Wall clock time and date at job start Tue Mar 31 2020 03:54:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86802 * 119.99991 * 2 1
4 4 H 1.48503 * 109.47041 * 240.00196 * 3 2 1
5 5 H 1.48494 * 109.47364 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47189 * 120.00348 * 3 2 1
7 7 C 1.37871 * 119.99915 * 180.02562 * 2 1 3
8 8 H 1.08011 * 120.00015 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00191 * 359.97438 * 7 2 1
10 10 N 1.46502 * 109.47014 * 179.97438 * 9 7 2
11 11 C 1.33786 * 124.18033 * 270.03449 * 10 9 7
12 12 O 1.21542 * 123.77011 * 359.96652 * 11 10 9
13 13 N 1.34867 * 112.50306 * 180.02562 * 11 10 9
14 14 C 1.47308 * 106.43646 * 359.86796 * 13 11 10
15 15 H 1.09000 * 110.59823 * 118.73140 * 14 13 11
16 16 C 1.53001 * 110.59910 * 241.52050 * 14 13 11
17 17 C 1.50705 * 109.47440 * 289.04251 * 16 14 13
18 18 C 1.38166 * 120.02891 * 96.89559 * 17 16 14
19 19 C 1.38240 * 120.05666 * 180.02562 * 18 17 16
20 20 C 1.38283 * 120.11185 * 359.97438 * 19 18 17
21 21 C 1.38128 * 120.05684 * 0.02562 * 20 19 18
22 22 C 1.38708 * 120.02854 * 276.86235 * 17 16 14
23 23 O 1.35901 * 120.05458 * 0.03295 * 22 17 16
24 24 C 1.34770 * 124.17399 * 90.00366 * 10 9 7
25 25 O 1.21231 * 127.16309 * 0.06399 * 24 10 9
26 26 H 0.97011 * 119.99954 * 359.97438 * 1 2 3
27 27 H 1.08996 * 109.47147 * 59.99720 * 9 7 2
28 28 H 1.09003 * 109.46798 * 299.99678 * 9 7 2
29 29 H 0.96998 * 126.86981 * 179.97438 * 13 11 10
30 30 H 1.09003 * 109.47657 * 169.03879 * 16 14 13
31 31 H 1.08999 * 109.47131 * 49.04102 * 16 14 13
32 32 H 1.08004 * 119.97346 * 359.97438 * 18 17 16
33 33 H 1.07998 * 119.94474 * 180.02562 * 19 18 17
34 34 H 1.08001 * 119.97740 * 179.97438 * 20 19 18
35 35 H 1.08000 * 120.02664 * 179.72259 * 21 20 19
36 36 H 0.96697 * 114.00459 * 273.71301 * 23 22 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6964 -1.2126
5 1 1.2842 2.7465 -0.0006
6 1 3.1029 1.6964 1.2124
7 6 2.0044 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2509 -2.4991 -0.0005
10 7 2.2030 -3.6126 -0.0018
11 6 2.6911 -4.1829 -1.1092
12 8 2.3938 -3.8356 -2.2353
13 7 3.5490 -5.1874 -0.8373
14 6 3.6311 -5.2797 0.6306
15 1 3.2892 -6.2563 0.9731
16 6 5.0603 -5.0138 1.1076
17 6 5.9413 -6.1758 0.7272
18 6 6.7057 -6.1167 -0.4222
19 6 7.5136 -7.1826 -0.7720
20 6 7.5595 -8.3100 0.0275
21 6 6.7972 -8.3740 1.1776
22 6 5.9860 -7.3053 1.5311
23 8 5.2351 -7.3658 2.6622
24 6 2.6958 -4.1885 1.1126
25 8 2.4437 -3.8949 2.2615
26 1 -0.4850 0.8401 0.0004
27 1 0.6239 -2.5566 -0.8902
28 1 0.6247 -2.5570 0.8897
29 1 4.0209 -5.7397 -1.4801
30 1 5.0654 -4.8933 2.1909
31 1 5.4364 -4.1042 0.6392
32 1 6.6714 -5.2375 -1.0485
33 1 8.1107 -7.1343 -1.6706
34 1 8.1911 -9.1416 -0.2481
35 1 6.8300 -9.2565 1.7992
36 1 5.6613 -6.9775 3.4386
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000924849500.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:54:19
Heat of formation + Delta-G solvation = -90.622839 kcal
Electronic energy + Delta-G solvation = -22814.252227 eV
Core-core repulsion = 19263.219038 eV
Total energy + Delta-G solvation = -3551.033189 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 290.110 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-43.31340 -40.76073 -39.54153 -37.52293 -37.27618 -36.46396 -34.73822 -33.38247
-30.90922 -29.93673 -29.45938 -26.15287 -25.25456 -23.53902 -23.41281 -22.02835
-21.44564 -19.16711 -19.12867 -18.83850 -17.80216 -17.47872 -16.85824 -16.83015
-16.79337 -16.32810 -15.94851 -15.87125 -15.17539 -15.05037 -14.86179 -14.57304
-14.18633 -13.97316 -13.69737 -13.19942 -13.10938 -12.95660 -12.85007 -12.68176
-12.42547 -12.24787 -12.01192 -11.77206 -11.40520 -11.07195 -10.70910 -10.70151
-10.41829 -9.76242 -9.46041 -8.32678 -6.47778 0.28026 0.40854 0.68466
1.34917 1.40427 1.41316 1.50329 2.07693 2.24260 2.36596 2.73818
2.98089 3.02032 3.38103 3.77379 3.78465 3.87457 4.07149 4.25190
4.36826 4.40470 4.58667 4.66864 4.75204 4.77298 4.97531 5.05974
5.06458 5.10562 5.48613 5.56424 5.58048 5.62457 5.83339 5.85159
5.97492 6.29259 6.46235 6.58612 6.91911 7.14828 7.26553 8.77223
Molecular weight = 290.11amu
Principal moments of inertia in cm(-1)
A = 0.024236 B = 0.004090 C = 0.004010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1155.011603 B = 6844.306284 C = 6981.111307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.013 3.987
3 Si 0.975 3.025
4 H -0.269 1.269
5 H -0.273 1.273
6 H -0.265 1.265
7 C -0.556 4.556
8 H 0.056 0.944
9 C 0.263 3.737
10 N -0.571 5.571
11 C 0.698 3.302
12 O -0.584 6.584
13 N -0.703 5.703
14 C 0.121 3.879
15 H 0.147 0.853
16 C -0.065 4.065
17 C -0.121 4.121
18 C -0.105 4.105
19 C -0.130 4.130
20 C -0.103 4.103
21 C -0.150 4.150
22 C 0.107 3.893
23 O -0.507 6.507
24 C 0.516 3.484
25 O -0.501 6.501
26 H 0.272 0.728
27 H 0.026 0.974
28 H 0.030 0.970
29 H 0.448 0.552
30 H 0.104 0.896
31 H 0.078 0.922
32 H 0.129 0.871
33 H 0.144 0.856
34 H 0.149 0.851
35 H 0.141 0.859
36 H 0.408 0.592
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.100 -17.890 2.665 25.588
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.187 4.187
3 Si 0.798 3.202
4 H -0.194 1.194
5 H -0.198 1.198
6 H -0.190 1.190
7 C -0.594 4.594
8 H 0.075 0.925
9 C 0.143 3.857
10 N -0.315 5.315
11 C 0.399 3.601
12 O -0.460 6.460
13 N -0.369 5.369
14 C 0.013 3.987
15 H 0.165 0.835
16 C -0.103 4.103
17 C -0.121 4.121
18 C -0.123 4.123
19 C -0.148 4.148
20 C -0.121 4.121
21 C -0.169 4.169
22 C 0.062 3.938
23 O -0.320 6.320
24 C 0.304 3.696
25 O -0.373 6.373
26 H 0.081 0.919
27 H 0.044 0.956
28 H 0.048 0.952
29 H 0.295 0.705
30 H 0.122 0.878
31 H 0.097 0.903
32 H 0.147 0.853
33 H 0.162 0.838
34 H 0.167 0.833
35 H 0.159 0.841
36 H 0.267 0.733
Dipole moment (debyes) X Y Z Total
from point charges 17.141 -17.625 2.363 24.699
hybrid contribution 0.244 1.081 0.027 1.109
sum 17.385 -16.544 2.390 24.117
Atomic orbital electron populations
1.70027 1.07595 1.28810 1.49685 1.25871 0.95927 1.03204 0.93692
0.85360 0.78335 0.77392 0.79138 1.19374 1.19801 1.18986 1.21469
0.93343 0.91328 1.53280 0.92546 1.19036 0.87085 0.82124 0.97409
1.46743 1.43031 1.33583 1.08103 1.16141 0.79843 0.80298 0.83847
1.90921 1.64959 1.67876 1.22264 1.45442 1.47599 1.36167 1.07739
1.22025 0.96457 0.99425 0.80830 0.83545 1.20537 0.89234 0.97182
1.03394 1.19964 0.99795 0.94846 0.97540 1.21197 0.95931 0.99647
0.95558 1.21443 0.99271 0.93294 1.00776 1.21388 0.98355 0.98660
0.93663 1.21621 0.96605 0.99287 0.99362 1.18458 0.92916 0.93156
0.89251 1.84793 1.44761 1.83552 1.18927 1.21410 0.80747 0.82913
0.84547 1.90713 1.61132 1.66375 1.19081 0.91894 0.95625 0.95151
0.70522 0.87797 0.90290 0.85274 0.83786 0.83319 0.84105 0.73302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.89 13.29 21.44 0.28 -55.61 16
2 C 0.01 0.77 5.46 84.65 0.46 1.24 16
3 Si 0.97 44.95 29.54 68.60 2.03 46.97 16
4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
5 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16
6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16
7 C -0.56 -32.81 9.39 25.60 0.24 -32.57 16
8 H 0.06 3.27 7.81 -2.90 -0.02 3.25 16
9 C 0.26 14.79 5.45 85.63 0.47 15.25 16
10 N -0.57 -26.31 2.59 -776.90 -2.01 -28.32 16
11 C 0.70 29.19 8.63 179.33 1.55 30.73 16
12 O -0.58 -29.06 17.48 -3.85 -0.07 -29.12 16
13 N -0.70 -20.08 6.16 -459.12 -2.83 -22.91 16
14 C 0.12 3.28 3.62 44.37 0.16 3.45 16
15 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16
16 C -0.07 -1.43 4.79 29.85 0.14 -1.29 16
17 C -0.12 -2.15 5.04 -19.77 -0.10 -2.25 16
18 C -0.11 -1.67 9.67 22.25 0.22 -1.46 16
19 C -0.13 -1.65 10.04 22.28 0.22 -1.42 16
20 C -0.10 -1.19 10.04 22.25 0.22 -0.97 16
21 C -0.15 -2.05 9.99 22.37 0.22 -1.83 16
22 C 0.11 1.76 6.68 22.50 0.15 1.91 16
23 O -0.51 -8.06 12.68 -92.44 -1.17 -9.24 16
24 C 0.52 20.43 7.65 87.94 0.67 21.10 16
25 O -0.50 -22.50 17.76 -2.88 -0.05 -22.56 16
26 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16
27 H 0.03 1.56 7.86 -2.39 -0.02 1.54 16
28 H 0.03 1.81 8.00 -2.39 -0.02 1.79 16
29 H 0.45 9.94 8.96 -92.71 -0.83 9.11 16
30 H 0.10 2.18 7.75 -2.39 -0.02 2.16 16
31 H 0.08 1.88 8.04 -2.39 -0.02 1.86 16
32 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16
33 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16
34 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16
35 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16
36 H 0.41 3.23 9.06 -74.06 -0.67 2.55 16
Total: -1.00 -77.20 323.43 0.45 -76.75
By element:
Atomic # 1 Polarization: 12.50 SS G_CDS: -0.36 Total: 12.14 kcal
Atomic # 6 Polarization: 27.26 SS G_CDS: 4.63 Total: 31.89 kcal
Atomic # 7 Polarization: -102.28 SS G_CDS: -4.55 Total: -106.84 kcal
Atomic # 8 Polarization: -59.62 SS G_CDS: -1.29 Total: -60.91 kcal
Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -77.20 0.45 -76.75 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000924849500.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.873 kcal
(2) G-P(sol) polarization free energy of solvation -77.199 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.750 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.623 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds