Wall clock time and date at job start Tue Mar 31 2020 03:18:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34655 * 116.99756 * 2 1
4 4 O 1.21404 * 119.99938 * 359.97438 * 3 2 1
5 5 C 1.48243 * 119.99780 * 179.97438 * 3 2 1
6 6 C 1.42299 * 126.94261 * 179.70936 * 5 3 2
7 7 C 1.35311 * 103.92087 * 179.85234 * 6 5 3
8 8 S 1.76193 * 126.66433 * 180.14568 * 7 6 5
9 9 O 1.42099 * 106.40502 * 203.87046 * 8 7 6
10 10 O 1.42103 * 106.40058 * 336.79487 * 8 7 6
11 11 N 1.65599 * 107.21672 * 90.33086 * 8 7 6
12 12 C 1.46506 * 119.99974 * 65.00554 * 11 8 7
13 13 C 1.50694 * 109.47116 * 165.00072 * 12 11 8
14 14 H 1.07993 * 120.00353 * 359.97438 * 13 12 11
15 15 C 1.37887 * 119.99860 * 180.02562 * 13 12 11
16 16 N 1.31521 * 119.99568 * 359.97438 * 15 13 12
17 17 Si 1.86797 * 120.00155 * 179.97438 * 15 13 12
18 18 H 1.48504 * 109.46880 * 359.97438 * 17 15 13
19 19 H 1.48506 * 109.47079 * 119.99625 * 17 15 13
20 20 H 1.48498 * 109.46717 * 239.99661 * 17 15 13
21 21 O 1.34025 * 106.67479 * 0.40878 * 7 6 5
22 22 N 1.20904 * 111.85367 * 359.71780 * 21 7 6
23 23 H 1.08996 * 109.47465 * 300.00024 * 1 2 3
24 24 H 1.08999 * 109.47008 * 60.00033 * 1 2 3
25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3
26 26 H 1.07999 * 128.03849 * 359.97438 * 6 5 3
27 27 H 0.96999 * 120.00563 * 244.99844 * 11 8 7
28 28 H 1.09010 * 109.46654 * 284.99866 * 12 11 8
29 29 H 1.09002 * 109.47015 * 44.99106 * 12 11 8
30 30 H 0.96998 * 119.99239 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0632 1.1998 0.0000
4 8 1.4020 2.2179 -0.0005
5 6 3.5436 1.2774 0.0006
6 6 4.3382 2.4579 -0.0051
7 6 5.6095 1.9947 0.0016
8 16 7.0819 2.9624 0.0028
9 8 8.1039 2.1387 -0.5415
10 8 6.7310 4.2274 -0.5411
11 7 7.4907 3.2308 1.5849
12 6 7.8751 2.1072 2.4429
13 6 8.5416 2.6315 3.6886
14 1 8.6668 3.6952 3.8272
15 6 8.9926 1.7531 4.6510
16 7 8.8406 0.4577 4.4819
17 14 9.8195 2.4029 6.1948
18 1 9.8681 3.8862 6.1433
19 1 9.0469 1.9736 7.3882
20 1 11.2011 1.8653 6.2799
21 8 5.5313 0.6567 0.0011
22 7 4.3848 0.2729 0.0007
23 1 -0.3634 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 4.0041 3.4849 -0.0111
27 1 7.4757 4.1319 1.9436
28 1 6.9862 1.5394 2.7180
29 1 8.5677 1.4598 1.9051
30 1 9.1576 -0.1602 5.1592
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000859136071.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:14
Heat of formation + Delta-G solvation = -111.612183 kcal
Electronic energy + Delta-G solvation = -20664.836180 eV
Core-core repulsion = 16976.670587 eV
Total energy + Delta-G solvation = -3688.165593 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 290.050 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-46.65851 -41.69998 -38.52438 -37.94142 -37.15930 -36.55102 -35.67375 -34.15791
-33.60579 -29.27460 -28.76555 -26.35886 -25.00454 -24.50197 -23.17213 -21.19226
-20.08586 -19.51987 -19.04051 -18.82736 -17.92210 -17.80506 -17.60027 -17.33720
-16.93716 -16.44223 -15.43877 -15.31752 -14.95197 -14.60940 -14.58212 -14.11214
-13.74393 -13.64172 -13.35706 -13.30095 -13.19719 -12.96641 -12.77051 -12.51775
-12.32425 -12.14541 -12.09127 -12.06201 -11.72224 -11.38647 -10.88717 -10.21989
-8.22310 -6.34250 -1.01916 -0.70106 -0.28935 0.93299 1.33580 1.47911
1.49777 1.59952 1.62341 1.93093 2.39682 2.44511 2.47078 3.13439
3.15975 3.21739 3.56176 3.71141 4.12929 4.23317 4.24797 4.53112
4.60122 4.84680 5.26442 5.31242 5.76700 5.95069 6.05017 6.28539
6.33548 6.80300 7.35831 8.88873
Molecular weight = 290.05amu
Principal moments of inertia in cm(-1)
A = 0.017656 B = 0.004552 C = 0.003965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1585.478753 B = 6149.137887 C = 7059.354560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.351 6.351
3 C 0.561 3.439
4 O -0.493 6.493
5 C -0.042 4.042
6 C -0.049 4.049
7 C -0.585 4.585
8 S 2.744 3.256
9 O -0.958 6.958
10 O -0.943 6.943
11 N -1.082 6.082
12 C 0.248 3.752
13 C -0.546 4.546
14 H 0.081 0.919
15 C 0.008 3.992
16 N -0.927 5.927
17 Si 0.971 3.029
18 H -0.258 1.258
19 H -0.282 1.282
20 H -0.282 1.282
21 O 0.198 5.802
22 N -0.296 5.296
23 H 0.073 0.927
24 H 0.077 0.923
25 H 0.138 0.862
26 H 0.233 0.767
27 H 0.428 0.572
28 H 0.013 0.987
29 H 0.024 0.976
30 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.286 2.566 -7.774 15.606
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.266 6.266
3 C 0.402 3.598
4 O -0.379 6.379
5 C -0.197 4.197
6 C -0.071 4.071
7 C -0.724 4.724
8 S 2.821 3.179
9 O -0.948 6.948
10 O -0.932 6.932
11 N -0.848 5.848
12 C 0.124 3.876
13 C -0.585 4.585
14 H 0.099 0.901
15 C -0.192 4.192
16 N -0.566 5.566
17 Si 0.796 3.204
18 H -0.181 1.181
19 H -0.207 1.207
20 H -0.208 1.208
21 O 0.104 5.896
22 N 0.017 4.983
23 H 0.092 0.908
24 H 0.095 0.905
25 H 0.156 0.844
26 H 0.250 0.750
27 H 0.266 0.734
28 H 0.031 0.969
29 H 0.042 0.958
30 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -13.507 1.378 -8.522 16.031
hybrid contribution -0.471 0.612 1.269 1.486
sum -13.979 1.991 -7.253 15.874
Atomic orbital electron populations
1.23833 0.72290 1.06691 1.03718 1.86608 1.26748 1.30295 1.82965
1.19193 0.85026 0.82635 0.72928 1.90873 1.65074 1.36273 1.45670
1.22870 0.94285 0.90620 1.11946 1.23266 0.88022 1.02573 0.93216
1.38338 1.22652 0.92845 1.18597 1.01125 0.71837 0.72213 0.72756
1.93597 1.53169 1.70585 1.77458 1.93626 1.84260 1.38021 1.77308
1.55250 1.81403 1.17856 1.30306 1.18866 0.94916 0.83939 0.89888
1.21647 1.39125 0.94547 1.03211 0.90052 1.25876 0.96435 0.94939
1.01949 1.70070 1.47291 1.02798 1.36419 0.85304 0.77763 0.79117
0.78239 1.18128 1.20743 1.20778 1.85009 1.21595 1.19941 1.63083
1.74148 0.90580 1.24415 1.09189 0.90821 0.90477 0.84412 0.74996
0.73446 0.96916 0.95791 0.92322
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 10.56 113.37 1.20 1.57 16
2 O -0.35 -8.32 10.58 -55.63 -0.59 -8.91 16
3 C 0.56 15.10 7.99 70.48 0.56 15.67 16
4 O -0.49 -13.78 16.74 20.15 0.34 -13.45 16
5 C -0.04 -1.22 7.24 42.94 0.31 -0.91 16
6 C -0.05 -1.29 10.77 22.60 0.24 -1.05 16
7 C -0.58 -17.74 7.48 67.14 0.50 -17.24 16
8 S 2.74 87.02 5.90 -56.49 -0.33 86.69 16
9 O -0.96 -37.07 17.49 -128.00 -2.24 -39.31 16
10 O -0.94 -28.95 17.87 -128.00 -2.29 -31.24 16
11 N -1.08 -37.86 5.99 -190.77 -1.14 -39.00 16
12 C 0.25 11.51 5.98 85.63 0.51 12.02 16
13 C -0.55 -27.38 9.27 25.60 0.24 -27.14 16
14 H 0.08 3.77 7.65 -2.91 -0.02 3.75 16
15 C 0.01 0.42 5.46 84.66 0.46 0.88 16
16 N -0.93 -51.96 13.29 21.45 0.28 -51.68 16
17 Si 0.97 40.72 29.54 68.60 2.03 42.74 16
18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16
19 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16
20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16
21 O 0.20 6.69 11.18 71.80 0.80 7.49 16
22 N -0.30 -9.73 12.12 -49.51 -0.60 -10.33 16
23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
25 H 0.14 1.07 8.14 -2.38 -0.02 1.05 16
26 H 0.23 4.47 8.06 -2.91 -0.02 4.44 16
27 H 0.43 12.79 8.54 -96.74 -0.83 11.97 16
28 H 0.01 0.62 8.14 -2.38 -0.02 0.61 16
29 H 0.02 1.23 7.75 -2.39 -0.02 1.21 16
30 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16
Total: -1.00 -67.00 299.61 0.67 -66.33
By element:
Atomic # 1 Polarization: 6.46 SS G_CDS: 0.38 Total: 6.84 kcal
Atomic # 6 Polarization: -20.22 SS G_CDS: 4.03 Total: -16.19 kcal
Atomic # 7 Polarization: -99.55 SS G_CDS: -1.46 Total: -101.01 kcal
Atomic # 8 Polarization: -81.43 SS G_CDS: -3.97 Total: -85.41 kcal
Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal
Atomic # 16 Polarization: 87.02 SS G_CDS: -0.33 Total: 86.69 kcal
Total: -67.00 0.67 -66.33 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859136071.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.280 kcal
(2) G-P(sol) polarization free energy of solvation -67.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.285 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds