Wall clock time and date at job start Tue Mar 31 2020 02:46:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38225 * 120.42404 * 2 1
4 4 N 1.31853 * 120.76684 * 180.02562 * 3 2 1
5 5 C 1.31889 * 121.72339 * 359.69793 * 4 3 2
6 6 C 1.38184 * 120.76432 * 0.59238 * 5 4 3
7 7 C 1.50701 * 120.41944 * 179.70343 * 6 5 4
8 8 C 1.50694 * 109.46754 * 269.72092 * 7 6 5
9 9 O 1.21283 * 120.00576 * 359.97438 * 8 7 6
10 10 N 1.34779 * 120.00200 * 179.97438 * 8 7 6
11 11 C 1.47434 * 125.64516 * 0.02562 * 10 8 7
12 12 C 1.54904 * 104.83221 * 155.82549 * 11 10 8
13 13 C 1.55160 * 101.58416 * 37.00719 * 12 11 10
14 14 H 1.09000 * 110.71813 * 83.04135 * 13 12 11
15 15 N 1.46496 * 110.71990 * 206.13427 * 13 12 11
16 16 C 1.36939 * 120.00077 * 273.54634 * 15 13 12
17 17 H 1.07997 * 119.99728 * 359.72656 * 16 15 13
18 18 C 1.38815 * 119.99845 * 180.02562 * 16 15 13
19 19 N 1.31619 * 119.99884 * 359.72042 * 18 16 15
20 20 Si 1.86798 * 119.99660 * 179.72678 * 18 16 15
21 21 H 1.48498 * 109.47416 * 59.99578 * 20 18 16
22 22 H 1.48508 * 109.46609 * 179.97438 * 20 18 16
23 23 H 1.48503 * 109.46903 * 299.99163 * 20 18 16
24 24 C 1.47023 * 125.65215 * 179.97438 * 10 8 7
25 25 C 1.38634 * 120.41585 * 180.02562 * 2 1 3
26 26 H 1.08995 * 109.47194 * 269.98316 * 1 2 3
27 27 H 1.09007 * 109.46773 * 29.98149 * 1 2 3
28 28 H 1.08993 * 109.47354 * 149.97532 * 1 2 3
29 29 H 1.08003 * 119.61486 * 0.04146 * 3 2 1
30 30 H 1.08000 * 119.61614 * 180.31234 * 5 4 3
31 31 H 1.08997 * 109.47529 * 149.71727 * 7 6 5
32 32 H 1.09001 * 109.46810 * 29.71563 * 7 6 5
33 33 H 1.08995 * 110.36490 * 36.98311 * 11 10 8
34 34 H 1.09000 * 110.46055 * 274.70996 * 11 10 8
35 35 H 1.09008 * 111.00525 * 278.93707 * 12 11 10
36 36 H 1.08994 * 111.04107 * 155.09646 * 12 11 10
37 37 H 0.97004 * 120.00009 * 93.55251 * 15 13 12
38 38 H 0.97000 * 119.99517 * 180.02562 * 19 18 16
39 39 H 1.08998 * 109.88202 * 61.68870 * 24 10 8
40 40 H 1.09004 * 109.88287 * 300.52275 * 24 10 8
41 41 H 1.07995 * 120.79213 * 359.95539 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2070 1.1919 0.0000
4 7 3.5255 1.1998 -0.0005
5 6 4.2257 0.0822 0.0049
6 6 3.5947 -1.1472 -0.0010
7 6 4.4025 -2.4195 -0.0015
8 6 4.6713 -2.8432 -1.4224
9 8 4.2482 -2.1779 -2.3440
10 7 5.3819 -3.9615 -1.6693
11 6 5.9525 -4.8597 -0.6488
12 6 6.0956 -6.2281 -1.3604
13 6 6.5117 -5.7936 -2.7906
14 1 7.5844 -5.6064 -2.8399
15 7 6.1182 -6.8049 -3.7747
16 6 6.9491 -7.8601 -4.0418
17 1 7.8965 -7.9443 -3.5303
18 6 6.5764 -8.8181 -4.9747
19 7 5.4219 -8.7152 -5.5984
20 14 7.7133 -10.2533 -5.3447
21 1 7.9461 -11.0334 -4.1028
22 1 7.0881 -11.1287 -6.3687
23 1 9.0089 -9.7392 -5.8567
24 6 5.7156 -4.4883 -3.0007
25 6 2.2089 -1.1955 -0.0005
26 1 -0.3633 -0.0003 1.0276
27 1 -0.3633 0.8902 -0.5136
28 1 -0.3634 -0.8897 -0.5142
29 1 1.6676 2.1276 0.0007
30 1 5.3047 0.1283 0.0094
31 1 3.8462 -3.2033 0.5124
32 1 5.3488 -2.2492 0.5120
33 1 5.2774 -4.9436 0.2028
34 1 6.9278 -4.4970 -0.3244
35 1 5.1453 -6.7620 -1.3753
36 1 6.8735 -6.8323 -0.8938
37 1 5.2690 -6.7271 -4.2371
38 1 5.1613 -9.3848 -6.2500
39 1 6.3250 -3.7656 -3.5432
40 1 4.8015 -4.6970 -3.5566
41 1 1.6887 -2.1420 -0.0002
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000969474185.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:46:40
Heat of formation + Delta-G solvation = 9.016121 kcal
Electronic energy + Delta-G solvation = -22078.463413 eV
Core-core repulsion = 18765.302650 eV
Total energy + Delta-G solvation = -3313.160763 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.64035 -39.59519 -37.35203 -34.17662 -33.79050 -33.68190 -31.56902 -29.59928
-28.87816 -27.52881 -27.12757 -23.92103 -23.29586 -22.82368 -21.56179 -20.07973
-19.06357 -17.43410 -17.13429 -17.02209 -16.87963 -15.91378 -15.34988 -14.74678
-14.50152 -14.30166 -14.04303 -13.57257 -13.40030 -13.30789 -13.20192 -12.96328
-12.85255 -12.65688 -12.49010 -12.31702 -11.84084 -11.68489 -11.59967 -11.20396
-10.86818 -10.73873 -10.39656 -10.14425 -9.97496 -9.78912 -9.62276 -9.58189
-8.99999 -8.94283 -8.45607 -7.08335 -5.85275 -3.16271 0.92702 1.14055
2.71079 3.08429 3.38980 3.43709 3.44869 3.67096 4.22465 4.47242
4.51479 4.53402 4.63413 4.79406 4.81983 4.90737 4.98930 5.09389
5.24944 5.26768 5.30517 5.32540 5.48527 5.51391 5.54588 5.60468
5.71967 5.75852 5.91520 6.02209 6.08440 6.10102 6.20895 6.32960
6.51338 6.54878 6.57061 6.86063 7.61282 7.67093 7.83037 8.26248
8.32202 9.43399 9.97511 10.32035 11.36851
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.036300 B = 0.002748 C = 0.002671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 771.169507 B =10185.256887 C =10480.147424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.138 4.138
3 C 0.093 3.907
4 N -0.481 5.481
5 C 0.106 3.894
6 C -0.109 4.109
7 C -0.094 4.094
8 C 0.525 3.475
9 O -0.538 6.538
10 N -0.613 5.613
11 C 0.097 3.903
12 C -0.155 4.155
13 C 0.172 3.828
14 H 0.064 0.936
15 N -0.716 5.716
16 C -0.246 4.246
17 H 0.072 0.928
18 C -0.010 4.010
19 N -0.930 5.930
20 Si 0.910 3.090
21 H -0.285 1.285
22 H -0.291 1.291
23 H -0.285 1.285
24 C 0.101 3.899
25 C -0.063 4.063
26 H 0.072 0.928
27 H 0.070 0.930
28 H 0.069 0.931
29 H 0.153 0.847
30 H 0.152 0.848
31 H 0.104 0.896
32 H 0.105 0.895
33 H 0.069 0.931
34 H 0.067 0.933
35 H 0.075 0.925
36 H 0.076 0.924
37 H 0.386 0.614
38 H 0.257 0.743
39 H 0.065 0.935
40 H 0.070 0.930
41 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.521 14.730 16.192 22.575
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.139 4.139
3 C -0.064 4.064
4 N -0.189 5.189
5 C -0.051 4.051
6 C -0.111 4.111
7 C -0.134 4.134
8 C 0.313 3.687
9 O -0.416 6.416
10 N -0.347 5.347
11 C -0.026 4.026
12 C -0.196 4.196
13 C 0.060 3.940
14 H 0.082 0.918
15 N -0.357 5.357
16 C -0.377 4.377
17 H 0.090 0.910
18 C -0.206 4.206
19 N -0.578 5.578
20 Si 0.740 3.260
21 H -0.212 1.212
22 H -0.216 1.216
23 H -0.211 1.211
24 C -0.022 4.022
25 C -0.089 4.089
26 H 0.090 0.910
27 H 0.089 0.911
28 H 0.088 0.912
29 H 0.170 0.830
30 H 0.169 0.831
31 H 0.122 0.878
32 H 0.124 0.876
33 H 0.087 0.913
34 H 0.085 0.915
35 H 0.094 0.906
36 H 0.095 0.905
37 H 0.221 0.779
38 H 0.067 0.933
39 H 0.084 0.916
40 H 0.089 0.911
41 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -5.213 15.822 15.638 22.849
hybrid contribution -0.085 -1.781 -0.386 1.824
sum -5.298 14.041 15.253 21.397
Atomic orbital electron populations
1.20716 0.90198 1.03298 1.02451 1.20896 0.97579 0.94065 1.01404
1.22630 0.90001 0.97383 0.96395 1.67662 1.08365 1.31048 1.11783
1.22553 1.00130 0.87084 0.95334 1.20315 0.94307 0.95487 1.00975
1.20573 1.01678 0.95810 0.95378 1.20051 0.78011 0.79730 0.90894
1.90735 1.51201 1.53229 1.46387 1.48501 1.53016 1.24166 1.09024
1.22428 0.97930 0.90977 0.91303 1.23567 1.02891 0.94219 0.98944
1.21186 0.96596 0.87252 0.88971 0.91802 1.42363 1.22658 1.24813
1.45851 1.19162 0.99665 1.00221 1.18670 0.90993 1.24783 0.97318
0.99347 0.99189 1.69657 1.21370 1.36766 1.29962 0.86240 0.79876
0.82189 0.77672 1.21166 1.21648 1.21148 1.22286 1.00229 0.96157
0.83495 1.21343 0.93290 0.98345 0.95904 0.90960 0.91149 0.91220
0.83005 0.83059 0.87796 0.87645 0.91289 0.91472 0.90620 0.90490
0.77949 0.93268 0.91645 0.91141 0.85009
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.76 10.04 36.01 0.36 -0.40 16
2 C -0.14 -1.38 5.90 -104.48 -0.62 -2.00 16
3 C 0.09 1.00 10.86 -17.55 -0.19 0.81 16
4 N -0.48 -6.15 10.36 -13.25 -0.14 -6.29 16
5 C 0.11 1.27 10.86 -17.55 -0.19 1.08 16
6 C -0.11 -1.24 4.39 -104.48 -0.46 -1.70 16
7 C -0.09 -0.94 4.86 -29.04 -0.14 -1.09 16
8 C 0.53 7.73 7.84 -10.99 -0.09 7.64 16
9 O -0.54 -10.24 16.36 5.56 0.09 -10.14 16
10 N -0.61 -8.97 3.33 -170.52 -0.57 -9.54 16
11 C 0.10 1.14 6.69 -2.53 -0.02 1.13 16
12 C -0.15 -2.38 6.77 -24.58 -0.17 -2.55 16
13 C 0.17 3.19 3.59 -66.09 -0.24 2.95 16
14 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16
15 N -0.72 -17.22 5.25 -51.65 -0.27 -17.49 16
16 C -0.25 -6.54 9.98 -15.06 -0.15 -6.69 16
17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16
18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16
19 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16
20 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16
21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16
22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
24 C 0.10 1.77 6.62 -3.06 -0.02 1.75 16
25 C -0.06 -0.68 9.55 -39.27 -0.37 -1.06 16
26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
27 H 0.07 0.42 8.09 -51.92 -0.42 0.00 16
28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16
29 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16
30 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16
31 H 0.10 0.83 7.80 -51.93 -0.41 0.43 16
32 H 0.11 0.80 8.09 -51.93 -0.42 0.38 16
33 H 0.07 0.64 7.47 -51.93 -0.39 0.26 16
34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
35 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16
36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
37 H 0.39 10.04 7.51 -40.82 -0.31 9.73 16
38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
40 H 0.07 1.37 7.69 -51.93 -0.40 0.97 16
41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16
LS Contribution 346.57 15.07 5.22 5.22
Total: -1.00 -33.28 346.57 -8.45 -41.74
By element:
Atomic # 1 Polarization: 13.19 SS G_CDS: -6.11 Total: 7.08 kcal
Atomic # 6 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.49 kcal
Atomic # 7 Polarization: -59.87 SS G_CDS: -0.25 Total: -60.12 kcal
Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.14 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -33.28 -8.45 -41.74 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969474185.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.752 kcal
(2) G-P(sol) polarization free energy of solvation -33.281 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds