Wall clock time and date at job start Tue Mar 31 2020 03:54:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86802 * 119.99991 * 2 1
4 4 H 1.48503 * 109.47041 * 240.00196 * 3 2 1
5 5 H 1.48494 * 109.47364 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47189 * 120.00348 * 3 2 1
7 7 C 1.37871 * 119.99915 * 180.02562 * 2 1 3
8 8 H 1.08011 * 120.00015 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00191 * 359.97438 * 7 2 1
10 10 N 1.46502 * 109.47014 * 179.97438 * 9 7 2
11 11 C 1.33786 * 124.18033 * 270.03449 * 10 9 7
12 12 O 1.21542 * 123.77011 * 359.96652 * 11 10 9
13 13 N 1.34867 * 112.50306 * 180.02562 * 11 10 9
14 14 C 1.47308 * 106.43646 * 359.86796 * 13 11 10
15 15 H 1.09000 * 110.59823 * 118.73140 * 14 13 11
16 16 C 1.53001 * 110.59910 * 241.52050 * 14 13 11
17 17 C 1.50705 * 109.47440 * 289.04251 * 16 14 13
18 18 C 1.38166 * 120.02891 * 96.89559 * 17 16 14
19 19 C 1.38240 * 120.05666 * 180.02562 * 18 17 16
20 20 C 1.38283 * 120.11185 * 359.97438 * 19 18 17
21 21 C 1.38128 * 120.05684 * 0.02562 * 20 19 18
22 22 C 1.38708 * 120.02854 * 276.86235 * 17 16 14
23 23 O 1.35901 * 120.05458 * 0.03295 * 22 17 16
24 24 C 1.34770 * 124.17399 * 90.00366 * 10 9 7
25 25 O 1.21231 * 127.16309 * 0.06399 * 24 10 9
26 26 H 0.97011 * 119.99954 * 359.97438 * 1 2 3
27 27 H 1.08996 * 109.47147 * 59.99720 * 9 7 2
28 28 H 1.09003 * 109.46798 * 299.99678 * 9 7 2
29 29 H 0.96998 * 126.86981 * 179.97438 * 13 11 10
30 30 H 1.09003 * 109.47657 * 169.03879 * 16 14 13
31 31 H 1.08999 * 109.47131 * 49.04102 * 16 14 13
32 32 H 1.08004 * 119.97346 * 359.97438 * 18 17 16
33 33 H 1.07998 * 119.94474 * 180.02562 * 19 18 17
34 34 H 1.08001 * 119.97740 * 179.97438 * 20 19 18
35 35 H 1.08000 * 120.02664 * 179.72259 * 21 20 19
36 36 H 0.96697 * 114.00459 * 273.71301 * 23 22 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6964 -1.2126
5 1 1.2842 2.7465 -0.0006
6 1 3.1029 1.6964 1.2124
7 6 2.0044 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2509 -2.4991 -0.0005
10 7 2.2030 -3.6126 -0.0018
11 6 2.6911 -4.1829 -1.1092
12 8 2.3938 -3.8356 -2.2353
13 7 3.5490 -5.1874 -0.8373
14 6 3.6311 -5.2797 0.6306
15 1 3.2892 -6.2563 0.9731
16 6 5.0603 -5.0138 1.1076
17 6 5.9413 -6.1758 0.7272
18 6 6.7057 -6.1167 -0.4222
19 6 7.5136 -7.1826 -0.7720
20 6 7.5595 -8.3100 0.0275
21 6 6.7972 -8.3740 1.1776
22 6 5.9860 -7.3053 1.5311
23 8 5.2351 -7.3658 2.6622
24 6 2.6958 -4.1885 1.1126
25 8 2.4437 -3.8949 2.2615
26 1 -0.4850 0.8401 0.0004
27 1 0.6239 -2.5566 -0.8902
28 1 0.6247 -2.5570 0.8897
29 1 4.0209 -5.7397 -1.4801
30 1 5.0654 -4.8933 2.1909
31 1 5.4364 -4.1042 0.6392
32 1 6.6714 -5.2375 -1.0485
33 1 8.1107 -7.1343 -1.6706
34 1 8.1911 -9.1416 -0.2481
35 1 6.8300 -9.2565 1.7992
36 1 5.6613 -6.9775 3.4386
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000924849500.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:54:19
Heat of formation + Delta-G solvation = -64.303089 kcal
Electronic energy + Delta-G solvation = -22813.110917 eV
Core-core repulsion = 19263.219038 eV
Total energy + Delta-G solvation = -3549.891879 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 290.110 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.73472 -40.04511 -37.84137 -36.85289 -35.78417 -34.68551 -32.96156 -32.06517
-30.23421 -28.61795 -27.74925 -24.77415 -23.34607 -22.83614 -22.09786 -21.10319
-19.77970 -18.51306 -17.47396 -16.97605 -16.42450 -16.17599 -15.85826 -15.59149
-15.36014 -14.94671 -14.73565 -14.15137 -14.10263 -13.67949 -13.49220 -13.27095
-13.12286 -12.42043 -12.32007 -12.21441 -11.94582 -11.54898 -11.50255 -11.13861
-10.74284 -10.67763 -10.43077 -10.04570 -9.89453 -9.55207 -9.26073 -9.04210
-8.75837 -8.56466 -8.50687 -6.13396 -4.18717 0.95747 1.04309 2.24926
2.98951 3.31156 3.34179 3.34831 3.37390 3.66244 3.79232 3.98812
4.33072 4.41711 4.59863 4.71817 4.77859 4.92047 5.02947 5.12583
5.22768 5.24719 5.50081 5.55331 5.73087 5.85565 5.98170 6.08804
6.20763 6.28945 6.55508 6.60681 7.05718 7.19845 7.23497 7.43800
7.78963 7.97511 8.03515 8.10845 8.73799 8.87847 9.45958 10.96057
Molecular weight = 290.11amu
Principal moments of inertia in cm(-1)
A = 0.024236 B = 0.004090 C = 0.004010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1155.011603 B = 6844.306284 C = 6981.111307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.066 3.934
3 Si 0.904 3.096
4 H -0.275 1.275
5 H -0.284 1.284
6 H -0.275 1.275
7 C -0.534 4.534
8 H 0.059 0.941
9 C 0.249 3.751
10 N -0.556 5.556
11 C 0.700 3.300
12 O -0.541 6.541
13 N -0.737 5.737
14 C 0.100 3.900
15 H 0.121 0.879
16 C -0.074 4.074
17 C -0.107 4.107
18 C -0.098 4.098
19 C -0.127 4.127
20 C -0.108 4.108
21 C -0.144 4.144
22 C 0.111 3.889
23 O -0.494 6.494
24 C 0.523 3.477
25 O -0.472 6.472
26 H 0.267 0.733
27 H 0.054 0.946
28 H 0.052 0.948
29 H 0.430 0.570
30 H 0.097 0.903
31 H 0.086 0.914
32 H 0.129 0.871
33 H 0.125 0.875
34 H 0.125 0.875
35 H 0.127 0.873
36 H 0.392 0.608
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.524 -16.724 2.544 22.960
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.137 4.137
3 Si 0.731 3.269
4 H -0.200 1.200
5 H -0.210 1.210
6 H -0.200 1.200
7 C -0.573 4.573
8 H 0.077 0.923
9 C 0.131 3.869
10 N -0.299 5.299
11 C 0.401 3.599
12 O -0.414 6.414
13 N -0.403 5.403
14 C -0.009 4.009
15 H 0.138 0.862
16 C -0.112 4.112
17 C -0.108 4.108
18 C -0.116 4.116
19 C -0.145 4.145
20 C -0.126 4.126
21 C -0.162 4.162
22 C 0.067 3.933
23 O -0.304 6.304
24 C 0.308 3.692
25 O -0.343 6.343
26 H 0.077 0.923
27 H 0.072 0.928
28 H 0.070 0.930
29 H 0.273 0.727
30 H 0.115 0.885
31 H 0.105 0.895
32 H 0.147 0.853
33 H 0.143 0.857
34 H 0.142 0.858
35 H 0.145 0.855
36 H 0.248 0.752
Dipole moment (debyes) X Y Z Total
from point charges 14.510 -16.394 2.220 22.005
hybrid contribution 1.031 0.822 0.019 1.319
sum 15.541 -15.572 2.239 22.114
Atomic orbital electron populations
1.69912 1.06023 1.27534 1.49428 1.24892 0.94954 0.99333 0.94563
0.86454 0.79499 0.82175 0.78736 1.20034 1.20961 1.20043 1.21200
0.93325 0.90142 1.52604 0.92272 1.19603 0.86629 0.80725 0.99911
1.46815 1.43005 1.33890 1.06232 1.16077 0.79323 0.79536 0.85001
1.90956 1.63274 1.66294 1.20914 1.45681 1.49581 1.38129 1.06861
1.21973 0.96064 1.00863 0.82019 0.86153 1.20630 0.91082 0.96404
1.03097 1.20164 0.98898 0.95251 0.96501 1.21094 0.95700 0.99071
0.95780 1.21187 0.99567 0.93693 1.00054 1.21047 0.98914 0.98197
0.94439 1.21397 0.96805 0.99183 0.98825 1.18345 0.92772 0.93052
0.89176 1.84843 1.44068 1.83260 1.18260 1.20558 0.80735 0.82354
0.85545 1.90739 1.60132 1.65245 1.18145 0.92345 0.92817 0.92962
0.72686 0.88478 0.89509 0.85293 0.85705 0.85752 0.85454 0.75191
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16
2 C 0.07 1.88 5.46 -17.83 -0.10 1.78 16
3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16
4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
7 C -0.53 -15.33 9.39 -34.44 -0.32 -15.65 16
8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16
9 C 0.25 6.66 5.45 -5.19 -0.03 6.63 16
10 N -0.56 -12.44 2.59 -121.92 -0.32 -12.75 16
11 C 0.70 14.46 8.63 -87.72 -0.76 13.71 16
12 O -0.54 -13.15 17.48 5.33 0.09 -13.05 16
13 N -0.74 -10.97 6.16 -59.10 -0.36 -11.34 16
14 C 0.10 1.43 3.62 -68.21 -0.25 1.19 16
15 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16
16 C -0.07 -0.87 4.79 -27.88 -0.13 -1.01 16
17 C -0.11 -1.08 5.04 -104.47 -0.53 -1.61 16
18 C -0.10 -0.90 9.67 -39.61 -0.38 -1.29 16
19 C -0.13 -1.01 10.04 -39.56 -0.40 -1.41 16
20 C -0.11 -0.82 10.04 -39.60 -0.40 -1.22 16
21 C -0.14 -1.20 9.99 -39.43 -0.39 -1.60 16
22 C 0.11 1.06 6.68 -39.22 -0.26 0.80 16
23 O -0.49 -4.51 12.68 -19.43 -0.25 -4.76 16
24 C 0.52 10.27 7.65 -10.55 -0.08 10.19 16
25 O -0.47 -10.43 17.76 5.60 0.10 -10.33 16
26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16
27 H 0.05 1.53 7.86 -51.93 -0.41 1.12 16
28 H 0.05 1.46 8.00 -51.93 -0.42 1.05 16
29 H 0.43 5.23 8.96 -40.82 -0.37 4.86 16
30 H 0.10 1.09 7.75 -51.93 -0.40 0.69 16
31 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16
32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16
33 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16
34 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16
35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16
36 H 0.39 1.96 9.06 45.56 0.41 2.38 16
LS Contribution 323.43 15.07 4.87 4.87
Total: -1.00 -34.81 323.43 -7.43 -42.23
By element:
Atomic # 1 Polarization: 6.67 SS G_CDS: -3.26 Total: 3.41 kcal
Atomic # 6 Polarization: 14.55 SS G_CDS: -4.03 Total: 10.52 kcal
Atomic # 7 Polarization: -49.80 SS G_CDS: 0.06 Total: -49.74 kcal
Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal
Total LS contribution 4.87 Total: 4.87 kcal
Total: -34.81 -7.43 -42.23 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000924849500.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.068 kcal
(2) G-P(sol) polarization free energy of solvation -34.808 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.876 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds