Wall clock time and date at job start Tue Mar 31 2020 02:46:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38225 * 120.42404 * 2 1
4 4 N 1.31853 * 120.76684 * 180.02562 * 3 2 1
5 5 C 1.31889 * 121.72339 * 359.69793 * 4 3 2
6 6 C 1.38184 * 120.76432 * 0.59238 * 5 4 3
7 7 C 1.50701 * 120.41944 * 179.70343 * 6 5 4
8 8 C 1.50694 * 109.46754 * 269.72092 * 7 6 5
9 9 O 1.21283 * 120.00576 * 359.97438 * 8 7 6
10 10 N 1.34779 * 120.00200 * 179.97438 * 8 7 6
11 11 C 1.47434 * 125.64516 * 0.02562 * 10 8 7
12 12 C 1.54904 * 104.83221 * 155.82549 * 11 10 8
13 13 C 1.55160 * 101.58416 * 37.00719 * 12 11 10
14 14 H 1.09000 * 110.71813 * 83.04135 * 13 12 11
15 15 N 1.46496 * 110.71990 * 206.13427 * 13 12 11
16 16 C 1.36939 * 120.00077 * 273.54634 * 15 13 12
17 17 H 1.07997 * 119.99728 * 359.72656 * 16 15 13
18 18 C 1.38815 * 119.99845 * 180.02562 * 16 15 13
19 19 N 1.31619 * 119.99884 * 359.72042 * 18 16 15
20 20 Si 1.86798 * 119.99660 * 179.72678 * 18 16 15
21 21 H 1.48498 * 109.47416 * 59.99578 * 20 18 16
22 22 H 1.48508 * 109.46609 * 179.97438 * 20 18 16
23 23 H 1.48503 * 109.46903 * 299.99163 * 20 18 16
24 24 C 1.47023 * 125.65215 * 179.97438 * 10 8 7
25 25 C 1.38634 * 120.41585 * 180.02562 * 2 1 3
26 26 H 1.08995 * 109.47194 * 269.98316 * 1 2 3
27 27 H 1.09007 * 109.46773 * 29.98149 * 1 2 3
28 28 H 1.08993 * 109.47354 * 149.97532 * 1 2 3
29 29 H 1.08003 * 119.61486 * 0.04146 * 3 2 1
30 30 H 1.08000 * 119.61614 * 180.31234 * 5 4 3
31 31 H 1.08997 * 109.47529 * 149.71727 * 7 6 5
32 32 H 1.09001 * 109.46810 * 29.71563 * 7 6 5
33 33 H 1.08995 * 110.36490 * 36.98311 * 11 10 8
34 34 H 1.09000 * 110.46055 * 274.70996 * 11 10 8
35 35 H 1.09008 * 111.00525 * 278.93707 * 12 11 10
36 36 H 1.08994 * 111.04107 * 155.09646 * 12 11 10
37 37 H 0.97004 * 120.00009 * 93.55251 * 15 13 12
38 38 H 0.97000 * 119.99517 * 180.02562 * 19 18 16
39 39 H 1.08998 * 109.88202 * 61.68870 * 24 10 8
40 40 H 1.09004 * 109.88287 * 300.52275 * 24 10 8
41 41 H 1.07995 * 120.79213 * 359.95539 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2070 1.1919 0.0000
4 7 3.5255 1.1998 -0.0005
5 6 4.2257 0.0822 0.0049
6 6 3.5947 -1.1472 -0.0010
7 6 4.4025 -2.4195 -0.0015
8 6 4.6713 -2.8432 -1.4224
9 8 4.2482 -2.1779 -2.3440
10 7 5.3819 -3.9615 -1.6693
11 6 5.9525 -4.8597 -0.6488
12 6 6.0956 -6.2281 -1.3604
13 6 6.5117 -5.7936 -2.7906
14 1 7.5844 -5.6064 -2.8399
15 7 6.1182 -6.8049 -3.7747
16 6 6.9491 -7.8601 -4.0418
17 1 7.8965 -7.9443 -3.5303
18 6 6.5764 -8.8181 -4.9747
19 7 5.4219 -8.7152 -5.5984
20 14 7.7133 -10.2533 -5.3447
21 1 7.9461 -11.0334 -4.1028
22 1 7.0881 -11.1287 -6.3687
23 1 9.0089 -9.7392 -5.8567
24 6 5.7156 -4.4883 -3.0007
25 6 2.2089 -1.1955 -0.0005
26 1 -0.3633 -0.0003 1.0276
27 1 -0.3633 0.8902 -0.5136
28 1 -0.3634 -0.8897 -0.5142
29 1 1.6676 2.1276 0.0007
30 1 5.3047 0.1283 0.0094
31 1 3.8462 -3.2033 0.5124
32 1 5.3488 -2.2492 0.5120
33 1 5.2774 -4.9436 0.2028
34 1 6.9278 -4.4970 -0.3244
35 1 5.1453 -6.7620 -1.3753
36 1 6.8735 -6.8323 -0.8938
37 1 5.2690 -6.7271 -4.2371
38 1 5.1613 -9.3848 -6.2500
39 1 6.3250 -3.7656 -3.5432
40 1 4.8015 -4.6970 -3.5566
41 1 1.6887 -2.1420 -0.0002
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000969474185.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:46:39
Heat of formation + Delta-G solvation = -13.075278 kcal
Electronic energy + Delta-G solvation = -22079.421368 eV
Core-core repulsion = 18765.302650 eV
Total energy + Delta-G solvation = -3314.118718 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.54914 -40.69330 -38.68508 -35.91563 -34.61276 -34.48942 -33.29165 -31.04519
-30.02292 -28.43974 -28.14249 -25.64300 -24.38143 -23.92994 -22.42664 -21.53168
-20.16506 -19.32846 -18.17770 -17.91190 -17.73821 -17.22709 -16.60288 -16.32448
-15.55917 -15.43427 -15.20792 -15.03411 -14.66357 -14.34714 -14.12140 -13.98191
-13.80276 -13.54975 -13.38072 -13.27728 -13.13417 -13.00371 -12.94207 -12.64221
-12.36718 -12.31222 -12.13163 -11.75597 -11.67626 -11.10020 -10.92599 -10.51717
-10.41606 -9.73493 -9.68243 -9.04667 -7.95049 -5.25494 0.12145 0.33049
1.49213 1.52166 1.58060 1.59873 1.96222 2.57206 2.83387 3.36698
3.46075 3.59679 3.72047 3.77963 3.82993 3.94378 4.04817 4.06003
4.10455 4.25375 4.28909 4.42801 4.44940 4.53557 4.58640 4.71040
4.78592 4.82478 4.87775 4.91301 5.02247 5.18281 5.20356 5.25328
5.28255 5.33703 5.46143 5.54196 5.79421 6.25408 6.54884 7.01413
7.12462 7.31630 8.03942 8.27176 9.28431
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.036300 B = 0.002748 C = 0.002671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 771.169507 B =10185.256887 C =10480.147424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.140 4.140
3 C 0.079 3.921
4 N -0.509 5.509
5 C 0.087 3.913
6 C -0.119 4.119
7 C -0.081 4.081
8 C 0.522 3.478
9 O -0.590 6.590
10 N -0.613 5.613
11 C 0.104 3.896
12 C -0.146 4.146
13 C 0.164 3.836
14 H 0.069 0.931
15 N -0.733 5.733
16 C -0.239 4.239
17 H 0.084 0.916
18 C -0.077 4.077
19 N -0.973 5.973
20 Si 0.975 3.025
21 H -0.273 1.273
22 H -0.300 1.300
23 H -0.278 1.278
24 C 0.110 3.890
25 C -0.079 4.079
26 H 0.089 0.911
27 H 0.080 0.920
28 H 0.069 0.931
29 H 0.174 0.826
30 H 0.163 0.837
31 H 0.133 0.867
32 H 0.139 0.861
33 H 0.107 0.893
34 H 0.098 0.902
35 H 0.055 0.945
36 H 0.090 0.910
37 H 0.371 0.629
38 H 0.250 0.750
39 H 0.058 0.942
40 H 0.040 0.960
41 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.891 14.883 18.957 24.593
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.142 4.142
3 C -0.077 4.077
4 N -0.217 5.217
5 C -0.070 4.070
6 C -0.122 4.122
7 C -0.121 4.121
8 C 0.313 3.687
9 O -0.471 6.471
10 N -0.346 5.346
11 C -0.017 4.017
12 C -0.187 4.187
13 C 0.055 3.945
14 H 0.087 0.913
15 N -0.373 5.373
16 C -0.371 4.371
17 H 0.102 0.898
18 C -0.269 4.269
19 N -0.623 5.623
20 Si 0.804 3.196
21 H -0.199 1.199
22 H -0.227 1.227
23 H -0.204 1.204
24 C -0.014 4.014
25 C -0.104 4.104
26 H 0.107 0.893
27 H 0.099 0.901
28 H 0.088 0.912
29 H 0.191 0.809
30 H 0.180 0.820
31 H 0.151 0.849
32 H 0.157 0.843
33 H 0.126 0.874
34 H 0.116 0.884
35 H 0.074 0.926
36 H 0.108 0.892
37 H 0.203 0.797
38 H 0.059 0.941
39 H 0.076 0.924
40 H 0.059 0.941
41 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -4.540 15.993 18.486 24.862
hybrid contribution -0.304 -1.719 -1.218 2.129
sum -4.843 14.274 17.267 22.921
Atomic orbital electron populations
1.20774 0.88079 1.03867 1.03696 1.21247 0.99187 0.93605 1.00167
1.23076 0.89728 0.98762 0.96174 1.67652 1.09462 1.31795 1.12746
1.22838 1.00881 0.87371 0.95869 1.20500 0.94790 0.95850 1.01027
1.20622 1.03578 0.95821 0.92052 1.20937 0.76609 0.78778 0.92424
1.90716 1.53111 1.54794 1.48469 1.48583 1.53117 1.24660 1.08257
1.22614 1.00456 0.87782 0.90876 1.23366 1.02115 0.96520 0.96693
1.21406 0.96871 0.86535 0.89721 0.91289 1.42563 1.21859 1.25656
1.47189 1.19604 0.99866 1.00172 1.17418 0.89772 1.25615 0.98916
1.02427 0.99973 1.69831 1.23502 1.37751 1.31218 0.85186 0.77974
0.79011 0.77420 1.19928 1.22698 1.20393 1.21940 0.98537 0.95690
0.85267 1.21680 0.93542 0.99303 0.95910 0.89252 0.90072 0.91166
0.80895 0.81988 0.84916 0.84324 0.87440 0.88382 0.92602 0.89181
0.79736 0.94084 0.92401 0.94111 0.83731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.28 10.04 71.24 0.72 -0.57 16
2 C -0.14 -2.63 5.90 -19.77 -0.12 -2.74 16
3 C 0.08 1.64 10.86 84.69 0.92 2.56 16
4 N -0.51 -12.72 10.36 -195.84 -2.03 -14.75 16
5 C 0.09 2.00 10.86 84.67 0.92 2.92 16
6 C -0.12 -2.52 4.39 -19.77 -0.09 -2.61 16
7 C -0.08 -1.36 4.86 29.10 0.14 -1.21 16
8 C 0.52 14.48 7.84 87.65 0.69 15.16 16
9 O -0.59 -22.54 16.36 -3.04 -0.05 -22.59 16
10 N -0.61 -16.76 3.33 -811.78 -2.70 -19.46 16
11 C 0.10 2.03 6.69 86.85 0.58 2.61 16
12 C -0.15 -4.16 6.77 31.99 0.22 -3.94 16
13 C 0.16 6.00 3.59 46.18 0.17 6.17 16
14 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16
15 N -0.73 -35.81 5.25 -317.32 -1.67 -37.47 16
16 C -0.24 -12.69 9.98 84.03 0.84 -11.86 16
17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16
18 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16
19 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16
20 Si 0.98 44.93 29.55 68.60 2.03 46.96 16
21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
22 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16
23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16
24 C 0.11 3.88 6.62 86.73 0.57 4.45 16
25 C -0.08 -1.59 9.55 22.47 0.21 -1.37 16
26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16
27 H 0.08 0.80 8.09 -2.38 -0.02 0.78 16
28 H 0.07 0.84 8.09 -2.39 -0.02 0.83 16
29 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16
30 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16
31 H 0.13 1.49 7.80 -2.39 -0.02 1.48 16
32 H 0.14 1.43 8.09 -2.39 -0.02 1.41 16
33 H 0.11 1.38 7.47 -2.39 -0.02 1.36 16
34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16
35 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16
36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16
37 H 0.37 20.09 7.51 -92.71 -0.70 19.39 16
38 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16
39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
40 H 0.04 1.67 7.69 -2.38 -0.02 1.65 16
41 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16
Total: -1.00 -75.35 346.57 2.43 -72.92
By element:
Atomic # 1 Polarization: 27.30 SS G_CDS: 0.33 Total: 27.63 kcal
Atomic # 6 Polarization: -0.54 SS G_CDS: 6.24 Total: 5.70 kcal
Atomic # 7 Polarization: -124.52 SS G_CDS: -6.11 Total: -130.63 kcal
Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal
Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal
Total: -75.35 2.43 -72.92 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969474185.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.845 kcal
(2) G-P(sol) polarization free energy of solvation -75.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.509 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.921 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds