Wall clock time and date at job start Tue Mar 31 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99594 * 2 1 4 4 H 1.48499 * 109.46747 * 269.99679 * 3 2 1 5 5 H 1.48498 * 109.47207 * 29.99642 * 3 2 1 6 6 H 1.48502 * 109.46794 * 149.99873 * 3 2 1 7 7 C 1.37865 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47373 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.47078 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54242 * 68.37978 * 11 10 9 13 13 O 1.42100 * 110.54304 * 291.62695 * 11 10 9 14 14 N 1.65596 * 104.44797 * 180.02562 * 11 10 9 15 15 C 1.46505 * 119.99941 * 65.00238 * 14 11 10 16 16 C 1.52997 * 109.47212 * 164.99768 * 15 14 11 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 18 18 C 1.35143 * 127.24759 * 89.70473 * 17 16 15 19 19 C 1.37804 * 114.75762 * 179.86854 * 18 17 16 20 20 N 1.30081 * 116.88611 * 0.44994 * 19 18 17 21 21 S 1.69606 * 107.14812 * 359.75574 * 20 19 18 22 22 H 0.97001 * 120.00561 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46718 * 60.00289 * 9 7 2 24 24 H 1.08996 * 109.47439 * 300.00201 * 9 7 2 25 25 H 1.08999 * 109.46875 * 60.00442 * 10 9 7 26 26 H 1.08991 * 109.47592 * 300.00265 * 10 9 7 27 27 H 0.96997 * 120.00145 * 244.99357 * 14 11 10 28 28 H 1.09002 * 109.47068 * 284.99828 * 15 14 11 29 29 H 1.09001 * 109.47372 * 44.99916 * 15 14 11 30 30 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 31 31 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 32 32 H 1.08004 * 122.62036 * 0.04476 * 18 17 16 33 33 H 1.08003 * 121.55648 * 180.21155 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 16 1.3384 -5.2330 0.0021 12 8 0.6640 -5.4199 -1.2346 13 8 0.6650 -5.4195 1.2394 14 7 2.5207 -6.3926 0.0025 15 6 3.4191 -6.5223 1.1524 16 6 4.1502 -7.8643 1.0796 17 6 5.0748 -7.9975 2.2621 18 6 4.7849 -8.5260 3.4717 19 6 5.8306 -8.5212 4.3692 20 7 6.9544 -8.0094 3.9602 21 16 6.7196 -7.5020 2.3590 22 1 -0.4851 0.8400 -0.0004 23 1 0.6242 -2.5574 -0.8881 24 1 0.6248 -2.5563 0.8919 25 1 2.8727 -3.6038 0.8910 26 1 2.8714 -3.6046 -0.8889 27 1 2.6182 -6.9860 -0.7586 28 1 4.1468 -5.7109 1.1383 29 1 2.8390 -6.4741 2.0740 30 1 3.4225 -8.6757 1.0937 31 1 4.7302 -7.9126 0.1581 32 1 3.8107 -8.9238 3.7149 33 1 5.7210 -8.9200 5.3668 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882563549.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:27 Heat of formation + Delta-G solvation = -76.048007 kcal Electronic energy + Delta-G solvation = -18124.430070 eV Core-core repulsion = 15016.392621 eV Total energy + Delta-G solvation = -3108.037449 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.76789 -38.16733 -37.19549 -36.93577 -35.87811 -33.50635 -33.10643 -29.58033 -27.57652 -25.72920 -23.67809 -23.48541 -20.83730 -20.33561 -19.17320 -18.65693 -18.10962 -17.46723 -17.04416 -16.55005 -16.47134 -16.03634 -15.73813 -15.11818 -14.90310 -14.46893 -14.17667 -14.01569 -13.71725 -13.38846 -13.19693 -13.12382 -12.92876 -12.90240 -12.76883 -12.74300 -12.22321 -12.12776 -11.86821 -11.70146 -11.38777 -11.16244 -10.63766 -10.50574 -10.31508 -9.66399 -8.25331 -6.39035 -0.67481 -0.23248 0.55862 0.96079 1.41571 1.42984 1.54052 1.58675 1.87394 2.38550 2.82853 3.08359 3.28692 3.58403 3.86676 4.02481 4.05096 4.15944 4.29281 4.34868 4.54209 4.67223 4.75093 4.79418 5.01274 5.06221 5.12404 5.29820 5.30863 5.69118 5.69660 6.07577 6.16735 6.74948 7.31266 8.86853 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.003706 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.614611 B = 7553.606805 C = 8658.612000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.591 4.591 11 S 2.625 3.375 12 O -0.997 6.997 13 O -0.997 6.997 14 N -1.105 6.105 15 C 0.109 3.891 16 C -0.046 4.046 17 C -0.161 4.161 18 C -0.206 4.206 19 C 0.093 3.907 20 N -0.500 5.500 21 S 0.233 5.767 22 H 0.267 0.733 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.429 0.571 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.181 0.819 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.706 -19.003 4.070 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.093 0.907 9 C -0.020 4.020 10 C -0.723 4.723 11 S 2.721 3.279 12 O -0.988 6.988 13 O -0.986 6.986 14 N -0.868 5.868 15 C -0.018 4.018 16 C -0.087 4.087 17 C -0.293 4.293 18 C -0.241 4.241 19 C -0.104 4.104 20 N -0.320 5.320 21 S 0.386 5.614 22 H 0.076 0.924 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.159 0.841 26 H 0.162 0.838 27 H 0.266 0.734 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.198 0.802 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 13.656 -18.197 3.883 23.080 hybrid contribution -1.075 0.388 0.276 1.175 sum 12.582 -17.808 4.159 22.198 Atomic orbital electron populations 1.70095 1.08027 1.28286 1.50957 1.26090 0.95833 1.03806 0.94444 0.85339 0.78648 0.77814 0.78612 1.19618 1.20902 1.18234 1.21532 0.93988 0.90884 1.51391 0.90653 1.18830 0.93674 0.93100 0.96444 1.30359 1.12828 1.16729 1.12375 1.04304 0.74575 0.76353 0.72661 1.93511 1.72964 1.85755 1.46542 1.93502 1.72708 1.85380 1.47039 1.55206 1.52198 1.50892 1.28469 1.21508 0.93017 0.98952 0.88355 1.20288 0.96547 0.97716 0.94128 1.25501 1.00710 1.02664 1.00375 1.21718 1.03495 1.06580 0.92311 1.23387 0.87751 0.96072 1.03225 1.76825 1.27113 1.21488 1.06594 1.84200 1.05998 1.58147 1.13100 0.92419 0.97448 0.97421 0.84127 0.83781 0.73420 0.90149 0.90319 0.86903 0.87260 0.80188 0.77245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.44 0.28 -56.18 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 9 C 0.02 0.94 4.98 29.85 0.15 1.09 16 10 C -0.59 -21.08 6.01 71.98 0.43 -20.65 16 11 S 2.62 85.89 5.46 -56.49 -0.31 85.59 16 12 O -1.00 -39.17 18.08 -127.65 -2.31 -41.48 16 13 O -1.00 -39.12 17.49 -127.65 -2.23 -41.35 16 14 N -1.11 -22.09 5.89 -187.48 -1.10 -23.19 16 15 C 0.11 1.81 6.11 86.38 0.53 2.34 16 16 C -0.05 -0.51 5.93 29.85 0.18 -0.34 16 17 C -0.16 -2.28 5.85 24.97 0.15 -2.13 16 18 C -0.21 -2.67 10.17 21.45 0.22 -2.45 16 19 C 0.09 1.34 11.27 84.85 0.96 2.30 16 20 N -0.50 -10.09 12.09 -62.61 -0.76 -10.85 16 21 S 0.23 4.06 23.72 -56.49 -1.34 2.72 16 22 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 23 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 24 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.14 4.33 8.14 -2.39 -0.02 4.32 16 26 H 0.14 4.44 8.14 -2.40 -0.02 4.42 16 27 H 0.43 6.25 8.62 -96.75 -0.83 5.42 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.48 7.69 -2.39 -0.02 1.46 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.21 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -78.45 317.24 -2.14 -80.60 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.29 Total: 7.96 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 3.30 Total: -48.83 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -1.58 Total: -90.22 kcal Atomic # 8 Polarization: -78.29 SS G_CDS: -4.54 Total: -82.83 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 89.95 SS G_CDS: -1.65 Total: 88.30 kcal Total: -78.45 -2.14 -80.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882563549.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.549 kcal (2) G-P(sol) polarization free energy of solvation -78.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds