Wall clock time and date at job start Tue Mar 31 2020 03:18:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34655 * 116.99756 * 2 1
4 4 O 1.21404 * 119.99938 * 359.97438 * 3 2 1
5 5 C 1.48243 * 119.99780 * 179.97438 * 3 2 1
6 6 C 1.42299 * 126.94261 * 179.70936 * 5 3 2
7 7 C 1.35311 * 103.92087 * 179.85234 * 6 5 3
8 8 S 1.76193 * 126.66433 * 180.14568 * 7 6 5
9 9 O 1.42099 * 106.40502 * 203.87046 * 8 7 6
10 10 O 1.42103 * 106.40058 * 336.79487 * 8 7 6
11 11 N 1.65599 * 107.21672 * 90.33086 * 8 7 6
12 12 C 1.46506 * 119.99974 * 65.00554 * 11 8 7
13 13 C 1.50694 * 109.47116 * 165.00072 * 12 11 8
14 14 H 1.07993 * 120.00353 * 359.97438 * 13 12 11
15 15 C 1.37887 * 119.99860 * 180.02562 * 13 12 11
16 16 N 1.31521 * 119.99568 * 359.97438 * 15 13 12
17 17 Si 1.86797 * 120.00155 * 179.97438 * 15 13 12
18 18 H 1.48504 * 109.46880 * 359.97438 * 17 15 13
19 19 H 1.48506 * 109.47079 * 119.99625 * 17 15 13
20 20 H 1.48498 * 109.46717 * 239.99661 * 17 15 13
21 21 O 1.34025 * 106.67479 * 0.40878 * 7 6 5
22 22 N 1.20904 * 111.85367 * 359.71780 * 21 7 6
23 23 H 1.08996 * 109.47465 * 300.00024 * 1 2 3
24 24 H 1.08999 * 109.47008 * 60.00033 * 1 2 3
25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3
26 26 H 1.07999 * 128.03849 * 359.97438 * 6 5 3
27 27 H 0.96999 * 120.00563 * 244.99844 * 11 8 7
28 28 H 1.09010 * 109.46654 * 284.99866 * 12 11 8
29 29 H 1.09002 * 109.47015 * 44.99106 * 12 11 8
30 30 H 0.96998 * 119.99239 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0632 1.1998 0.0000
4 8 1.4020 2.2179 -0.0005
5 6 3.5436 1.2774 0.0006
6 6 4.3382 2.4579 -0.0051
7 6 5.6095 1.9947 0.0016
8 16 7.0819 2.9624 0.0028
9 8 8.1039 2.1387 -0.5415
10 8 6.7310 4.2274 -0.5411
11 7 7.4907 3.2308 1.5849
12 6 7.8751 2.1072 2.4429
13 6 8.5416 2.6315 3.6886
14 1 8.6668 3.6952 3.8272
15 6 8.9926 1.7531 4.6510
16 7 8.8406 0.4577 4.4819
17 14 9.8195 2.4029 6.1948
18 1 9.8681 3.8862 6.1433
19 1 9.0469 1.9736 7.3882
20 1 11.2011 1.8653 6.2799
21 8 5.5313 0.6567 0.0011
22 7 4.3848 0.2729 0.0007
23 1 -0.3634 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 4.0041 3.4849 -0.0111
27 1 7.4757 4.1319 1.9436
28 1 6.9862 1.5394 2.7180
29 1 8.5677 1.4598 1.9051
30 1 9.1576 -0.1602 5.1592
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000859136071.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:15
Heat of formation + Delta-G solvation = -86.665392 kcal
Electronic energy + Delta-G solvation = -20663.754406 eV
Core-core repulsion = 16976.670587 eV
Total energy + Delta-G solvation = -3687.083819 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 290.050 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-45.42800 -40.67515 -37.12408 -36.92343 -35.72258 -34.85508 -34.46836 -32.39067
-32.27668 -28.47850 -26.89752 -25.30184 -23.77110 -22.64862 -22.00549 -20.00960
-18.67050 -18.24700 -17.77082 -17.47337 -16.85692 -16.66710 -16.17099 -15.80729
-15.54414 -14.74034 -14.32277 -13.99217 -13.73627 -13.70521 -12.80866 -12.61743
-12.35769 -12.31068 -12.02754 -11.91498 -11.83540 -11.62719 -11.26016 -11.22938
-11.01944 -10.93497 -10.81851 -10.49077 -10.21049 -9.53200 -9.10529 -8.40432
-6.24696 -4.30784 0.32800 0.54877 0.86841 1.94874 2.46030 2.82760
3.21251 3.26564 3.30163 3.34675 3.53971 3.79977 4.28582 4.29806
4.44610 4.64150 4.73476 4.82624 4.98435 5.12715 5.15566 5.31091
5.78437 6.19192 7.11812 7.13486 7.18824 7.51453 7.57475 7.71833
8.03529 8.73033 9.34969 10.85416
Molecular weight = 290.05amu
Principal moments of inertia in cm(-1)
A = 0.017656 B = 0.004552 C = 0.003965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1585.478753 B = 6149.137887 C = 7059.354560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.341 6.341
3 C 0.558 3.442
4 O -0.484 6.484
5 C -0.038 4.038
6 C -0.064 4.064
7 C -0.574 4.574
8 S 2.710 3.290
9 O -0.927 6.927
10 O -0.950 6.950
11 N -1.084 6.084
12 C 0.239 3.761
13 C -0.533 4.533
14 H 0.069 0.931
15 C 0.063 3.937
16 N -0.887 5.887
17 Si 0.905 3.095
18 H -0.271 1.271
19 H -0.283 1.283
20 H -0.281 1.281
21 O 0.217 5.783
22 N -0.283 5.283
23 H 0.068 0.932
24 H 0.068 0.932
25 H 0.108 0.892
26 H 0.202 0.798
27 H 0.417 0.583
28 H 0.024 0.976
29 H 0.048 0.952
30 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.239 1.343 -8.005 14.686
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.256 6.256
3 C 0.399 3.601
4 O -0.369 6.369
5 C -0.193 4.193
6 C -0.087 4.087
7 C -0.712 4.712
8 S 2.785 3.215
9 O -0.916 6.916
10 O -0.939 6.939
11 N -0.851 5.851
12 C 0.117 3.883
13 C -0.573 4.573
14 H 0.087 0.913
15 C -0.141 4.141
16 N -0.524 5.524
17 Si 0.732 3.268
18 H -0.195 1.195
19 H -0.209 1.209
20 H -0.207 1.207
21 O 0.121 5.879
22 N 0.032 4.968
23 H 0.087 0.913
24 H 0.086 0.914
25 H 0.126 0.874
26 H 0.219 0.781
27 H 0.253 0.747
28 H 0.042 0.958
29 H 0.066 0.934
30 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -12.483 0.117 -8.748 15.244
hybrid contribution -0.648 1.012 1.426 1.864
sum -13.131 1.129 -7.322 15.077
Atomic orbital electron populations
1.23427 0.74838 1.04426 1.03031 1.86616 1.24253 1.31198 1.83550
1.19333 0.85518 0.82211 0.73018 1.90883 1.65062 1.35919 1.45015
1.22504 0.93444 0.90532 1.12785 1.22822 0.89027 1.01431 0.95408
1.38648 1.22469 0.92993 1.17089 1.02276 0.72462 0.72790 0.73933
1.93634 1.51209 1.69754 1.77049 1.93622 1.84251 1.38218 1.77810
1.55513 1.80787 1.18392 1.30359 1.19283 0.96034 0.83013 0.90018
1.21173 1.39688 0.93816 1.02592 0.91298 1.24983 0.95689 0.94772
0.98690 1.69949 1.45814 1.01483 1.35203 0.86333 0.79146 0.79123
0.82170 1.19529 1.20876 1.20694 1.85023 1.21272 1.19394 1.62239
1.74157 0.90478 1.23663 1.08470 0.91285 0.91372 0.87366 0.78065
0.74720 0.95834 0.93445 0.92337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.29 10.56 101.05 1.07 1.36 16
2 O -0.34 -4.29 10.58 -40.37 -0.43 -4.71 16
3 C 0.56 7.90 7.99 34.84 0.28 8.18 16
4 O -0.48 -7.20 16.74 -19.19 -0.32 -7.52 16
5 C -0.04 -0.57 7.24 -82.54 -0.60 -1.17 16
6 C -0.06 -0.91 10.77 -39.07 -0.42 -1.33 16
7 C -0.57 -8.89 7.48 29.69 0.22 -8.67 16
8 S 2.71 43.94 5.90 -107.50 -0.63 43.30 16
9 O -0.93 -17.82 17.49 -57.18 -1.00 -18.82 16
10 O -0.95 -15.50 17.87 -57.17 -1.02 -16.53 16
11 N -1.08 -19.29 5.99 -11.65 -0.07 -19.36 16
12 C 0.24 5.49 5.98 -5.19 -0.03 5.45 16
13 C -0.53 -13.46 9.27 -34.44 -0.32 -13.78 16
14 H 0.07 1.64 7.65 -52.49 -0.40 1.24 16
15 C 0.06 1.64 5.46 -17.81 -0.10 1.55 16
16 N -0.89 -24.52 13.29 55.43 0.74 -23.79 16
17 Si 0.91 20.05 29.54 -169.99 -5.02 15.03 16
18 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16
19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16
21 O 0.22 3.64 11.18 17.22 0.19 3.84 16
22 N -0.28 -4.67 12.12 33.29 0.40 -4.27 16
23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
25 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16
26 H 0.20 2.24 8.06 -52.49 -0.42 1.82 16
27 H 0.42 6.52 8.54 -34.47 -0.29 6.22 16
28 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16
29 H 0.05 1.17 7.75 -51.93 -0.40 0.77 16
30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
LS Contribution 299.61 15.07 4.52 4.52
Total: -1.00 -31.83 299.61 -4.89 -36.72
By element:
Atomic # 1 Polarization: 2.35 SS G_CDS: -2.35 Total: 0.01 kcal
Atomic # 6 Polarization: -8.51 SS G_CDS: 0.10 Total: -8.41 kcal
Atomic # 7 Polarization: -48.49 SS G_CDS: 1.07 Total: -47.42 kcal
Atomic # 8 Polarization: -41.17 SS G_CDS: -2.58 Total: -43.75 kcal
Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal
Atomic # 16 Polarization: 43.94 SS G_CDS: -0.63 Total: 43.30 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -31.83 -4.89 -36.72 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859136071.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.943 kcal
(2) G-P(sol) polarization free energy of solvation -31.831 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.892 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds