Wall clock time and date at job start Tue Mar 31 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48494 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46678 * 299.99943 * 3 2 1 6 6 H 1.48491 * 109.47066 * 59.99878 * 3 2 1 7 7 C 1.37877 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00401 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47276 * 184.86532 * 9 7 2 11 11 C 1.46901 * 111.00081 * 64.07341 * 10 9 7 12 12 C 1.50690 * 109.47393 * 71.82547 * 11 10 9 13 13 C 1.38234 * 119.61738 * 95.36078 * 12 11 10 14 14 C 1.38631 * 119.16123 * 179.71174 * 13 12 11 15 15 C 1.38673 * 118.41967 * 0.54673 * 14 13 12 16 16 C 1.38188 * 119.16148 * 359.73665 * 15 14 13 17 17 N 1.31852 * 119.62261 * 275.63091 * 12 11 10 18 18 C 1.46894 * 111.00048 * 300.11456 * 10 9 7 19 19 C 1.53004 * 109.47399 * 286.28942 * 18 10 9 20 20 H 1.08994 * 110.87917 * 310.18107 * 19 18 10 21 21 C 1.54695 * 111.08296 * 74.04061 * 19 18 10 22 22 N 1.46756 * 105.53098 * 143.37673 * 21 19 18 23 23 C 1.34422 * 111.30478 * 343.08047 * 22 21 19 24 24 O 1.21282 * 124.94167 * 180.37098 * 23 22 21 25 25 C 1.51280 * 110.11235 * 0.40474 * 23 22 21 26 26 H 0.97004 * 120.00101 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46849 * 64.86421 * 9 7 2 28 28 H 1.09003 * 109.47095 * 304.86718 * 9 7 2 29 29 H 1.09002 * 109.47048 * 191.83460 * 11 10 9 30 30 H 1.09004 * 109.46592 * 311.82449 * 11 10 9 31 31 H 1.07995 * 120.41942 * 359.97438 * 13 12 11 32 32 H 1.07991 * 120.78863 * 180.30923 * 14 13 12 33 33 H 1.07995 * 120.42361 * 179.75209 * 15 14 13 34 34 H 1.08000 * 119.61349 * 179.97438 * 16 15 14 35 35 H 1.09007 * 109.47355 * 166.28943 * 18 10 9 36 36 H 1.09001 * 109.47273 * 46.28829 * 18 10 9 37 37 H 1.08996 * 110.13689 * 24.39612 * 21 19 18 38 38 H 1.08999 * 110.29050 * 262.43956 * 21 19 18 39 39 H 0.97005 * 124.34812 * 163.09107 * 22 21 19 40 40 H 1.08994 * 110.48435 * 134.93690 * 25 23 22 41 41 H 1.09011 * 110.48129 * 257.44253 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2013 -3.6133 0.1163 11 6 2.9069 -3.5705 1.4041 12 6 1.9583 -3.9557 2.5097 13 6 1.9218 -5.2643 2.9537 14 6 1.0498 -5.6069 3.9755 15 6 0.2352 -4.6186 4.5071 16 6 0.3230 -3.3329 4.0080 17 7 1.1687 -3.0418 3.0389 18 6 3.1508 -3.6150 -1.0045 19 6 2.4422 -4.0955 -2.2726 20 1 1.9011 -5.0233 -2.0874 21 6 1.4961 -3.0050 -2.8285 22 7 1.5902 -3.1106 -4.2892 23 6 2.6786 -3.8073 -4.6594 24 8 2.9989 -4.0377 -5.8063 25 6 3.4452 -4.2628 -3.4374 26 1 -0.4850 0.8401 -0.0004 27 1 0.6909 -2.5954 -0.9307 28 1 0.5608 -2.5204 0.8429 29 1 3.7436 -4.2689 1.3833 30 1 3.2801 -2.5617 1.5804 31 1 2.5676 -6.0094 2.5131 32 1 1.0033 -6.6202 4.3460 33 1 -0.4589 -4.8505 5.3013 34 1 -0.3083 -2.5576 4.4164 35 1 3.9808 -4.2839 -0.7766 36 1 3.5303 -2.6052 -1.1608 37 1 1.8253 -2.0194 -2.4995 38 1 0.4728 -3.1902 -2.5020 39 1 0.9494 -2.7268 -4.9081 40 1 3.7404 -5.3070 -3.5396 41 1 4.3211 -3.6333 -3.2801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595340299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:17 Heat of formation + Delta-G solvation = -10.912446 kcal Electronic energy + Delta-G solvation = -23283.403783 eV Core-core repulsion = 19969.378853 eV Total energy + Delta-G solvation = -3314.024930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32816 -40.87996 -38.72699 -36.92106 -34.49525 -33.42707 -32.99437 -31.95107 -29.13402 -28.70912 -26.94546 -25.89566 -24.17755 -23.36149 -21.79483 -21.45606 -21.12941 -18.65277 -18.14795 -17.50788 -17.16336 -16.95214 -16.56752 -16.23531 -16.12808 -15.92498 -15.61974 -14.72187 -14.67054 -14.36919 -14.14158 -14.01946 -13.81749 -13.76278 -13.18271 -13.02028 -12.78439 -12.65005 -12.61909 -12.26711 -12.03057 -11.96161 -11.66753 -11.53630 -11.44795 -10.88059 -10.60090 -10.40987 -10.03113 -9.97342 -9.74529 -8.88162 -8.00473 -6.11539 0.38223 0.62333 1.35754 1.40607 1.47081 1.59956 2.44783 2.51004 2.96260 3.27798 3.44596 3.55451 3.68788 3.81089 4.04386 4.15035 4.18387 4.31519 4.40764 4.46064 4.62836 4.67943 4.73659 4.81619 4.87064 4.93940 5.00326 5.06034 5.12899 5.16595 5.41845 5.45246 5.46092 5.54867 5.62208 5.83784 5.97374 6.04024 6.09166 6.23536 6.37899 6.66870 7.07588 7.27421 7.43234 7.55408 9.02037 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.006115 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.956342 B = 4577.839069 C = 6345.720273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.187 3.813 10 N -0.531 5.531 11 C 0.105 3.895 12 C 0.125 3.875 13 C -0.160 4.160 14 C -0.080 4.080 15 C -0.177 4.177 16 C 0.070 3.930 17 N -0.505 5.505 18 C 0.067 3.933 19 C -0.074 4.074 20 H 0.101 0.899 21 C 0.106 3.894 22 N -0.725 5.725 23 C 0.513 3.487 24 O -0.592 6.592 25 C -0.138 4.138 26 H 0.256 0.744 27 H 0.029 0.971 28 H 0.015 0.985 29 H 0.105 0.895 30 H 0.031 0.969 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.124 0.876 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -12.608 5.376 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.218 1.218 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.061 3.939 10 N -0.255 5.255 11 C -0.023 4.023 12 C -0.013 4.013 13 C -0.180 4.180 14 C -0.106 4.106 15 C -0.197 4.197 16 C -0.087 4.087 17 N -0.214 5.214 18 C -0.062 4.062 19 C -0.094 4.094 20 H 0.119 0.881 21 C -0.017 4.017 22 N -0.377 5.377 23 C 0.301 3.699 24 O -0.474 6.474 25 C -0.178 4.178 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.123 0.877 30 H 0.049 0.951 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.166 0.834 35 H 0.115 0.885 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.247 0.753 40 H 0.142 0.858 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.913 -12.231 4.557 13.626 hybrid contribution -0.133 1.959 0.153 1.969 sum 3.780 -10.272 4.709 11.915 Atomic orbital electron populations 1.70046 1.07031 1.26613 1.52370 1.25459 0.95189 1.01386 0.95653 0.85933 0.79492 0.81741 0.76983 1.19262 1.21170 1.21784 1.21825 0.92801 0.92784 1.48705 0.92998 1.19792 0.91685 0.85662 0.96787 1.62447 1.17218 1.45093 1.00700 1.20907 0.93696 1.00275 0.87431 1.21387 0.94482 0.90339 0.95127 1.22198 1.01168 0.96363 0.98291 1.21952 0.93382 1.00862 0.94373 1.22389 1.01351 0.93581 1.02363 1.23013 0.95857 0.97030 0.92801 1.67593 1.05488 1.38975 1.09391 1.22071 0.94327 1.00194 0.89580 1.22027 0.95321 0.98546 0.93468 0.88063 1.22530 1.01094 1.00648 0.77428 1.46496 1.26843 1.54830 1.09574 1.21452 0.81451 0.76703 0.90287 1.90681 1.72264 1.60831 1.23656 1.22359 0.99007 1.05508 0.90906 0.93496 0.95332 0.96665 0.87735 0.95095 0.82528 0.81481 0.82253 0.83384 0.88544 0.94613 0.91327 0.90990 0.75289 0.85762 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.84 13.29 21.45 0.28 -52.56 16 2 C 0.02 1.19 5.46 84.66 0.46 1.65 16 3 Si 0.93 43.53 29.54 68.60 2.03 45.55 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.52 -26.39 6.36 25.60 0.16 -26.23 16 8 H 0.05 2.61 6.03 -2.91 -0.02 2.59 16 9 C 0.19 8.70 4.42 85.56 0.38 9.07 16 10 N -0.53 -19.11 4.60 -905.36 -4.17 -23.28 16 11 C 0.11 3.60 5.15 85.55 0.44 4.04 16 12 C 0.12 4.29 5.88 42.55 0.25 4.54 16 13 C -0.16 -4.08 9.72 22.36 0.22 -3.87 16 14 C -0.08 -1.71 10.18 22.47 0.23 -1.48 16 15 C -0.18 -4.21 10.11 22.36 0.23 -3.98 16 16 C 0.07 2.28 11.18 84.67 0.95 3.22 16 17 N -0.50 -20.28 8.85 -183.89 -1.63 -21.91 16 18 C 0.07 1.97 4.37 86.31 0.38 2.35 16 19 C -0.07 -2.01 3.33 -9.66 -0.03 -2.05 16 20 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 21 C 0.11 3.49 5.42 86.91 0.47 3.96 16 22 N -0.72 -22.06 6.24 -459.45 -2.87 -24.92 16 23 C 0.51 16.21 8.43 87.90 0.74 16.95 16 24 O -0.59 -22.88 18.03 -3.04 -0.05 -22.94 16 25 C -0.14 -3.32 6.41 30.58 0.20 -3.12 16 26 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.03 1.38 4.34 -2.38 -0.01 1.37 16 28 H 0.02 0.83 6.33 -2.39 -0.02 0.81 16 29 H 0.10 2.69 7.61 -2.39 -0.02 2.67 16 30 H 0.03 1.27 6.57 -2.39 -0.02 1.26 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.17 2.17 8.06 -2.92 -0.02 2.15 16 33 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 35 H 0.10 2.19 7.69 -2.38 -0.02 2.17 16 36 H 0.04 1.24 5.79 -2.39 -0.01 1.23 16 37 H 0.07 2.71 6.34 -2.39 -0.02 2.69 16 38 H 0.07 2.53 6.84 -2.39 -0.02 2.51 16 39 H 0.41 11.49 8.96 -92.70 -0.83 10.66 16 40 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.12 2.55 7.90 -2.38 -0.02 2.54 16 Total: -1.00 -69.90 329.51 -1.11 -71.01 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.23 Total: 23.97 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 5.07 Total: 5.07 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -8.38 Total: -122.66 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.90 -1.11 -71.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595340299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.098 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds