Wall clock time and date at job start Tue Mar 31 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38632 * 120.46907 * 2 1 4 4 C 1.38580 * 118.49053 * 180.02562 * 3 2 1 5 5 C 1.38607 * 119.34944 * 359.97438 * 4 3 2 6 6 N 1.31493 * 120.90277 * 359.97438 * 5 4 3 7 7 C 1.32744 * 121.64116 * 359.70489 * 6 5 4 8 8 C 1.48171 * 119.72599 * 180.28663 * 7 6 5 9 9 O 1.21515 * 119.99843 * 186.09394 * 8 7 6 10 10 N 1.34776 * 119.99564 * 6.09553 * 8 7 6 11 11 C 1.46500 * 119.99559 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47384 * 34.99853 * 11 10 8 13 13 C 1.52991 * 109.47560 * 274.99748 * 11 10 8 14 14 C 1.53006 * 109.46933 * 154.99714 * 11 10 8 15 15 C 1.53941 * 113.74469 * 278.74183 * 14 11 10 16 16 N 1.47805 * 86.03939 * 222.08517 * 15 14 11 17 17 C 1.36936 * 134.45752 * 204.64851 * 16 15 14 18 18 H 1.08005 * 120.00125 * 179.86463 * 17 16 15 19 19 C 1.38813 * 119.99982 * 359.85903 * 17 16 15 20 20 N 1.31619 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47434 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46823 * 120.00594 * 21 19 17 24 24 H 1.48506 * 109.46952 * 240.00007 * 21 19 17 25 25 C 1.47584 * 91.05264 * 24.54751 * 16 15 14 26 26 H 1.09000 * 109.47284 * 96.73564 * 1 2 3 27 27 H 1.09000 * 109.46720 * 336.73592 * 1 2 3 28 28 H 1.09001 * 109.46657 * 216.73526 * 1 2 3 29 29 H 1.08002 * 120.75821 * 0.02563 * 3 2 1 30 30 H 1.07994 * 120.32853 * 180.02562 * 4 3 2 31 31 H 1.07999 * 119.55001 * 179.97438 * 5 4 3 32 32 H 0.96994 * 120.00055 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.46974 * 60.00285 * 13 11 10 34 34 H 1.08996 * 109.47736 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47013 * 300.00935 * 13 11 10 36 36 H 1.09001 * 112.94164 * 50.33700 * 14 11 10 37 37 H 1.09005 * 113.76874 * 336.35254 * 15 14 11 38 38 H 1.09004 * 113.77116 * 107.74223 * 15 14 11 39 39 H 0.97001 * 119.99896 * 179.97438 * 20 19 17 40 40 H 1.08997 * 113.77209 * 221.15723 * 25 16 15 41 41 H 1.09000 * 113.87112 * 89.76699 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0839 -0.0005 6 7 3.5408 -1.2023 0.0005 7 6 2.2133 -1.2003 0.0074 8 6 1.4767 -2.4860 0.0147 9 8 0.2662 -2.4932 -0.0907 10 7 2.1495 -3.6473 0.1383 11 6 1.4212 -4.9184 0.1461 12 1 0.5648 -4.8506 -0.5248 13 6 0.9347 -5.2188 1.5652 14 6 2.3491 -6.0407 -0.3232 15 6 2.4850 -6.1334 -1.8538 16 7 2.3910 -7.5971 -1.6709 17 6 2.8101 -8.6827 -2.3927 18 1 2.6131 -9.6808 -2.0303 19 6 3.4880 -8.5002 -3.5902 20 7 3.7284 -7.2838 -4.0316 21 14 4.0591 -9.9812 -4.5751 22 1 3.6675 -11.2270 -3.8680 23 1 3.4271 -9.9556 -5.9187 24 1 5.5362 -9.9383 -4.7220 25 6 1.6669 -7.4188 -0.3974 26 1 -0.3634 -0.1205 -1.0206 27 1 -0.3633 0.9441 0.4059 28 1 -0.3633 -0.8236 0.6147 29 1 1.6902 2.1416 0.0004 30 1 4.1722 2.0598 -0.0001 31 1 5.3114 -0.1249 -0.0014 32 1 3.1158 -3.6414 0.2221 33 1 0.2735 -4.4192 1.8995 34 1 0.3932 -6.1647 1.5711 35 1 1.7910 -5.2865 2.2361 36 1 3.3033 -6.0513 0.2035 37 1 1.6430 -5.7035 -2.3965 38 1 3.4513 -5.7976 -2.2303 39 1 4.2025 -7.1563 -4.8683 40 1 1.9812 -8.1073 0.3869 41 1 0.5838 -7.3673 -0.5092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969451594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:35 Heat of formation + Delta-G solvation = 30.393221 kcal Electronic energy + Delta-G solvation = -22651.915082 eV Core-core repulsion = 19339.681300 eV Total energy + Delta-G solvation = -3312.233782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78087 -40.46293 -39.42137 -36.34955 -34.57900 -34.07417 -33.13781 -31.55030 -29.37509 -28.36347 -26.66905 -25.84446 -25.35122 -23.44366 -22.74027 -21.58827 -20.83134 -18.92917 -18.71176 -17.85978 -16.98899 -16.93599 -16.48102 -16.39268 -15.95719 -15.72094 -15.08683 -14.95054 -14.62879 -14.46253 -14.10133 -13.99320 -13.67241 -13.47074 -13.32980 -13.18799 -13.07879 -12.92561 -12.86909 -12.69333 -12.50200 -11.97531 -11.75633 -11.48803 -11.25495 -11.01932 -10.88831 -10.75141 -10.36039 -10.17696 -9.82777 -8.93307 -7.91025 -5.25277 -0.31250 0.27194 1.44269 1.46006 1.56354 1.75685 2.11831 2.46703 2.87180 3.19090 3.29989 3.37903 3.71101 3.81498 3.88291 3.93546 4.00158 4.07621 4.28825 4.46083 4.53685 4.57238 4.60239 4.73244 4.79051 4.80199 4.82492 4.86565 4.99807 5.06903 5.12473 5.19194 5.24685 5.32065 5.35626 5.49622 5.56798 5.65496 5.72453 5.92260 6.46252 6.85642 6.90393 7.19155 7.60011 8.55990 9.26192 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021703 B = 0.003585 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.853323 B = 7808.382572 C = 8528.055075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.086 4.086 4 C -0.130 4.130 5 C 0.078 3.922 6 N -0.479 5.479 7 C 0.042 3.958 8 C 0.562 3.438 9 O -0.559 6.559 10 N -0.696 5.696 11 C 0.158 3.842 12 H 0.065 0.935 13 C -0.148 4.148 14 C -0.111 4.111 15 C 0.168 3.832 16 N -0.644 5.644 17 C -0.235 4.235 18 H 0.087 0.913 19 C -0.071 4.071 20 N -0.956 5.956 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.290 1.290 25 C 0.133 3.867 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.188 0.812 32 H 0.413 0.587 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.003 0.997 38 H 0.038 0.962 39 H 0.247 0.753 40 H 0.066 0.934 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 19.218 13.174 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.112 4.112 4 C -0.150 4.150 5 C -0.082 4.082 6 N -0.191 5.191 7 C -0.095 4.095 8 C 0.349 3.651 9 O -0.438 6.438 10 N -0.346 5.346 11 C 0.053 3.947 12 H 0.083 0.917 13 C -0.206 4.206 14 C -0.131 4.131 15 C 0.042 3.958 16 N -0.371 5.371 17 C -0.363 4.363 18 H 0.105 0.895 19 C -0.263 4.263 20 N -0.606 5.606 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.217 1.217 25 C 0.008 3.992 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.192 0.808 30 H 0.198 0.802 31 H 0.205 0.795 32 H 0.249 0.751 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.622 18.141 12.863 22.298 hybrid contribution 0.321 -0.095 -1.191 1.237 sum -1.302 18.047 11.672 21.532 Atomic orbital electron populations 1.20981 0.88968 1.03844 1.03131 1.21175 0.98770 0.92894 0.96210 1.21974 0.94752 0.98169 0.96275 1.22828 0.95203 1.00618 0.96345 1.23400 1.01798 0.87336 0.95676 1.67489 1.06928 1.33971 1.10684 1.20909 0.90525 0.93399 1.04651 1.18280 0.86569 0.83991 0.76282 1.90691 1.14184 1.87211 1.51726 1.45925 1.11716 1.05057 1.71886 1.20930 0.94050 0.81442 0.98308 0.91726 1.22039 1.01717 1.02277 0.94544 1.23441 0.99260 0.94044 0.96306 1.22149 0.97441 0.83830 0.92343 1.46430 1.64586 1.02322 1.23740 1.19530 1.28721 0.86514 1.01577 0.89532 1.25683 1.02025 0.99484 0.99121 1.70047 1.46912 1.21203 1.22399 0.84976 0.77254 0.78861 0.78029 1.18661 1.22163 1.21684 1.22675 0.95208 0.93509 0.87843 0.91449 0.89338 0.90485 0.80829 0.80155 0.79525 0.75101 0.92881 0.90258 0.91113 0.88170 0.97934 0.94335 0.94377 0.91534 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 8.76 71.24 0.62 -1.81 16 2 C -0.09 -1.97 5.93 -19.52 -0.12 -2.09 16 3 C -0.09 -1.26 9.83 22.45 0.22 -1.04 16 4 C -0.13 -1.60 10.11 22.44 0.23 -1.37 16 5 C 0.08 1.37 11.18 84.83 0.95 2.32 16 6 N -0.48 -12.39 9.56 -184.90 -1.77 -14.16 16 7 C 0.04 1.17 6.75 41.90 0.28 1.45 16 8 C 0.56 18.47 7.72 86.88 0.67 19.14 16 9 O -0.56 -20.35 12.96 -3.76 -0.05 -20.40 16 10 N -0.70 -22.03 5.07 -445.10 -2.25 -24.28 16 11 C 0.16 5.14 2.38 44.99 0.11 5.25 16 12 H 0.06 2.44 7.41 -2.39 -0.02 2.42 16 13 C -0.15 -3.86 9.31 71.98 0.67 -3.19 16 14 C -0.11 -4.14 3.47 -10.13 -0.04 -4.18 16 15 C 0.17 8.47 7.08 86.44 0.61 9.08 16 16 N -0.64 -34.33 3.70 -716.15 -2.65 -36.99 16 17 C -0.24 -13.62 10.70 84.03 0.90 -12.72 16 18 H 0.09 4.75 7.83 -2.91 -0.02 4.72 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 20 N -0.96 -60.11 11.39 21.65 0.25 -59.86 16 21 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 C 0.13 5.34 7.64 86.49 0.66 6.00 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 28 H 0.08 2.05 5.82 -2.39 -0.01 2.04 16 29 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.41 12.39 7.95 -92.71 -0.74 11.65 16 33 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.08 1.90 7.52 -2.39 -0.02 1.89 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.00 0.15 7.99 -2.38 -0.02 0.14 16 38 H 0.04 2.17 7.16 -2.38 -0.02 2.16 16 39 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -76.28 340.94 2.09 -74.19 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.30 Total: 19.35 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.24 Total: 13.16 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -6.43 Total: -135.29 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.05 Total: -20.40 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -76.28 2.09 -74.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969451594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.581 kcal (2) G-P(sol) polarization free energy of solvation -76.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds