Wall clock time and date at job start Tue Mar 31 2020 03:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99649 * 2 1 4 4 H 1.48502 * 109.46629 * 269.99446 * 3 2 1 5 5 H 1.48496 * 109.47255 * 29.99417 * 3 2 1 6 6 H 1.48497 * 109.47116 * 149.99615 * 3 2 1 7 7 C 1.38945 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00206 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99796 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00207 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99767 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.47252 * 180.02562 * 12 10 9 14 14 C 1.34746 * 117.00464 * 180.02562 * 13 12 10 15 15 O 1.21503 * 119.99925 * 0.27079 * 14 13 12 16 16 C 1.47496 * 120.00300 * 180.02562 * 14 13 12 17 17 C 1.40138 * 119.92996 * 359.97438 * 16 14 13 18 18 C 1.36274 * 120.40570 * 179.97438 * 17 16 14 19 19 C 1.39850 * 120.04732 * 0.02562 * 18 17 16 20 20 N 1.35826 * 133.61610 * 180.02562 * 19 18 17 21 21 C 1.30024 * 108.86239 * 179.97438 * 20 19 18 22 22 O 1.34144 * 110.32044 * 359.97438 * 21 20 19 23 23 C 1.35164 * 108.11562 * 359.97438 * 22 21 20 24 24 C 1.38271 * 133.89002 * 180.33598 * 23 22 21 25 25 H 0.97004 * 120.00626 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.46831 * 60.00751 * 12 10 9 28 28 H 1.08998 * 109.47254 * 300.00384 * 12 10 9 29 29 H 1.08003 * 119.80359 * 359.97438 * 17 16 14 30 30 H 1.07999 * 119.97182 * 180.02562 * 18 17 16 31 31 H 1.07993 * 124.84326 * 180.02562 * 21 20 19 32 32 H 1.08004 * 120.19380 * 359.92380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0001 12 6 5.5608 -2.3703 0.0011 13 8 6.0449 -3.7392 0.0005 14 6 7.3807 -3.9157 0.0009 15 8 8.1209 -2.9522 0.0068 16 6 7.9446 -5.2787 -0.0002 17 6 7.0896 -6.3890 -0.0013 18 6 7.6001 -7.6525 -0.0028 19 6 8.9848 -7.8484 -0.0029 20 7 9.7748 -8.9532 -0.0047 21 6 11.0202 -8.5795 -0.0044 22 8 11.1048 -7.2407 -0.0029 23 6 9.8492 -6.7403 -0.0029 24 6 9.3277 -5.4597 -0.0077 25 1 -0.4851 0.8400 -0.0004 26 1 3.8649 -0.3631 0.0007 27 1 5.9241 -1.8565 0.8912 28 1 5.9241 -1.8564 -0.8889 29 1 6.0195 -6.2426 -0.0008 30 1 6.9347 -8.5032 -0.0040 31 1 11.8659 -9.2510 -0.0059 32 1 9.9874 -4.6045 -0.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:02 Heat of formation + Delta-G solvation = -66.311789 kcal Electronic energy + Delta-G solvation = -21235.419595 eV Core-core repulsion = 17549.607518 eV Total energy + Delta-G solvation = -3685.812077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.68950 -40.57436 -38.58564 -37.95379 -36.28255 -35.13986 -34.08861 -31.82861 -31.19255 -30.78315 -28.59125 -25.35797 -24.22671 -23.80757 -22.29679 -21.39162 -19.68482 -18.87474 -18.63293 -18.10051 -17.11702 -17.00201 -16.81947 -16.47417 -15.75110 -15.19455 -14.83764 -14.60511 -14.43370 -14.28932 -13.72832 -13.24652 -12.95293 -12.91775 -12.48917 -12.36808 -12.23407 -11.88567 -11.85668 -11.28266 -10.95163 -10.72395 -10.66714 -10.60734 -10.06876 -9.69717 -9.29567 -8.98954 -8.70291 -8.31463 -6.40939 -3.94068 -0.10095 0.81733 1.71570 1.94964 2.46791 2.60924 2.97455 3.02188 3.11166 3.34024 3.49237 3.52802 4.02155 4.04067 4.24670 4.57388 4.64278 4.67466 4.82046 4.99382 5.09105 5.27493 5.48792 5.50520 5.55876 5.63382 5.67679 5.82123 5.87689 6.18132 6.34587 7.09742 7.41897 7.64204 7.98551 8.45364 8.81661 9.27750 9.62679 10.71207 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.046749 B = 0.002798 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.805669 B =10004.314091 C =10587.970188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.123 0.877 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.557 6.557 12 C 0.059 3.941 13 O -0.316 6.316 14 C 0.510 3.490 15 O -0.506 6.506 16 C -0.093 4.093 17 C -0.061 4.061 18 C -0.072 4.072 19 C 0.051 3.949 20 N -0.487 5.487 21 C 0.241 3.759 22 O -0.211 6.211 23 C -0.008 4.008 24 C -0.022 4.022 25 H 0.276 0.724 26 H 0.373 0.627 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.259 0.741 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.091 -11.525 -0.043 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.439 6.439 12 C -0.019 4.019 13 O -0.230 6.230 14 C 0.355 3.645 15 O -0.396 6.396 16 C -0.094 4.094 17 C -0.080 4.080 18 C -0.091 4.091 19 C -0.061 4.061 20 N -0.216 5.216 21 C 0.011 3.989 22 O -0.102 6.102 23 C -0.058 4.058 24 C -0.041 4.041 25 H 0.086 0.914 26 H 0.206 0.794 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.179 0.821 30 H 0.165 0.835 31 H 0.275 0.725 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 21.420 -12.410 -0.041 24.756 hybrid contribution 1.060 2.121 0.017 2.371 sum 22.480 -10.289 -0.024 24.723 Atomic orbital electron populations 1.69610 1.05661 1.27797 1.48256 1.25040 0.95521 0.98081 0.97235 0.86680 0.79869 0.83862 0.79102 1.19398 1.19946 1.19327 1.19422 0.78630 0.96888 1.48720 0.85967 1.42029 1.07654 1.05702 1.66461 1.19146 0.86818 0.85182 0.85628 1.90605 1.68993 1.30672 1.53590 1.22818 0.95257 0.79937 1.03868 1.86587 1.21882 1.31563 1.82971 1.20807 0.81391 0.89105 0.73223 1.90847 1.60673 1.42130 1.45977 1.18773 0.92086 0.91255 1.07312 1.21275 1.01821 0.90278 0.94666 1.20081 0.90927 0.98146 0.99924 1.20137 0.95674 0.87874 1.02458 1.70654 1.01431 1.29649 1.19862 1.28448 0.97080 0.79687 0.93724 1.84550 1.28573 1.23140 1.73944 1.19913 0.82220 0.95975 1.07681 1.19796 0.93672 0.93528 0.97110 0.91359 0.79357 0.89140 0.89139 0.82066 0.83534 0.72545 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.50 0.77 -24.08 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.76 27.74 -169.99 -4.71 14.05 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 7 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.45 16 9 N -0.58 -13.40 5.09 -10.96 -0.06 -13.46 16 10 C 0.45 10.02 7.86 -10.98 -0.09 9.93 16 11 O -0.56 -14.77 16.08 -14.11 -0.23 -15.00 16 12 C 0.06 1.01 5.95 36.01 0.21 1.22 16 13 O -0.32 -5.35 8.98 -47.30 -0.42 -5.78 16 14 C 0.51 7.58 7.89 34.50 0.27 7.86 16 15 O -0.51 -8.16 16.12 -19.27 -0.31 -8.47 16 16 C -0.09 -1.15 5.88 -104.94 -0.62 -1.77 16 17 C -0.06 -0.69 9.53 -39.58 -0.38 -1.07 16 18 C -0.07 -0.75 10.03 -39.69 -0.40 -1.15 16 19 C 0.05 0.57 7.24 -84.63 -0.61 -0.05 16 20 N -0.49 -4.92 11.33 -12.47 -0.14 -5.07 16 21 C 0.24 1.59 13.12 52.00 0.68 2.27 16 22 O -0.21 -1.90 10.77 3.71 0.04 -1.86 16 23 C -0.01 -0.09 7.42 -38.70 -0.29 -0.37 16 24 C -0.02 -0.25 9.60 -39.10 -0.38 -0.62 16 25 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.16 1.82 7.58 -52.48 -0.40 1.43 16 30 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.26 0.14 8.06 -52.49 -0.42 -0.28 16 32 H 0.15 1.55 7.63 -52.48 -0.40 1.15 16 LS Contribution 300.04 15.07 4.52 4.52 Total: -1.00 -34.70 300.04 -4.65 -39.35 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -2.28 Total: 7.05 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.83 Total: 8.74 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.58 Total: -42.60 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.92 Total: -31.10 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.05 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.70 -4.65 -39.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.960 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds