Wall clock time and date at job start Tue Mar 31 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00142 * 2 1 4 4 H 1.48502 * 109.46917 * 270.00127 * 3 2 1 5 5 H 1.48495 * 109.46909 * 29.99748 * 3 2 1 6 6 H 1.48496 * 109.47444 * 149.99966 * 3 2 1 7 7 C 1.37879 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99716 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00510 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00098 * 169.99870 * 10 9 7 12 12 C 1.53236 * 109.34129 * 187.25524 * 11 10 9 13 13 N 1.47073 * 108.52338 * 306.17153 * 12 11 10 14 14 C 1.34772 * 120.88435 * 231.18748 * 13 12 11 15 15 O 1.21281 * 119.99940 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 12 17 17 C 1.50706 * 109.47001 * 179.97438 * 16 14 13 18 18 C 1.38640 * 120.79101 * 269.72132 * 17 16 14 19 19 C 1.38210 * 119.16239 * 179.80192 * 18 17 16 20 20 N 1.31874 * 120.76187 * 0.47884 * 19 18 17 21 21 C 1.31866 * 121.72177 * 359.75022 * 20 19 18 22 22 C 1.38204 * 120.76954 * 0.02562 * 21 20 19 23 23 C 1.47080 * 118.23531 * 51.45905 * 13 12 11 24 24 C 1.46893 * 111.00455 * 294.30455 * 10 9 7 25 25 H 0.97001 * 119.99976 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47073 * 59.99871 * 9 7 2 27 27 H 1.09002 * 109.46935 * 300.00203 * 9 7 2 28 28 H 1.09001 * 109.48954 * 67.29707 * 11 10 9 29 29 H 1.08996 * 109.49334 * 307.21878 * 11 10 9 30 30 H 1.09001 * 109.62894 * 186.46353 * 12 11 10 31 31 H 1.09002 * 109.62536 * 65.88427 * 12 11 10 32 32 H 1.09000 * 109.46978 * 60.00374 * 16 14 13 33 33 H 1.09000 * 109.46976 * 299.99619 * 16 14 13 34 34 H 1.08003 * 120.42416 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.62161 * 180.20307 * 19 18 17 36 36 H 1.08011 * 119.61124 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.41928 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.63264 * 68.25233 * 23 13 12 39 39 H 1.08998 * 109.63023 * 188.83208 * 23 13 12 40 40 H 1.08998 * 109.49448 * 292.70596 * 24 10 9 41 41 H 1.09006 * 109.49331 * 52.78267 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5790 0.0013 11 6 5.4500 -2.6254 -0.2374 12 6 5.8896 -4.0833 -0.4088 13 7 5.4265 -4.8511 0.7570 14 6 6.2768 -5.6302 1.4545 15 8 7.4410 -5.7053 1.1230 16 6 5.7808 -6.4089 2.6455 17 6 6.9205 -7.1934 3.2428 18 6 7.1926 -8.4848 2.8181 19 6 8.2487 -9.1721 3.3860 20 7 8.9867 -8.6167 4.3272 21 6 8.7540 -7.3926 4.7588 22 6 7.7181 -6.6430 4.2344 23 6 4.0094 -4.7510 1.1379 24 6 3.6451 -3.2622 1.2520 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6796 0.8894 27 1 3.8745 -0.6808 -0.8905 28 1 5.9727 -2.1853 0.6118 29 1 5.6877 -2.0651 -1.1415 30 1 6.9767 -4.1330 -0.4715 31 1 5.4484 -4.4944 -1.3168 32 1 4.9945 -7.0945 2.3295 33 1 5.3840 -5.7194 3.3907 34 1 6.5887 -8.9470 2.0511 35 1 8.4693 -10.1773 3.0584 36 1 9.3799 -6.9712 5.5316 37 1 7.5323 -5.6411 4.5923 38 1 3.3910 -5.2250 0.3758 39 1 3.8528 -5.2422 2.0982 40 1 4.1929 -2.8132 2.0805 41 1 2.5738 -3.1636 1.4280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:16 Heat of formation + Delta-G solvation = -8.760093 kcal Electronic energy + Delta-G solvation = -22495.996744 eV Core-core repulsion = 19182.065147 eV Total energy + Delta-G solvation = -3313.931597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56402 -40.68553 -38.99007 -35.98565 -34.92873 -34.39945 -32.27973 -32.09618 -30.63688 -29.45583 -27.13652 -24.75434 -24.38275 -23.89033 -23.05238 -21.86119 -19.91968 -18.94050 -18.30251 -17.69314 -17.44799 -16.72295 -16.57410 -16.42850 -16.27652 -16.04578 -15.69219 -15.17778 -14.94996 -14.63290 -14.47252 -14.40611 -14.33270 -13.81072 -13.53706 -13.20657 -13.09523 -12.88254 -12.52882 -12.36915 -12.28869 -12.21857 -11.94133 -11.85064 -11.41668 -11.09809 -10.77621 -10.44465 -10.44237 -10.04567 -9.78824 -9.06639 -8.27858 -6.30687 0.24594 0.26710 1.35180 1.36548 1.45830 1.55710 1.95928 2.34057 2.88708 3.04887 3.15373 3.49724 3.58609 3.64405 3.83336 3.99004 4.04169 4.17966 4.21908 4.25044 4.28567 4.40049 4.46369 4.51289 4.55340 4.72544 4.76160 4.80920 4.85924 4.90962 4.92916 5.03066 5.06981 5.13694 5.37186 5.42450 5.52819 5.80522 5.92517 6.29094 6.39646 6.59791 6.75826 7.04774 7.08889 7.33137 8.87954 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.003003 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.031015 B = 9320.708727 C = 9373.559039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.512 4.512 8 H 0.048 0.952 9 C 0.172 3.828 10 N -0.540 5.540 11 C 0.042 3.958 12 C 0.124 3.876 13 N -0.610 5.610 14 C 0.518 3.482 15 O -0.581 6.581 16 C -0.100 4.100 17 C -0.032 4.032 18 C -0.165 4.165 19 C 0.085 3.915 20 N -0.516 5.516 21 C 0.085 3.915 22 C -0.169 4.169 23 C 0.119 3.881 24 C 0.047 3.953 25 H 0.266 0.734 26 H -0.015 1.015 27 H 0.027 0.973 28 H 0.023 0.977 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.026 0.974 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.959 -14.613 7.240 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.045 3.955 10 N -0.265 5.265 11 C -0.087 4.087 12 C 0.001 3.999 13 N -0.343 5.343 14 C 0.308 3.692 15 O -0.461 6.461 16 C -0.139 4.139 17 C -0.040 4.040 18 C -0.184 4.184 19 C -0.071 4.071 20 N -0.226 5.226 21 C -0.071 4.071 22 C -0.189 4.189 23 C -0.004 4.004 24 C -0.081 4.081 25 H 0.075 0.925 26 H 0.002 0.998 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.193 0.807 36 H 0.190 0.810 37 H 0.164 0.836 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.044 0.956 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.877 -15.260 7.045 21.796 hybrid contribution -0.447 2.125 0.036 2.172 sum 13.430 -13.134 7.081 20.075 Atomic orbital electron populations 1.70024 1.07936 1.28030 1.52521 1.25746 0.95497 1.02789 0.94542 0.85812 0.79288 0.79284 0.79112 1.19230 1.20923 1.17898 1.21218 0.90690 0.93461 1.49706 0.93415 1.19930 0.94550 0.86151 0.94904 1.61805 1.12150 1.17195 1.35333 1.22486 0.88195 0.96981 1.01028 1.21605 1.00199 0.89671 0.88381 1.48307 1.10584 1.45312 1.30065 1.20919 0.85072 0.79104 0.84143 1.90696 1.18972 1.66042 1.70423 1.20821 0.97522 0.99904 0.95661 1.19965 0.95600 0.94213 0.94262 1.22277 0.99735 0.95141 1.01291 1.23143 0.91114 1.00869 0.91973 1.67671 1.28898 1.12918 1.13074 1.23086 0.95599 0.89907 0.98549 1.22255 0.96671 1.01832 0.98097 1.22141 0.79726 0.95392 1.03116 1.22469 1.01607 0.94254 0.89800 0.92453 0.99766 0.95450 0.95855 0.89392 0.89336 0.90252 0.84463 0.85233 0.82987 0.80699 0.80979 0.83634 0.89869 0.85901 0.95584 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.96 21.45 0.30 -56.40 16 2 C 0.01 0.67 5.47 84.66 0.46 1.13 16 3 Si 0.94 42.52 27.47 68.60 1.88 44.40 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 7 C -0.51 -27.81 8.96 25.60 0.23 -27.58 16 8 H 0.05 2.84 7.37 -2.91 -0.02 2.82 16 9 C 0.17 7.75 3.79 85.56 0.32 8.07 16 10 N -0.54 -20.24 4.62 -898.91 -4.15 -24.39 16 11 C 0.04 1.30 5.62 86.38 0.49 1.78 16 12 C 0.12 3.34 6.60 86.35 0.57 3.91 16 13 N -0.61 -14.91 3.00 -817.08 -2.45 -17.36 16 14 C 0.52 12.42 7.70 87.66 0.68 13.10 16 15 O -0.58 -18.57 15.49 -3.03 -0.05 -18.61 16 16 C -0.10 -1.55 4.24 29.10 0.12 -1.42 16 17 C -0.03 -0.60 4.41 -19.67 -0.09 -0.69 16 18 C -0.16 -2.94 9.82 22.36 0.22 -2.72 16 19 C 0.09 1.62 11.18 84.68 0.95 2.57 16 20 N -0.52 -11.63 10.36 -195.83 -2.03 -13.66 16 21 C 0.08 1.68 11.18 84.68 0.95 2.62 16 22 C -0.17 -3.20 9.82 22.36 0.22 -2.98 16 23 C 0.12 2.65 6.53 86.50 0.57 3.22 16 24 C 0.05 1.53 5.47 86.54 0.47 2.00 16 25 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 26 H -0.02 -0.70 7.18 -2.39 -0.02 -0.72 16 27 H 0.03 1.23 7.40 -2.39 -0.02 1.21 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 2.58 7.99 -2.39 -0.02 2.56 16 30 H 0.09 2.42 7.06 -2.39 -0.02 2.40 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.14 1.35 7.95 -2.39 -0.02 1.33 16 33 H 0.13 1.49 7.63 -2.39 -0.02 1.47 16 34 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.17 2.48 8.06 -2.90 -0.02 2.46 16 37 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.12 1.76 6.02 -2.39 -0.01 1.74 16 40 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 2.94 6.67 -2.38 -0.02 2.92 16 Total: -1.00 -72.43 334.83 0.62 -71.81 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.96 Total: 11.20 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.16 Total: 3.02 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -8.34 Total: -111.82 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.05 Total: -18.61 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.88 Total: 44.40 kcal Total: -72.43 0.62 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.051 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds