.97452 0.98332 1.21443 0.94923 0.99191 0.95571 1.22047 1.01452 0.94982 1.02497 1.22800 0.95522 0.95084 0.92434 1.67751 1.03708 1.36718 1.07515 1.21984 0.93823 1.00435 0.90035 1.22089 0.95516 0.99134 0.93675 0.89269 1.22767 1.01264 1.01403 0.76932 1.46492 1.26743 1.55236 1.09885 1.20955 0.81428 0.77241 0.89952 1.90696 1.71471 1.59447 1.22070 1.22359 0.99593 1.03628 0.93578 0.93098 0.94517 0.93168 0.91524 0.91405 0.85401 0.85696 0.85686 0.83426 0.92273 0.92365 0.88247 0.89837 0.75761 0.88571 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.42 13.29 55.43 0.74 -23.68 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.88 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.54 -13.22 6.36 -34.44 -0.22 -13.44 16 8 H 0.05 1.33 6.03 -52.48 -0.32 1.01 16 9 C 0.17 3.84 4.42 -4.98 -0.02 3.82 16 10 N -0.54 -9.87 4.60 -237.51 -1.09 -10.97 16 11 C 0.10 1.81 5.15 -4.98 -0.03 1.78 16 12 C 0.16 2.75 5.88 -82.59 -0.49 2.27 16 13 C -0.17 -2.36 9.72 -39.44 -0.38 -2.74 16 14 C -0.09 -1.07 10.18 -39.28 -0.40 -1.47 16 15 C -0.19 -2.48 10.11 -39.44 -0.40 -2.88 16 16 C 0.10 1.60 11.18 -17.55 -0.20 1.40 16 17 N -0.45 -8.76 8.85 -9.48 -0.08 -8.85 16 18 C 0.07 1.04 4.37 -3.83 -0.02 1.03 16 19 C -0.08 -1.24 3.33 -88.87 -0.30 -1.53 16 20 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 21 C 0.10 1.62 5.42 -3.01 -0.02 1.61 16 22 N -0.73 -11.25 6.24 -59.09 -0.37 -11.62 16 23 C 0.52 8.54 8.43 -10.86 -0.09 8.45 16 24 O -0.56 -11.05 18.03 5.56 0.10 -10.95 16 25 C -0.15 -2.04 6.41 -26.75 -0.17 -2.21 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.04 0.85 4.34 -51.93 -0.23 0.63 16 28 H 0.05 1.31 6.33 -51.93 -0.33 0.98 16 29 H 0.07 0.95 7.61 -51.93 -0.40 0.56 16 30 H 0.07 1.37 6.57 -51.93 -0.34 1.03 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.06 0.80 7.69 -51.93 -0.40 0.40 16 36 H 0.06 1.04 5.79 -51.93 -0.30 0.74 16 37 H 0.10 1.91 6.34 -51.93 -0.33 1.58 16 38 H 0.08 1.43 6.84 -51.93 -0.36 1.08 16 39 H 0.40 5.66 8.96 -40.82 -0.37 5.30 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.10 1.30 7.90 -51.92 -0.41 0.89 16 LS Contribution 329.51 15.07 4.97 4.97 Total: -1.00 -30.60 329.51 -9.02 -39.63 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.44 Total: 7.99 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.82 Total: -2.13 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.81 Total: -55.11 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.10 Total: -10.95 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.60 -9.02 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595340299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.199 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds