Wall clock time and date at job start Tue Mar 31 2020 03:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48506 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47127 * 299.99422 * 3 2 1 6 6 H 1.48502 * 109.47313 * 59.99477 * 3 2 1 7 7 C 1.39046 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00006 * 267.28653 * 7 2 1 9 9 N 1.36865 * 119.99808 * 87.27819 * 7 2 1 10 10 C 1.46502 * 119.99795 * 149.85995 * 9 7 2 11 11 C 1.50696 * 109.47007 * 278.31369 * 10 9 7 12 12 O 1.20831 * 120.00022 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.34780 * 119.99829 * 329.85408 * 9 7 2 15 15 O 1.21602 * 120.00019 * 9.03939 * 14 9 7 16 16 C 1.47597 * 119.99622 * 189.02738 * 14 9 7 17 17 C 1.40309 * 119.89132 * 325.58628 * 16 14 9 18 18 C 1.36135 * 120.55249 * 179.97438 * 17 16 14 19 19 C 1.39929 * 119.98652 * 0.02562 * 18 17 16 20 20 N 1.34743 * 134.58665 * 179.97438 * 19 18 17 21 21 N 1.28641 * 109.29971 * 180.02562 * 20 19 18 22 22 N 1.28808 * 111.79512 * 0.02562 * 21 20 19 23 23 H 0.97007 * 125.94604 * 179.97438 * 22 21 20 24 24 C 1.37380 * 108.11233 * 359.76739 * 22 21 20 25 25 C 1.38597 * 134.88574 * 179.53247 * 24 22 21 26 26 H 0.97000 * 119.99900 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47277 * 38.31628 * 10 9 7 28 28 H 1.09001 * 109.46506 * 158.31362 * 10 9 7 29 29 H 0.96700 * 117.00199 * 180.02562 * 13 11 10 30 30 H 1.08002 * 119.72785 * 359.97438 * 17 16 14 31 31 H 1.08008 * 120.00866 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.24579 * 0.71445 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8888 2.3966 1.2124 7 6 2.0090 -1.2041 0.0005 8 1 2.3174 -1.6492 0.9351 9 7 2.3024 -1.8254 -1.1832 10 6 3.5083 -2.6493 -1.2987 11 6 4.6999 -1.7627 -1.5533 12 8 4.5567 -0.5653 -1.6299 13 8 5.9204 -2.3030 -1.6950 14 6 1.4819 -1.6793 -2.2424 15 8 0.5749 -0.8703 -2.2019 16 6 1.6846 -2.5009 -3.4517 17 6 2.9834 -2.8567 -3.8457 18 6 3.1858 -3.6145 -4.9584 19 6 2.0934 -4.0447 -5.7198 20 7 1.9521 -4.7817 -6.8389 21 7 0.7023 -4.8833 -7.1260 22 7 -0.0363 -4.2607 -6.2740 23 1 -1.0045 -4.2038 -6.2939 24 6 0.7853 -3.6952 -5.3293 25 6 0.5863 -2.9187 -4.1986 26 1 -0.4850 0.8401 -0.0004 27 1 3.6594 -3.2041 -0.3727 28 1 3.3923 -3.3488 -2.1266 29 1 6.6541 -1.6942 -1.8565 30 1 3.8296 -2.5267 -3.2614 31 1 4.1893 -3.8837 -5.2534 32 1 -0.4136 -2.6451 -3.8957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:45 Heat of formation + Delta-G solvation = 53.433735 kcal Electronic energy + Delta-G solvation = -23135.979976 eV Core-core repulsion = 19487.653206 eV Total energy + Delta-G solvation = -3648.326770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.96788 -40.20941 -38.74283 -36.85561 -35.64436 -34.36093 -33.60382 -32.86232 -30.51900 -30.05774 -28.01028 -25.59725 -23.74132 -23.01708 -22.24871 -21.52796 -19.85823 -18.50887 -18.17436 -17.67559 -16.70568 -16.29738 -16.04022 -15.75851 -15.19140 -14.96927 -14.56702 -14.01340 -13.85826 -13.63417 -13.39429 -12.57690 -12.44969 -12.27523 -11.96649 -11.80776 -11.73001 -11.21088 -11.14214 -10.99447 -10.79434 -10.68303 -10.54398 -10.23220 -9.86079 -9.07459 -8.70089 -8.22185 -8.15940 -7.65674 -7.10342 -3.57903 0.65193 1.38743 2.41046 2.64714 2.69228 3.15915 3.24666 3.47053 3.58976 3.73205 4.02563 4.19592 4.36600 4.58598 4.75966 4.82631 5.10316 5.15507 5.33214 5.41119 5.48815 5.64453 5.82827 5.85906 6.04848 6.27842 6.37029 6.61919 6.78647 6.89526 6.96233 7.15004 7.83035 8.37101 8.41561 8.57811 8.98998 9.24413 9.96210 9.98744 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.006174 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.164069 B = 4534.340541 C = 5581.400358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.645 5.645 2 C 0.203 3.797 3 Si 0.795 3.205 4 H -0.247 1.247 5 H -0.278 1.278 6 H -0.286 1.286 7 C -0.481 4.481 8 H 0.104 0.896 9 N -0.386 5.386 10 C 0.086 3.914 11 C 0.444 3.556 12 O -0.480 6.480 13 O -0.529 6.529 14 C 0.447 3.553 15 O -0.540 6.540 16 C -0.053 4.053 17 C -0.127 4.127 18 C -0.051 4.051 19 C -0.004 4.004 20 N -0.252 5.252 21 N -0.033 5.033 22 N -0.424 5.424 23 H 0.450 0.550 24 C 0.037 3.963 25 C -0.080 4.080 26 H 0.278 0.722 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.400 0.600 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 -7.040 -5.080 9.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.260 5.260 2 C -0.035 4.035 3 Si 0.613 3.387 4 H -0.170 1.170 5 H -0.203 1.203 6 H -0.213 1.213 7 C -0.596 4.596 8 H 0.121 0.879 9 N -0.104 5.104 10 C -0.040 4.040 11 C 0.283 3.717 12 O -0.364 6.364 13 O -0.341 6.341 14 C 0.241 3.759 15 O -0.424 6.424 16 C -0.061 4.061 17 C -0.148 4.148 18 C -0.074 4.074 19 C -0.129 4.129 20 N -0.129 5.129 21 N -0.015 5.015 22 N -0.152 5.152 23 H 0.296 0.704 24 C -0.082 4.082 25 C -0.103 4.103 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.144 0.856 29 H 0.258 0.742 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.100 -7.451 -6.279 10.225 hybrid contribution 0.389 2.104 0.765 2.272 sum 3.489 -5.347 -5.514 8.436 Atomic orbital electron populations 1.70786 1.10747 1.30696 1.13791 1.25080 0.92159 0.99260 0.86968 0.88197 0.86841 0.86085 0.77577 1.17003 1.20312 1.21263 1.18090 1.49610 1.07907 0.84025 0.87888 1.42919 1.13976 1.42247 1.11253 1.21964 0.82647 0.93557 1.05836 1.24738 0.84040 0.89499 0.73403 1.90778 1.85274 1.16616 1.43712 1.84588 1.18642 1.46189 1.84669 1.17637 0.85301 0.89063 0.83887 1.90728 1.34461 1.37174 1.80085 1.20337 0.92185 0.97443 0.96173 1.21455 0.97249 0.99196 0.96935 1.19856 0.97018 0.97418 0.93075 1.19888 0.93540 1.03078 0.96408 1.75210 1.07456 1.17070 1.13166 1.77852 0.97766 1.12500 1.13346 1.44737 1.10915 1.40181 1.19323 0.70369 1.19706 0.90795 1.02266 0.95434 1.19863 1.00288 0.98045 0.92145 0.91000 0.87351 0.85556 0.74199 0.84291 0.84442 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 -17.19 12.16 55.50 0.67 -16.51 16 2 C 0.20 5.37 3.59 -17.45 -0.06 5.31 16 3 Si 0.79 19.80 29.42 -169.99 -5.00 14.79 16 4 H -0.25 -6.36 6.82 56.52 0.39 -5.97 16 5 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.48 -12.33 9.01 -15.01 -0.14 -12.47 16 8 H 0.10 2.58 8.06 -52.48 -0.42 2.16 16 9 N -0.39 -8.90 2.20 -117.26 -0.26 -9.15 16 10 C 0.09 1.50 5.47 -5.19 -0.03 1.47 16 11 C 0.44 7.72 6.42 36.00 0.23 7.96 16 12 O -0.48 -10.54 16.43 -18.75 -0.31 -10.85 16 13 O -0.53 -6.71 13.42 -39.25 -0.53 -7.24 16 14 C 0.45 10.68 7.26 -12.44 -0.09 10.59 16 15 O -0.54 -14.98 13.55 5.28 0.07 -14.91 16 16 C -0.05 -1.03 5.52 -104.93 -0.58 -1.61 16 17 C -0.13 -2.07 7.34 -39.56 -0.29 -2.36 16 18 C -0.05 -0.76 10.03 -39.70 -0.40 -1.16 16 19 C 0.00 -0.07 7.36 -84.94 -0.63 -0.69 16 20 N -0.25 -4.18 12.42 32.10 0.40 -3.78 16 21 N -0.03 -0.50 13.28 60.35 0.80 0.30 16 22 N -0.42 -5.55 7.08 32.31 0.23 -5.32 16 23 H 0.45 3.99 8.96 -190.23 -1.71 2.29 16 24 C 0.04 0.59 7.40 -84.23 -0.62 -0.03 16 25 C -0.08 -1.39 9.62 -39.08 -0.38 -1.77 16 26 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.11 1.66 8.10 -51.93 -0.42 1.24 16 28 H 0.13 1.90 4.08 -51.93 -0.21 1.69 16 29 H 0.40 3.48 9.10 45.56 0.41 3.89 16 30 H 0.14 2.17 3.50 -52.49 -0.18 1.99 16 31 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.14 2.38 7.98 -52.49 -0.42 1.96 16 LS Contribution 286.18 15.07 4.31 4.31 Total: -1.00 -34.34 286.18 -5.11 -39.44 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -2.52 Total: 3.68 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -2.98 Total: 5.23 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 1.85 Total: -34.47 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.76 Total: -32.99 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.00 Total: 14.79 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.34 -5.11 -39.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.877 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds