Wall clock time and date at job start Tue Mar 31 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86795 * 119.99752 * 2 1 4 4 H 1.48504 * 109.47123 * 270.00018 * 3 2 1 5 5 H 1.48499 * 109.47497 * 30.00374 * 3 2 1 6 6 H 1.48500 * 109.46893 * 150.00227 * 3 2 1 7 7 C 1.39171 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99508 * 165.09437 * 7 2 1 9 9 N 1.36660 * 120.00449 * 345.09780 * 7 2 1 10 10 C 1.46499 * 119.99963 * 341.75842 * 9 7 2 11 11 C 1.50703 * 109.47362 * 96.46986 * 10 9 7 12 12 O 1.20818 * 119.99650 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99923 * 180.02562 * 11 10 9 14 14 C 1.34776 * 120.00061 * 161.75437 * 9 7 2 15 15 O 1.21630 * 120.00304 * 4.82647 * 14 9 7 16 16 C 1.47578 * 120.00153 * 184.81736 * 14 9 7 17 17 N 1.32417 * 120.59064 * 6.62057 * 16 14 9 18 18 C 1.32703 * 121.17104 * 180.02562 * 17 16 14 19 19 C 1.35475 * 122.11904 * 359.97438 * 18 17 16 20 20 N 1.36294 * 120.53758 * 0.02562 * 19 18 17 21 21 C 1.36178 * 133.91391 * 180.32355 * 20 19 18 22 22 C 1.35331 * 107.13852 * 180.02562 * 21 20 19 23 23 N 1.33575 * 108.60511 * 359.63923 * 22 21 20 24 24 C 1.31831 * 109.14359 * 0.22380 * 23 22 21 25 25 H 0.97000 * 120.00129 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46987 * 216.47079 * 10 9 7 27 27 H 1.08999 * 109.47135 * 336.46632 * 10 9 7 28 28 H 0.96699 * 116.99672 * 179.97438 * 13 11 10 29 29 H 1.07996 * 118.94411 * 179.97438 * 18 17 16 30 30 H 1.08001 * 119.73398 * 180.02562 * 19 18 17 31 31 H 1.07998 * 126.43291 * 359.94037 * 21 20 19 32 32 H 1.08002 * 125.70240 * 179.89492 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4943 2.0464 -1.4001 5 1 1.4443 2.6527 0.7001 6 1 3.5444 1.4402 0.7000 7 6 2.0087 -1.2053 -0.0005 8 1 3.0615 -1.2209 -0.2412 9 7 1.3599 -2.3691 0.3033 10 6 0.0746 -2.3294 1.0052 11 6 -1.0478 -2.4229 0.0038 12 8 -0.7994 -2.5139 -1.1751 13 8 -2.3232 -2.4052 0.4217 14 6 1.9024 -3.5532 -0.0429 15 8 3.0090 -3.5913 -0.5464 16 6 1.1540 -4.8038 0.1892 17 7 -0.0996 -4.7699 0.6144 18 6 -0.7831 -5.8873 0.8273 19 6 -0.2423 -7.1125 0.6232 20 7 1.0425 -7.2382 0.1859 21 6 1.8402 -8.3020 -0.1084 22 6 3.0368 -7.8066 -0.5009 23 7 2.9802 -6.4727 -0.4591 24 6 1.7838 -6.1034 -0.0466 25 1 -0.4850 0.8400 0.0004 26 1 0.0134 -3.1680 1.6989 27 1 -0.0087 -1.3938 1.5581 28 1 -3.0086 -2.4673 -0.2576 29 1 -1.8033 -5.8177 1.1745 30 1 -0.8339 -7.9968 0.8085 31 1 1.5693 -9.3452 -0.0398 32 1 3.8931 -8.3918 -0.8021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:31 Heat of formation + Delta-G solvation = 21.218006 kcal Electronic energy + Delta-G solvation = -23549.696236 eV Core-core repulsion = 19899.972486 eV Total energy + Delta-G solvation = -3649.723749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.60686 -39.51335 -38.23239 -37.56591 -35.19041 -34.47882 -33.83830 -31.93604 -30.14810 -29.19184 -27.66680 -25.91493 -24.11466 -22.89392 -21.77271 -21.03459 -19.94006 -18.12916 -17.49746 -17.08057 -16.78525 -15.90894 -15.57370 -15.46591 -15.34691 -14.87910 -14.53976 -14.14569 -13.92837 -13.53387 -13.36874 -13.30336 -12.52828 -12.39154 -11.84262 -11.83230 -11.57453 -11.07937 -11.03238 -10.58971 -10.49267 -10.25071 -9.78412 -9.64367 -9.47173 -9.06704 -8.68562 -8.59135 -8.05239 -7.88780 -6.71571 -4.02012 0.46385 1.51784 2.66318 3.02102 3.10915 3.13922 3.20044 3.41494 3.73209 3.80806 4.15291 4.19110 4.36570 4.46056 4.54169 4.75853 4.88610 5.04299 5.37688 5.41465 5.53624 5.66044 6.01798 6.27306 6.45967 6.63322 6.66362 6.76780 7.04304 7.25191 7.65004 7.75571 7.91232 8.14531 8.22418 8.87594 8.99298 9.26494 9.73597 10.31413 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.006379 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.210471 B = 4388.673272 C = 5430.111825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.028 3.972 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.275 4.275 8 H 0.119 0.881 9 N -0.385 5.385 10 C 0.144 3.856 11 C 0.523 3.477 12 O -0.521 6.521 13 O -0.533 6.533 14 C 0.480 3.520 15 O -0.549 6.549 16 C 0.212 3.788 17 N -0.469 5.469 18 C 0.051 3.949 19 C -0.024 4.024 20 N -0.353 5.353 21 C -0.093 4.093 22 C 0.017 3.983 23 N -0.433 5.433 24 C 0.194 3.806 25 H 0.280 0.720 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.388 0.612 29 H 0.174 0.826 30 H 0.163 0.837 31 H 0.182 0.818 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 -10.273 5.163 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.179 4.179 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.404 4.404 8 H 0.137 0.863 9 N -0.101 5.101 10 C 0.018 3.982 11 C 0.365 3.635 12 O -0.407 6.407 13 O -0.343 6.343 14 C 0.269 3.731 15 O -0.431 6.431 16 C 0.051 3.949 17 N -0.187 5.187 18 C -0.089 4.089 19 C -0.150 4.150 20 N -0.026 5.026 21 C -0.227 4.227 22 C -0.137 4.137 23 N -0.152 5.152 24 C -0.055 4.055 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.140 0.860 28 H 0.243 0.757 29 H 0.191 0.809 30 H 0.181 0.819 31 H 0.200 0.800 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.749 -8.949 4.893 11.250 hybrid contribution -0.919 -0.904 -0.559 1.405 sum -5.668 -9.853 4.335 12.165 Atomic orbital electron populations 1.69737 1.06513 1.29049 1.43874 1.25565 0.95596 1.00767 0.95923 0.85644 0.79378 0.79158 0.79016 1.19825 1.20358 1.18720 1.20116 0.95872 0.82158 1.42271 0.86343 1.43466 1.16348 1.05157 1.45129 1.21017 0.80358 1.04565 0.92253 1.23116 0.81891 0.69019 0.89513 1.90579 1.83962 1.46698 1.19507 1.84500 1.17820 1.87063 1.44938 1.16952 0.88032 0.81558 0.86552 1.90750 1.19514 1.84814 1.47999 1.22785 0.89281 0.90720 0.92090 1.68693 1.06102 1.29441 1.14480 1.22093 1.00858 0.86217 0.99777 1.22331 0.84771 1.01256 1.06597 1.42782 1.10327 1.08763 1.40742 1.22592 0.92959 0.92465 1.14701 1.22789 0.97238 0.90899 1.02778 1.70666 1.15922 1.11489 1.17115 1.22621 0.88999 0.87979 1.05894 0.90949 0.88205 0.86019 0.75686 0.80886 0.81927 0.80042 0.80121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.35 9.03 55.51 0.50 -20.84 16 2 C 0.03 0.69 5.03 -17.44 -0.09 0.61 16 3 Si 0.94 19.41 29.58 -169.99 -5.03 14.38 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.27 -7.39 9.37 -15.05 -0.14 -7.53 16 8 H 0.12 3.28 7.32 -52.48 -0.38 2.89 16 9 N -0.38 -10.03 2.18 -117.28 -0.26 -10.29 16 10 C 0.14 3.27 4.78 -5.19 -0.02 3.24 16 11 C 0.52 11.90 4.50 36.01 0.16 12.06 16 12 O -0.52 -13.97 16.85 -18.74 -0.32 -14.28 16 13 O -0.53 -9.73 13.42 -39.25 -0.53 -10.26 16 14 C 0.48 12.83 7.37 -12.45 -0.09 12.74 16 15 O -0.55 -16.28 15.89 5.25 0.08 -16.20 16 16 C 0.21 4.87 6.75 -80.55 -0.54 4.33 16 17 N -0.47 -9.16 4.92 -8.70 -0.04 -9.21 16 18 C 0.05 0.75 11.01 -18.16 -0.20 0.55 16 19 C -0.02 -0.33 11.00 -16.56 -0.18 -0.51 16 20 N -0.35 -5.84 2.95 -61.10 -0.18 -6.02 16 21 C -0.09 -1.27 11.80 -16.66 -0.20 -1.47 16 22 C 0.02 0.27 11.84 -17.83 -0.21 0.05 16 23 N -0.43 -9.40 10.75 -11.27 -0.12 -9.53 16 24 C 0.19 4.16 7.66 -154.00 -1.18 2.98 16 25 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 26 H 0.10 2.04 5.84 -51.93 -0.30 1.74 16 27 H 0.12 2.78 6.23 -51.93 -0.32 2.46 16 28 H 0.39 5.51 9.10 45.56 0.41 5.92 16 29 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 287.04 15.07 4.33 4.33 Total: -1.00 -36.11 287.04 -5.68 -41.78 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -1.42 Total: 9.09 kcal Atomic # 6 Polarization: 29.75 SS G_CDS: -2.70 Total: 27.05 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.10 Total: -55.89 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.76 Total: -40.74 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -36.11 -5.68 -41.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.003 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds