Wall clock time and date at job start Tue Mar 31 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38632 * 120.46907 * 2 1 4 4 C 1.38580 * 118.49053 * 180.02562 * 3 2 1 5 5 C 1.38607 * 119.34944 * 359.97438 * 4 3 2 6 6 N 1.31493 * 120.90277 * 359.97438 * 5 4 3 7 7 C 1.32744 * 121.64116 * 359.70489 * 6 5 4 8 8 C 1.48171 * 119.72599 * 180.28663 * 7 6 5 9 9 O 1.21515 * 119.99843 * 186.09394 * 8 7 6 10 10 N 1.34776 * 119.99564 * 6.09553 * 8 7 6 11 11 C 1.46500 * 119.99559 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47384 * 34.99853 * 11 10 8 13 13 C 1.52991 * 109.47560 * 274.99748 * 11 10 8 14 14 C 1.53006 * 109.46933 * 154.99714 * 11 10 8 15 15 C 1.53941 * 113.74469 * 278.74183 * 14 11 10 16 16 N 1.47805 * 86.03939 * 222.08517 * 15 14 11 17 17 C 1.36936 * 134.45752 * 204.64851 * 16 15 14 18 18 H 1.08005 * 120.00125 * 179.86463 * 17 16 15 19 19 C 1.38813 * 119.99982 * 359.85903 * 17 16 15 20 20 N 1.31619 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47434 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46823 * 120.00594 * 21 19 17 24 24 H 1.48506 * 109.46952 * 240.00007 * 21 19 17 25 25 C 1.47584 * 91.05264 * 24.54751 * 16 15 14 26 26 H 1.09000 * 109.47284 * 96.73564 * 1 2 3 27 27 H 1.09000 * 109.46720 * 336.73592 * 1 2 3 28 28 H 1.09001 * 109.46657 * 216.73526 * 1 2 3 29 29 H 1.08002 * 120.75821 * 0.02563 * 3 2 1 30 30 H 1.07994 * 120.32853 * 180.02562 * 4 3 2 31 31 H 1.07999 * 119.55001 * 179.97438 * 5 4 3 32 32 H 0.96994 * 120.00055 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.46974 * 60.00285 * 13 11 10 34 34 H 1.08996 * 109.47736 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47013 * 300.00935 * 13 11 10 36 36 H 1.09001 * 112.94164 * 50.33700 * 14 11 10 37 37 H 1.09005 * 113.76874 * 336.35254 * 15 14 11 38 38 H 1.09004 * 113.77116 * 107.74223 * 15 14 11 39 39 H 0.97001 * 119.99896 * 179.97438 * 20 19 17 40 40 H 1.08997 * 113.77209 * 221.15723 * 25 16 15 41 41 H 1.09000 * 113.87112 * 89.76699 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0839 -0.0005 6 7 3.5408 -1.2023 0.0005 7 6 2.2133 -1.2003 0.0074 8 6 1.4767 -2.4860 0.0147 9 8 0.2662 -2.4932 -0.0907 10 7 2.1495 -3.6473 0.1383 11 6 1.4212 -4.9184 0.1461 12 1 0.5648 -4.8506 -0.5248 13 6 0.9347 -5.2188 1.5652 14 6 2.3491 -6.0407 -0.3232 15 6 2.4850 -6.1334 -1.8538 16 7 2.3910 -7.5971 -1.6709 17 6 2.8101 -8.6827 -2.3927 18 1 2.6131 -9.6808 -2.0303 19 6 3.4880 -8.5002 -3.5902 20 7 3.7284 -7.2838 -4.0316 21 14 4.0591 -9.9812 -4.5751 22 1 3.6675 -11.2270 -3.8680 23 1 3.4271 -9.9556 -5.9187 24 1 5.5362 -9.9383 -4.7220 25 6 1.6669 -7.4188 -0.3974 26 1 -0.3634 -0.1205 -1.0206 27 1 -0.3633 0.9441 0.4059 28 1 -0.3633 -0.8236 0.6147 29 1 1.6902 2.1416 0.0004 30 1 4.1722 2.0598 -0.0001 31 1 5.3114 -0.1249 -0.0014 32 1 3.1158 -3.6414 0.2221 33 1 0.2735 -4.4192 1.8995 34 1 0.3932 -6.1647 1.5711 35 1 1.7910 -5.2865 2.2361 36 1 3.3033 -6.0513 0.2035 37 1 1.6430 -5.7035 -2.3965 38 1 3.4513 -5.7976 -2.2303 39 1 4.2025 -7.1563 -4.8683 40 1 1.9812 -8.1073 0.3869 41 1 0.5838 -7.3673 -0.5092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969451594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:36 Heat of formation + Delta-G solvation = 53.040716 kcal Electronic energy + Delta-G solvation = -22650.933013 eV Core-core repulsion = 19339.681300 eV Total energy + Delta-G solvation = -3311.251713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82349 -39.18430 -37.90524 -34.97738 -33.59127 -32.41199 -31.98568 -30.24300 -27.51548 -27.46120 -25.13394 -24.49784 -23.80171 -22.44292 -21.43070 -20.34470 -19.25553 -17.72644 -16.93835 -16.66104 -15.90127 -15.55823 -15.34485 -14.93792 -14.79527 -13.95820 -13.79173 -13.74048 -13.38143 -13.32099 -12.96483 -12.80378 -12.57147 -12.29201 -12.15404 -11.96013 -11.61323 -11.27242 -11.23963 -10.88139 -10.68125 -10.31041 -10.06780 -9.99238 -9.87156 -9.69835 -9.44036 -9.30716 -9.16983 -8.75670 -8.68134 -6.82373 -5.71914 -3.04163 0.53661 1.01630 2.79964 3.26009 3.41665 3.46663 3.49451 3.76196 4.10251 4.49004 4.55053 4.63146 4.72920 4.77290 5.12147 5.19862 5.32651 5.34428 5.39148 5.51758 5.58243 5.68224 5.70841 5.80670 5.86044 5.96410 6.00657 6.08199 6.17871 6.28311 6.39682 6.43886 6.49511 6.64811 6.72860 6.86875 7.29926 7.42565 7.52074 7.62345 7.83508 8.03012 8.37325 9.09290 9.75634 10.65434 11.45172 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021703 B = 0.003585 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.853323 B = 7808.382572 C = 8528.055075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.089 4.089 4 C -0.149 4.149 5 C 0.090 3.910 6 N -0.451 5.451 7 C 0.076 3.924 8 C 0.568 3.432 9 O -0.534 6.534 10 N -0.695 5.695 11 C 0.149 3.851 12 H 0.089 0.911 13 C -0.158 4.158 14 C -0.146 4.146 15 C 0.171 3.829 16 N -0.613 5.613 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.131 3.869 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.409 0.591 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.252 0.748 40 H 0.044 0.956 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 17.907 11.668 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.169 4.169 5 C -0.070 4.070 6 N -0.162 5.162 7 C -0.062 4.062 8 C 0.353 3.647 9 O -0.411 6.411 10 N -0.345 5.345 11 C 0.044 3.956 12 H 0.107 0.893 13 C -0.216 4.216 14 C -0.166 4.166 15 C 0.046 3.954 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.004 3.996 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.245 0.755 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.235 16.841 11.314 20.412 hybrid contribution 0.494 0.198 -0.736 0.908 sum -1.741 17.039 10.578 20.131 Atomic orbital electron populations 1.21071 0.88986 1.03184 1.04168 1.20971 0.98472 0.92404 0.95956 1.21542 0.94178 0.98055 0.97748 1.22357 0.95277 0.99827 0.99487 1.22793 1.00536 0.87294 0.96404 1.67571 1.07136 1.31948 1.09559 1.21134 0.89844 0.93868 1.01351 1.17837 0.86609 0.83164 0.77073 1.90712 1.13141 1.86661 1.50625 1.45969 1.11617 1.05253 1.71615 1.21162 0.95584 0.81774 0.97079 0.89339 1.22129 1.01102 1.01846 0.96528 1.23817 0.98430 0.93759 1.00616 1.22291 1.00172 0.84335 0.88639 1.46001 1.63626 1.02244 1.22046 1.19077 1.29337 0.85329 1.01230 0.90233 1.24784 1.01284 0.96675 0.97777 1.69837 1.45740 1.19003 1.22214 0.86064 0.78146 0.81655 0.80009 1.20475 1.21791 1.21727 1.22488 0.94926 0.92401 0.89786 0.90275 0.92426 0.88097 0.84305 0.84370 0.82076 0.75469 0.92789 0.91325 0.92699 0.89331 0.95660 0.90990 0.93751 0.93773 0.94761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 8.76 36.01 0.32 -0.97 16 2 C -0.08 -0.88 5.93 -104.09 -0.62 -1.50 16 3 C -0.09 -0.79 9.83 -39.31 -0.39 -1.18 16 4 C -0.15 -1.20 10.11 -39.32 -0.40 -1.59 16 5 C 0.09 0.88 11.18 -17.56 -0.20 0.68 16 6 N -0.45 -5.90 9.56 -9.80 -0.09 -5.99 16 7 C 0.08 1.06 6.75 -83.01 -0.56 0.50 16 8 C 0.57 8.96 7.72 -12.18 -0.09 8.86 16 9 O -0.53 -9.24 12.96 5.35 0.07 -9.17 16 10 N -0.70 -10.67 5.07 -54.65 -0.28 -10.95 16 11 C 0.15 2.40 2.38 -67.93 -0.16 2.23 16 12 H 0.09 1.61 7.41 -51.93 -0.39 1.22 16 13 C -0.16 -2.16 9.31 37.15 0.35 -1.81 16 14 C -0.15 -2.73 3.47 -89.69 -0.31 -3.04 16 15 C 0.17 4.12 7.08 -2.84 -0.02 4.10 16 16 N -0.61 -16.09 3.70 -177.71 -0.66 -16.75 16 17 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.95 11.39 55.49 0.63 -27.32 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.13 2.68 7.64 -2.96 -0.02 2.65 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 28 H 0.10 1.29 5.82 -51.93 -0.30 0.99 16 29 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 31 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.41 5.98 7.95 -40.82 -0.32 5.65 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 38 H 0.07 1.92 7.16 -51.93 -0.37 1.55 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -33.50 340.94 -8.53 -42.03 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.96 Total: 3.44 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.36 Total: 2.07 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.40 Total: -61.01 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.50 -8.53 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969451594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.070 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds