Wall clock time and date at job start Tue Mar 31 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99769 * 2 1 4 4 H 1.48493 * 109.47145 * 269.99383 * 3 2 1 5 5 H 1.48499 * 109.47031 * 30.00009 * 3 2 1 6 6 H 1.48502 * 109.46939 * 149.99685 * 3 2 1 7 7 C 1.37876 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99789 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46702 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99786 * 170.00162 * 10 9 7 12 12 C 1.53233 * 109.33861 * 187.25449 * 11 10 9 13 13 N 1.47076 * 108.52370 * 306.16904 * 12 11 10 14 14 C 1.34781 * 120.88191 * 231.19016 * 13 12 11 15 15 O 1.21277 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99723 * 179.97438 * 14 13 12 17 17 C 1.50702 * 109.46850 * 179.97438 * 16 14 13 18 18 C 1.38677 * 120.41881 * 90.00003 * 17 16 14 19 19 C 1.38628 * 118.41857 * 179.97438 * 18 17 16 20 20 C 1.38215 * 119.16579 * 0.02562 * 19 18 17 21 21 N 1.31854 * 120.76332 * 359.97438 * 20 19 18 22 22 C 1.31888 * 121.72838 * 0.02562 * 21 20 19 23 23 C 1.47074 * 118.23722 * 51.45698 * 13 12 11 24 24 C 1.46900 * 111.00127 * 294.29992 * 10 9 7 25 25 H 0.97003 * 120.00056 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47234 * 60.00474 * 9 7 2 27 27 H 1.08999 * 109.47374 * 300.00105 * 9 7 2 28 28 H 1.09004 * 109.49336 * 67.29028 * 11 10 9 29 29 H 1.09006 * 109.49080 * 307.21353 * 11 10 9 30 30 H 1.09002 * 109.62569 * 186.45602 * 12 11 10 31 31 H 1.09003 * 109.62710 * 65.88050 * 12 11 10 32 32 H 1.09004 * 109.47227 * 60.00373 * 16 14 13 33 33 H 1.08994 * 109.47370 * 299.99526 * 16 14 13 34 34 H 1.08003 * 120.78604 * 359.96123 * 18 17 16 35 35 H 1.08005 * 120.41354 * 179.97438 * 19 18 17 36 36 H 1.07995 * 119.62265 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.61890 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.62934 * 68.25083 * 23 13 12 39 39 H 1.08996 * 109.63123 * 188.83440 * 23 13 12 40 40 H 1.08996 * 109.49305 * 292.70520 * 24 10 9 41 41 H 1.08998 * 109.49053 * 52.79189 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0012 -2.5790 0.0022 11 6 5.4502 -2.6253 -0.2353 12 6 5.8899 -4.0830 -0.4070 13 7 5.4259 -4.8514 0.7581 14 6 6.2758 -5.6307 1.4559 15 8 7.4402 -5.7056 1.1253 16 6 5.7791 -6.4090 2.6469 17 6 6.9182 -7.1940 3.2446 18 6 7.7113 -6.6361 4.2360 19 6 8.7477 -7.3953 4.7570 20 6 8.9549 -8.6737 4.2742 21 7 8.1806 -9.1719 3.3304 22 6 7.1857 -8.4787 2.8117 23 6 4.0086 -4.7514 1.1380 24 6 3.6441 -3.2626 1.2525 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6799 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 5.9723 -2.1854 0.6145 29 1 5.6887 -2.0645 -1.1391 30 1 6.9771 -4.1326 -0.4690 31 1 5.4495 -4.4938 -1.3155 32 1 4.9926 -7.0944 2.3308 33 1 5.3824 -5.7194 3.3919 34 1 7.5261 -5.6339 4.5935 35 1 9.3855 -6.9925 5.5300 36 1 9.7598 -9.2717 4.6751 37 1 6.5730 -8.9202 2.0396 38 1 3.3907 -5.2251 0.3752 39 1 3.8512 -5.2430 2.0980 40 1 4.1914 -2.8140 2.0814 41 1 2.5728 -3.1642 1.4276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602206709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:32 Heat of formation + Delta-G solvation = -8.860319 kcal Electronic energy + Delta-G solvation = -22505.337865 eV Core-core repulsion = 19191.401922 eV Total energy + Delta-G solvation = -3313.935943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56230 -40.67711 -38.96639 -35.97045 -34.68342 -34.35004 -32.87234 -32.15560 -30.56656 -29.04496 -27.06682 -24.73324 -24.50070 -23.86916 -23.04954 -21.83814 -19.87911 -18.93643 -18.27691 -18.00560 -17.44007 -17.00081 -16.56389 -16.31387 -16.05074 -15.92977 -15.57921 -15.16529 -14.96154 -14.49009 -14.45680 -14.35834 -14.16973 -13.94612 -13.61921 -13.26590 -13.04349 -12.88222 -12.51838 -12.45632 -12.28934 -12.21008 -11.93320 -11.84539 -11.41269 -11.03091 -10.77352 -10.66208 -10.40498 -9.89094 -9.77224 -9.05868 -8.27548 -6.30406 0.16199 0.36803 1.35427 1.36601 1.46005 1.58443 1.97387 2.34291 2.88034 3.05190 3.16022 3.49798 3.61350 3.75069 3.91551 4.00346 4.04654 4.09581 4.11607 4.22602 4.29262 4.42002 4.48221 4.52562 4.57450 4.73383 4.76379 4.81000 4.85747 4.90446 4.93729 5.06591 5.14095 5.19233 5.31631 5.44033 5.53170 5.79569 5.93102 6.29920 6.41670 6.60392 6.76148 7.03707 7.11830 7.33388 8.88280 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035461 B = 0.003010 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.419410 B = 9299.420688 C = 9354.868643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.512 4.512 8 H 0.047 0.953 9 C 0.172 3.828 10 N -0.541 5.541 11 C 0.043 3.957 12 C 0.124 3.876 13 N -0.611 5.611 14 C 0.516 3.484 15 O -0.582 6.582 16 C -0.093 4.093 17 C -0.124 4.124 18 C -0.075 4.075 19 C -0.171 4.171 20 C 0.081 3.919 21 N -0.514 5.514 22 C 0.094 3.906 23 C 0.119 3.881 24 C 0.048 3.952 25 H 0.266 0.734 26 H -0.015 1.015 27 H 0.027 0.973 28 H 0.024 0.976 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.026 0.974 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.596 -13.470 9.339 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.045 3.955 10 N -0.265 5.265 11 C -0.086 4.086 12 C 0.001 3.999 13 N -0.343 5.343 14 C 0.306 3.694 15 O -0.462 6.462 16 C -0.133 4.133 17 C -0.126 4.126 18 C -0.101 4.101 19 C -0.191 4.191 20 C -0.076 4.076 21 N -0.223 5.223 22 C -0.062 4.062 23 C -0.004 4.004 24 C -0.081 4.081 25 H 0.075 0.925 26 H 0.003 0.997 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.194 0.806 37 H 0.178 0.822 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.045 0.955 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.986 -14.498 8.477 22.509 hybrid contribution 0.049 2.432 0.616 2.509 sum 15.035 -12.066 9.093 21.315 Atomic orbital electron populations 1.70028 1.07942 1.28027 1.52535 1.25753 0.95502 1.02803 0.94544 0.85807 0.79291 0.79259 0.79106 1.19248 1.20911 1.17870 1.21220 0.90699 0.93459 1.49693 0.93440 1.19933 0.94542 0.86151 0.94900 1.61811 1.12128 1.17178 1.35411 1.22482 0.88193 0.96950 1.01013 1.21598 1.00160 0.89698 0.88433 1.48319 1.10579 1.45329 1.30105 1.21032 0.85077 0.79045 0.84223 1.90685 1.19037 1.66038 1.70481 1.20708 0.97423 0.99680 0.95451 1.20481 0.98548 0.95791 0.97765 1.21804 0.93599 1.00277 0.94450 1.22439 0.98933 0.95600 1.02080 1.23228 0.97586 0.94285 0.92470 1.67675 1.05548 1.38276 1.10815 1.22844 0.94356 0.91463 0.97560 1.22137 0.79732 0.95386 1.03121 1.22467 1.01584 0.94241 0.89794 0.92458 0.99740 0.95461 0.95816 0.89427 0.89371 0.90366 0.84740 0.85299 0.83570 0.82072 0.80586 0.82168 0.89970 0.85863 0.95539 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 2 C 0.01 0.66 5.47 84.65 0.46 1.12 16 3 Si 0.94 42.59 27.47 68.60 1.88 44.48 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.51 -27.90 8.96 25.60 0.23 -27.67 16 8 H 0.05 2.84 7.37 -2.91 -0.02 2.82 16 9 C 0.17 7.78 3.79 85.56 0.32 8.10 16 10 N -0.54 -20.41 4.62 -898.85 -4.15 -24.56 16 11 C 0.04 1.32 5.62 86.38 0.49 1.81 16 12 C 0.12 3.39 6.60 86.35 0.57 3.96 16 13 N -0.61 -15.23 3.00 -817.08 -2.45 -17.69 16 14 C 0.52 12.66 7.70 87.65 0.67 13.34 16 15 O -0.58 -18.93 15.49 -3.02 -0.05 -18.97 16 16 C -0.09 -1.48 4.22 29.10 0.12 -1.36 16 17 C -0.12 -2.40 4.39 -19.77 -0.09 -2.49 16 18 C -0.08 -1.35 9.86 22.47 0.22 -1.13 16 19 C -0.17 -2.72 10.11 22.36 0.23 -2.50 16 20 C 0.08 1.47 11.18 84.68 0.95 2.42 16 21 N -0.51 -11.94 10.36 -195.85 -2.03 -13.97 16 22 C 0.09 2.02 10.86 84.67 0.92 2.94 16 23 C 0.12 2.71 6.53 86.51 0.57 3.27 16 24 C 0.05 1.55 5.47 86.54 0.47 2.03 16 25 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 26 H -0.02 -0.69 7.18 -2.38 -0.02 -0.71 16 27 H 0.03 1.23 7.40 -2.39 -0.02 1.21 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 2.60 7.99 -2.38 -0.02 2.58 16 30 H 0.09 2.45 7.06 -2.39 -0.02 2.43 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.13 1.44 7.94 -2.39 -0.02 1.42 16 33 H 0.13 1.50 7.63 -2.39 -0.02 1.48 16 34 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.12 1.82 6.02 -2.39 -0.01 1.80 16 40 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 2.95 6.67 -2.39 -0.02 2.94 16 Total: -1.00 -72.87 334.79 0.60 -72.27 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.96 Total: 11.16 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.14 Total: 3.84 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -8.34 Total: -112.77 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.48 kcal Total: -72.87 0.60 -72.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.409 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds