Wall clock time and date at job start Tue Mar 31 2020 03:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99649 * 2 1 4 4 H 1.48502 * 109.46629 * 269.99446 * 3 2 1 5 5 H 1.48496 * 109.47255 * 29.99417 * 3 2 1 6 6 H 1.48497 * 109.47116 * 149.99615 * 3 2 1 7 7 C 1.38945 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00206 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99796 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00207 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99767 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.47252 * 180.02562 * 12 10 9 14 14 C 1.34746 * 117.00464 * 180.02562 * 13 12 10 15 15 O 1.21503 * 119.99925 * 0.27079 * 14 13 12 16 16 C 1.47496 * 120.00300 * 180.02562 * 14 13 12 17 17 C 1.40138 * 119.92996 * 359.97438 * 16 14 13 18 18 C 1.36274 * 120.40570 * 179.97438 * 17 16 14 19 19 C 1.39850 * 120.04732 * 0.02562 * 18 17 16 20 20 N 1.35826 * 133.61610 * 180.02562 * 19 18 17 21 21 C 1.30024 * 108.86239 * 179.97438 * 20 19 18 22 22 O 1.34144 * 110.32044 * 359.97438 * 21 20 19 23 23 C 1.35164 * 108.11562 * 359.97438 * 22 21 20 24 24 C 1.38271 * 133.89002 * 180.33598 * 23 22 21 25 25 H 0.97004 * 120.00626 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.46831 * 60.00751 * 12 10 9 28 28 H 1.08998 * 109.47254 * 300.00384 * 12 10 9 29 29 H 1.08003 * 119.80359 * 359.97438 * 17 16 14 30 30 H 1.07999 * 119.97182 * 180.02562 * 18 17 16 31 31 H 1.07993 * 124.84326 * 180.02562 * 21 20 19 32 32 H 1.08004 * 120.19380 * 359.92380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0001 12 6 5.5608 -2.3703 0.0011 13 8 6.0449 -3.7392 0.0005 14 6 7.3807 -3.9157 0.0009 15 8 8.1209 -2.9522 0.0068 16 6 7.9446 -5.2787 -0.0002 17 6 7.0896 -6.3890 -0.0013 18 6 7.6001 -7.6525 -0.0028 19 6 8.9848 -7.8484 -0.0029 20 7 9.7748 -8.9532 -0.0047 21 6 11.0202 -8.5795 -0.0044 22 8 11.1048 -7.2407 -0.0029 23 6 9.8492 -6.7403 -0.0029 24 6 9.3277 -5.4597 -0.0077 25 1 -0.4851 0.8400 -0.0004 26 1 3.8649 -0.3631 0.0007 27 1 5.9241 -1.8565 0.8912 28 1 5.9241 -1.8564 -0.8889 29 1 6.0195 -6.2426 -0.0008 30 1 6.9347 -8.5032 -0.0040 31 1 11.8659 -9.2510 -0.0059 32 1 9.9874 -4.6045 -0.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731243695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:02 Heat of formation + Delta-G solvation = -92.961439 kcal Electronic energy + Delta-G solvation = -21236.575210 eV Core-core repulsion = 17549.607518 eV Total energy + Delta-G solvation = -3686.967693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.40154 -41.77842 -40.24952 -38.98828 -37.55790 -36.07573 -35.87804 -33.85931 -32.01848 -31.70695 -30.03859 -26.75782 -25.59273 -24.63034 -23.05517 -22.43050 -21.53956 -20.52838 -19.86868 -18.85861 -18.17999 -17.93556 -17.89522 -17.68822 -17.30734 -16.81635 -15.96315 -15.84260 -15.49525 -15.25013 -15.19521 -14.71994 -14.23157 -14.18181 -14.08878 -13.74616 -13.55082 -12.99977 -12.71985 -12.65728 -12.45026 -12.00904 -11.92080 -11.90697 -11.64989 -11.57793 -10.60299 -10.33330 -10.11547 -9.79897 -8.45154 -6.08309 -0.92786 -0.01350 0.90751 1.03031 1.31234 1.34562 1.44906 1.55851 1.63825 1.76923 2.21099 2.46353 2.77876 2.93559 3.09359 3.26621 3.47748 3.80796 3.82396 3.93457 3.99578 4.11396 4.14974 4.23075 4.67173 4.77444 4.94480 4.98625 5.08566 5.15861 5.37795 5.47969 5.86236 6.41047 6.42545 6.53676 6.78155 7.26539 7.78267 8.71355 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.046749 B = 0.002798 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.805669 B =10004.314091 C =10587.970188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.230 1.230 7 C -0.332 4.332 8 H 0.061 0.939 9 N -0.576 5.576 10 C 0.449 3.551 11 O -0.606 6.606 12 C 0.068 3.932 13 O -0.334 6.334 14 C 0.517 3.483 15 O -0.519 6.519 16 C -0.112 4.112 17 C -0.061 4.061 18 C -0.076 4.076 19 C 0.045 3.955 20 N -0.525 5.525 21 C 0.272 3.728 22 O -0.213 6.213 23 C -0.021 4.021 24 C -0.013 4.013 25 H 0.282 0.718 26 H 0.393 0.607 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.316 0.684 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.902 -10.842 -0.009 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.781 3.219 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.153 1.153 7 C -0.461 4.461 8 H 0.080 0.920 9 N -0.218 5.218 10 C 0.236 3.764 11 O -0.491 6.491 12 C -0.009 4.009 13 O -0.249 6.249 14 C 0.363 3.637 15 O -0.410 6.410 16 C -0.113 4.113 17 C -0.081 4.081 18 C -0.095 4.095 19 C -0.067 4.067 20 N -0.253 5.253 21 C 0.044 3.956 22 O -0.104 6.104 23 C -0.071 4.071 24 C -0.031 4.031 25 H 0.092 0.908 26 H 0.229 0.771 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.330 0.670 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 25.259 -11.739 -0.005 27.854 hybrid contribution -0.045 1.656 0.001 1.656 sum 25.214 -10.084 -0.004 27.156 Atomic orbital electron populations 1.69780 1.08095 1.29543 1.49141 1.26091 0.96456 1.02665 0.95621 0.85421 0.79619 0.76760 0.80145 1.17962 1.19814 1.15338 1.18999 0.80738 0.95325 1.51030 0.92049 1.41803 1.06099 1.07037 1.66866 1.20139 0.89251 0.84056 0.82931 1.90584 1.70909 1.32528 1.55056 1.22685 0.90686 0.80845 1.06706 1.86582 1.23397 1.31428 1.83527 1.21065 0.80316 0.89904 0.72435 1.90828 1.60549 1.42698 1.46942 1.18644 0.92741 0.90127 1.09815 1.21205 1.01417 0.90572 0.94880 1.20208 0.91320 0.98177 0.99778 1.20388 0.96038 0.88595 1.01635 1.70694 1.02736 1.29528 1.22391 1.29797 0.97572 0.79128 0.89150 1.84585 1.27583 1.24316 1.73952 1.19925 0.83009 0.95809 1.08388 1.19811 0.93168 0.94127 0.96028 0.90847 0.77050 0.86216 0.86118 0.82767 0.82131 0.66985 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 13.96 21.66 0.30 -54.13 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 3 Si 0.96 37.50 27.74 68.60 1.90 39.40 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.23 -7.52 6.52 99.48 0.65 -6.88 16 7 C -0.33 -18.98 10.16 84.04 0.85 -18.13 16 8 H 0.06 4.17 7.39 -2.91 -0.02 4.15 16 9 N -0.58 -26.55 5.09 -306.98 -1.56 -28.11 16 10 C 0.45 20.22 7.86 87.66 0.69 20.91 16 11 O -0.61 -33.53 16.08 15.73 0.25 -33.28 16 12 C 0.07 2.19 5.95 71.24 0.42 2.62 16 13 O -0.33 -11.16 8.98 -50.17 -0.45 -11.61 16 14 C 0.52 14.90 7.89 70.26 0.55 15.45 16 15 O -0.52 -15.82 16.12 19.83 0.32 -15.50 16 16 C -0.11 -2.72 5.88 -20.07 -0.12 -2.84 16 17 C -0.06 -1.39 9.53 22.27 0.21 -1.18 16 18 C -0.08 -1.56 10.03 22.20 0.22 -1.34 16 19 C 0.05 0.95 7.24 39.48 0.29 1.24 16 20 N -0.52 -9.43 11.33 -308.18 -3.49 -12.92 16 21 C 0.27 2.62 13.12 130.51 1.71 4.33 16 22 O -0.21 -3.24 10.77 -9.65 -0.10 -3.34 16 23 C -0.02 -0.42 7.42 22.84 0.17 -0.26 16 24 C -0.01 -0.27 9.60 22.58 0.22 -0.05 16 25 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 26 H 0.39 14.79 5.76 -92.71 -0.53 14.26 16 27 H 0.12 3.23 8.14 -2.39 -0.02 3.22 16 28 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.15 3.66 7.58 -2.91 -0.02 3.64 16 30 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.32 -1.35 8.06 -2.91 -0.02 -1.38 16 32 H 0.16 3.03 7.63 -2.91 -0.02 3.01 16 Total: -1.00 -80.61 300.04 3.47 -77.14 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.61 Total: 21.58 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 5.69 Total: 20.78 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -4.75 Total: -95.16 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: 0.02 Total: -63.74 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 1.90 Total: 39.40 kcal Total: -80.61 3.47 -77.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.820 kcal (2) G-P(sol) polarization free energy of solvation -80.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds