Wall clock time and date at job start Tue Mar 31 2020 03:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48506 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47127 * 299.99422 * 3 2 1 6 6 H 1.48502 * 109.47313 * 59.99477 * 3 2 1 7 7 C 1.39046 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00006 * 267.28653 * 7 2 1 9 9 N 1.36865 * 119.99808 * 87.27819 * 7 2 1 10 10 C 1.46502 * 119.99795 * 149.85995 * 9 7 2 11 11 C 1.50696 * 109.47007 * 278.31369 * 10 9 7 12 12 O 1.20831 * 120.00022 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.34780 * 119.99829 * 329.85408 * 9 7 2 15 15 O 1.21602 * 120.00019 * 9.03939 * 14 9 7 16 16 C 1.47597 * 119.99622 * 189.02738 * 14 9 7 17 17 C 1.40309 * 119.89132 * 325.58628 * 16 14 9 18 18 C 1.36135 * 120.55249 * 179.97438 * 17 16 14 19 19 C 1.39929 * 119.98652 * 0.02562 * 18 17 16 20 20 N 1.34743 * 134.58665 * 179.97438 * 19 18 17 21 21 N 1.28641 * 109.29971 * 180.02562 * 20 19 18 22 22 N 1.28808 * 111.79512 * 0.02562 * 21 20 19 23 23 H 0.97007 * 125.94604 * 179.97438 * 22 21 20 24 24 C 1.37380 * 108.11233 * 359.76739 * 22 21 20 25 25 C 1.38597 * 134.88574 * 179.53247 * 24 22 21 26 26 H 0.97000 * 119.99900 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47277 * 38.31628 * 10 9 7 28 28 H 1.09001 * 109.46506 * 158.31362 * 10 9 7 29 29 H 0.96700 * 117.00199 * 180.02562 * 13 11 10 30 30 H 1.08002 * 119.72785 * 359.97438 * 17 16 14 31 31 H 1.08008 * 120.00866 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.24579 * 0.71445 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8888 2.3966 1.2124 7 6 2.0090 -1.2041 0.0005 8 1 2.3174 -1.6492 0.9351 9 7 2.3024 -1.8254 -1.1832 10 6 3.5083 -2.6493 -1.2987 11 6 4.6999 -1.7627 -1.5533 12 8 4.5567 -0.5653 -1.6299 13 8 5.9204 -2.3030 -1.6950 14 6 1.4819 -1.6793 -2.2424 15 8 0.5749 -0.8703 -2.2019 16 6 1.6846 -2.5009 -3.4517 17 6 2.9834 -2.8567 -3.8457 18 6 3.1858 -3.6145 -4.9584 19 6 2.0934 -4.0447 -5.7198 20 7 1.9521 -4.7817 -6.8389 21 7 0.7023 -4.8833 -7.1260 22 7 -0.0363 -4.2607 -6.2740 23 1 -1.0045 -4.2038 -6.2939 24 6 0.7853 -3.6952 -5.3293 25 6 0.5863 -2.9187 -4.1986 26 1 -0.4850 0.8401 -0.0004 27 1 3.6594 -3.2041 -0.3727 28 1 3.3923 -3.3488 -2.1266 29 1 6.6541 -1.6942 -1.8565 30 1 3.8296 -2.5267 -3.2614 31 1 4.1893 -3.8837 -5.2534 32 1 -0.4136 -2.6451 -3.8957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:44 Heat of formation + Delta-G solvation = 26.776377 kcal Electronic energy + Delta-G solvation = -23137.135926 eV Core-core repulsion = 19487.653206 eV Total energy + Delta-G solvation = -3649.482720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.23672 -41.65528 -40.23550 -38.33530 -36.96486 -36.08110 -34.88914 -34.71503 -31.88962 -31.43890 -29.51719 -27.24565 -25.23946 -24.35107 -23.53896 -22.90096 -21.45846 -19.97762 -19.44346 -18.99695 -18.36697 -17.69588 -17.30770 -17.20001 -16.79518 -16.38599 -16.34340 -15.64984 -15.26782 -15.07657 -14.98023 -14.19532 -13.98314 -13.83582 -13.37784 -13.26898 -13.07141 -13.02355 -12.69204 -12.46493 -12.27422 -12.16276 -12.02567 -11.83807 -11.49984 -10.98010 -10.10427 -9.91820 -9.60121 -9.42931 -9.07516 -5.50294 -0.64471 0.08228 1.09979 1.20290 1.32463 1.45176 1.51391 1.61664 1.86577 2.20229 2.34651 2.54626 2.76629 2.99977 3.13494 3.55341 3.70963 3.85403 4.01298 4.11752 4.18115 4.29989 4.54159 4.59970 4.83709 4.92928 5.06325 5.24941 5.26932 5.49110 5.76355 5.88829 6.02705 6.75463 7.14030 7.16111 7.21319 7.44532 8.04477 8.21280 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.006174 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.164069 B = 4534.340541 C = 5581.400358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.668 5.668 2 C 0.196 3.804 3 Si 0.816 3.184 4 H -0.260 1.260 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.524 4.524 8 H 0.099 0.901 9 N -0.399 5.399 10 C 0.081 3.919 11 C 0.458 3.542 12 O -0.531 6.531 13 O -0.505 6.505 14 C 0.441 3.559 15 O -0.591 6.591 16 C -0.073 4.073 17 C -0.124 4.124 18 C -0.034 4.034 19 C -0.004 4.004 20 N -0.269 5.269 21 N -0.022 5.022 22 N -0.397 5.397 23 H 0.469 0.531 24 C 0.031 3.969 25 C -0.067 4.067 26 H 0.282 0.718 27 H 0.130 0.870 28 H 0.155 0.845 29 H 0.423 0.577 30 H 0.148 0.852 31 H 0.176 0.824 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 -9.293 -7.059 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.285 5.285 2 C -0.040 4.040 3 Si 0.636 3.364 4 H -0.184 1.184 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.638 4.638 8 H 0.116 0.884 9 N -0.116 5.116 10 C -0.044 4.044 11 C 0.299 3.701 12 O -0.420 6.420 13 O -0.318 6.318 14 C 0.235 3.765 15 O -0.478 6.478 16 C -0.081 4.081 17 C -0.145 4.145 18 C -0.055 4.055 19 C -0.129 4.129 20 N -0.146 5.146 21 N -0.004 5.004 22 N -0.128 5.128 23 H 0.319 0.681 24 C -0.089 4.089 25 C -0.090 4.090 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.172 0.828 29 H 0.285 0.715 30 H 0.165 0.835 31 H 0.193 0.807 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.425 -9.742 -8.226 13.496 hybrid contribution -0.007 2.555 1.023 2.752 sum 4.418 -7.187 -7.203 11.093 Atomic orbital electron populations 1.70845 1.11405 1.31168 1.15050 1.25372 0.92216 1.00369 0.86048 0.87870 0.85943 0.85767 0.76868 1.18449 1.23020 1.19575 1.18003 1.51974 1.08767 0.85032 0.88351 1.42892 1.15885 1.42624 1.10181 1.22157 0.81040 0.92986 1.08175 1.24421 0.85178 0.88367 0.72109 1.90783 1.86198 1.18685 1.46290 1.84500 1.17764 1.45959 1.83603 1.18357 0.84493 0.88500 0.85133 1.90680 1.36227 1.39286 1.81573 1.20059 0.94271 0.98248 0.95504 1.21395 0.95969 0.99441 0.97688 1.20162 0.98418 0.95512 0.91439 1.20258 0.94098 1.02332 0.96233 1.75266 1.07902 1.17915 1.13483 1.77834 0.97745 1.11733 1.13100 1.44806 1.11868 1.38335 1.17833 0.68052 1.19566 0.91413 1.02521 0.95442 1.19821 0.99851 0.97300 0.92048 0.90618 0.85217 0.82813 0.71542 0.83488 0.80707 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -37.01 12.16 21.68 0.26 -36.74 16 2 C 0.20 10.74 3.59 84.96 0.31 11.04 16 3 Si 0.82 41.87 29.42 68.60 2.02 43.89 16 4 H -0.26 -13.82 6.82 99.48 0.68 -13.14 16 5 H -0.30 -16.61 7.11 99.48 0.71 -15.91 16 6 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.52 -27.63 9.01 84.10 0.76 -26.87 16 8 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 9 N -0.40 -18.50 2.20 -643.15 -1.42 -19.92 16 10 C 0.08 2.71 5.47 85.63 0.47 3.17 16 11 C 0.46 15.13 6.42 71.23 0.46 15.59 16 12 O -0.53 -23.22 16.43 21.95 0.36 -22.86 16 13 O -0.50 -11.07 13.42 -51.39 -0.69 -11.76 16 14 C 0.44 21.31 7.26 86.71 0.63 21.94 16 15 O -0.59 -33.78 13.55 -4.04 -0.05 -33.84 16 16 C -0.07 -2.73 5.52 -20.06 -0.11 -2.84 16 17 C -0.12 -3.67 7.34 22.28 0.16 -3.51 16 18 C -0.03 -0.85 10.03 22.19 0.22 -0.62 16 19 C 0.00 -0.11 7.36 39.76 0.29 0.18 16 20 N -0.27 -7.88 12.42 -52.37 -0.65 -8.53 16 21 N -0.02 -0.58 13.28 37.02 0.49 -0.09 16 22 N -0.40 -9.00 7.08 -51.69 -0.37 -9.37 16 23 H 0.47 6.70 8.96 -219.81 -1.97 4.73 16 24 C 0.03 0.88 7.40 39.02 0.29 1.17 16 25 C -0.07 -2.22 9.62 22.60 0.22 -2.00 16 26 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.13 3.74 8.10 -2.39 -0.02 3.72 16 28 H 0.16 4.21 4.08 -2.39 -0.01 4.20 16 29 H 0.42 5.85 9.10 -74.06 -0.67 5.17 16 30 H 0.15 4.15 3.50 -2.91 -0.01 4.14 16 31 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.14 4.56 7.98 -2.91 -0.02 4.54 16 Total: -1.00 -77.02 286.18 2.22 -74.80 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -1.43 Total: 7.17 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 3.69 Total: 17.26 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -1.68 Total: -74.65 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -0.38 Total: -68.46 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.02 Total: 43.89 kcal Total: -77.02 2.22 -74.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.576 kcal (2) G-P(sol) polarization free energy of solvation -77.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds