Wall clock time and date at job start Tue Mar 31 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46509 * 109.47002 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99926 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00073 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99868 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.38440 * 30.20901 * 16 14 13 18 18 C 1.52637 * 109.38734 * 149.99848 * 16 14 13 19 19 S 1.81168 * 109.99498 * 187.01075 * 18 16 14 20 20 C 1.81173 * 103.31380 * 297.38227 * 19 18 16 21 21 C 1.52642 * 109.98948 * 62.61729 * 20 19 18 22 22 S 1.81173 * 109.38408 * 270.52818 * 16 14 13 23 23 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 25 25 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 26 26 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 27 27 H 0.97003 * 119.99875 * 359.97438 * 13 12 10 28 28 H 1.09008 * 109.38148 * 307.17199 * 18 16 14 29 29 H 1.08996 * 109.38400 * 66.84443 * 18 16 14 30 30 H 1.09001 * 109.38728 * 182.77377 * 20 19 18 31 31 H 1.08999 * 109.38825 * 302.56200 * 20 19 18 32 32 H 1.08988 * 109.38570 * 53.31003 * 21 20 19 33 33 H 1.09001 * 109.38214 * 173.09889 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1957 -5.9765 0.0183 14 6 1.7464 -7.2471 0.0239 15 8 0.5540 -7.4687 0.0249 16 6 2.7256 -8.3926 0.0289 17 1 3.6362 -8.0879 0.5449 18 6 2.1071 -9.5848 0.7541 19 16 3.3401 -10.8975 0.9514 20 6 3.7427 -11.3517 -0.7556 21 6 4.3613 -10.1595 -1.4808 22 16 3.1283 -8.8468 -1.6781 23 1 -0.4850 0.8400 -0.0004 24 1 0.3533 -2.3906 0.0005 25 1 0.6167 -4.9162 0.9030 26 1 0.6174 -4.9252 -0.8769 27 1 3.1494 -5.7993 0.0172 28 1 1.7554 -9.2681 1.7361 29 1 1.2651 -9.9634 0.1748 30 1 4.4510 -12.1802 -0.7520 31 1 2.8330 -11.6558 -1.2733 32 1 5.2033 -9.7809 -0.9015 33 1 4.7113 -10.4757 -2.4635 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:53 Heat of formation + Delta-G solvation = -98.716242 kcal Electronic energy + Delta-G solvation = -18186.866770 eV Core-core repulsion = 15077.846353 eV Total energy + Delta-G solvation = -3109.020417 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19583 -39.98761 -36.30831 -35.41208 -34.95269 -33.57230 -33.35992 -29.60884 -26.84737 -25.34805 -24.78735 -21.73333 -21.41704 -20.11583 -19.36238 -18.12776 -17.55896 -17.29565 -16.96882 -16.82333 -16.35168 -16.04619 -15.76701 -15.42161 -15.24095 -14.97856 -14.47554 -14.28976 -14.08605 -13.99261 -13.54924 -13.51840 -12.92019 -12.88906 -12.47952 -12.33717 -12.14005 -11.57211 -11.39013 -11.24559 -10.75181 -10.58519 -10.32682 -10.10545 -9.13503 -8.83332 -8.51992 -6.02418 0.00699 0.47698 1.13536 1.36621 1.37480 1.42759 1.53477 1.66806 1.89507 1.93249 2.29988 3.07328 3.15081 3.17563 3.51443 3.60998 3.78749 4.03051 4.17443 4.19705 4.33626 4.37886 4.38208 4.58863 4.61542 4.75145 5.11492 5.37238 5.89941 6.29339 6.46796 6.92187 7.02280 7.42180 7.92406 8.64642 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.041199 B = 0.002960 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.472989 B = 9456.148450 C = 9681.253480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.121 3.879 13 N -0.696 5.696 14 C 0.538 3.462 15 O -0.559 6.559 16 C -0.074 4.074 17 H 0.133 0.867 18 C -0.066 4.066 19 S -0.254 6.254 20 C -0.085 4.085 21 C -0.081 4.081 22 S -0.245 6.245 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.415 0.585 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.147 0.853 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.282 -20.916 -1.184 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.007 4.007 13 N -0.350 5.350 14 C 0.321 3.679 15 O -0.438 6.438 16 C -0.208 4.208 17 H 0.151 0.849 18 C -0.217 4.217 19 S -0.025 6.025 20 C -0.235 4.235 21 C -0.230 4.230 22 S -0.018 6.018 23 H 0.090 0.910 24 H 0.233 0.767 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.254 0.746 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.165 0.835 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.093 -20.913 -1.178 21.814 hybrid contribution -0.005 1.191 0.038 1.191 sum 6.088 -19.722 -1.141 20.672 Atomic orbital electron populations 1.69673 1.07021 1.29747 1.49143 1.26127 0.96525 1.02685 0.95696 0.84934 0.77740 0.76227 0.79144 1.19475 1.19635 1.19424 1.19715 0.93006 0.83531 1.50548 0.89508 1.41830 1.09595 1.04584 1.63314 1.20360 0.88123 0.85860 0.83737 1.90481 1.15106 1.87479 1.58025 1.20838 0.91575 0.83747 1.04524 1.45656 1.11685 1.04283 1.73328 1.19861 0.88766 0.83223 0.76019 1.90704 1.17269 1.84897 1.50964 1.23336 1.02277 0.96297 0.98844 0.84931 1.23282 0.99343 0.93776 1.05279 1.86915 1.54188 1.47030 1.14384 1.23683 1.05969 1.00909 0.92953 1.23770 0.98148 0.93756 1.07363 1.87419 1.56060 1.50605 1.07721 0.91027 0.76680 0.88209 0.88717 0.74602 0.86403 0.88273 0.83508 0.88081 0.87346 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.43 13.05 21.66 0.28 -48.14 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 3 Si 1.00 41.46 29.55 68.60 2.03 43.49 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.34 -18.54 9.68 84.04 0.81 -17.72 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.76 5.29 -306.98 -1.62 -29.38 16 10 C 0.43 19.70 7.85 87.66 0.69 20.38 16 11 O -0.62 -31.82 15.24 -3.07 -0.05 -31.86 16 12 C 0.12 4.32 6.15 85.63 0.53 4.85 16 13 N -0.70 -22.40 5.53 -466.78 -2.58 -24.98 16 14 C 0.54 16.16 6.87 87.66 0.60 16.76 16 15 O -0.56 -19.86 16.30 -3.04 -0.05 -19.91 16 16 C -0.07 -1.67 2.74 29.73 0.08 -1.59 16 17 H 0.13 2.63 8.14 -2.40 -0.02 2.62 16 18 C -0.07 -1.36 5.02 71.86 0.36 -1.00 16 19 S -0.25 -4.25 22.05 -56.49 -1.25 -5.49 16 20 C -0.09 -0.91 6.25 71.86 0.45 -0.47 16 21 C -0.08 -0.94 6.25 71.86 0.45 -0.49 16 22 S -0.24 -5.21 21.39 -56.49 -1.21 -6.42 16 23 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 24 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 25 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 26 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 27 H 0.42 13.31 7.44 -92.71 -0.69 12.62 16 28 H 0.12 2.44 8.13 -2.39 -0.02 2.42 16 29 H 0.10 2.22 8.06 -2.40 -0.02 2.20 16 30 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.17 8.14 -2.40 -0.02 1.15 16 33 H 0.15 1.06 8.14 -2.40 -0.02 1.04 16 Total: -1.00 -65.47 310.03 -0.27 -65.74 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.27 Total: 36.26 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 4.44 Total: 20.70 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -3.92 Total: -102.51 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.10 Total: -51.78 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: -9.45 SS G_CDS: -2.45 Total: -11.91 kcal Total: -65.47 -0.27 -65.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.973 kcal (2) G-P(sol) polarization free energy of solvation -65.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds