Wall clock time and date at job start Tue Mar 31 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31879 * 119.61933 * 2 1 4 4 C 1.31860 * 121.72732 * 180.31473 * 3 2 1 5 5 C 1.38229 * 120.75957 * 359.70108 * 4 3 2 6 6 C 1.38630 * 119.16187 * 0.02562 * 5 4 3 7 7 C 1.38186 * 119.61381 * 179.73613 * 2 1 3 8 8 C 1.50695 * 120.41858 * 359.97272 * 7 2 1 9 9 C 1.50702 * 109.47398 * 84.72862 * 8 7 2 10 10 O 1.21286 * 119.99556 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.47418 * 125.65127 * 0.02562 * 11 9 8 13 13 C 1.54911 * 104.83317 * 155.83655 * 12 11 9 14 14 C 1.55161 * 101.58127 * 37.00567 * 13 12 11 15 15 H 1.09002 * 110.71380 * 83.04298 * 14 13 12 16 16 N 1.46496 * 110.71971 * 206.13307 * 14 13 12 17 17 C 1.36934 * 120.00548 * 273.54755 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47022 * 125.64177 * 179.97438 * 11 9 8 26 26 H 1.09002 * 109.47192 * 270.26943 * 1 2 3 27 27 H 1.09003 * 109.47539 * 30.26726 * 1 2 3 28 28 H 1.09001 * 109.47489 * 150.26524 * 1 2 3 29 29 H 1.07996 * 119.62296 * 179.73028 * 4 3 2 30 30 H 1.08005 * 120.41665 * 180.02562 * 5 4 3 31 31 H 1.08007 * 120.78511 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47194 * 324.72330 * 8 7 2 33 33 H 1.09006 * 109.46874 * 204.72567 * 8 7 2 34 34 H 1.09000 * 110.36948 * 36.99512 * 12 11 9 35 35 H 1.09002 * 110.36710 * 274.66989 * 12 11 9 36 36 H 1.09002 * 111.00460 * 278.93554 * 13 12 11 37 37 H 1.08999 * 111.00878 * 155.08098 * 13 12 11 38 38 H 0.96999 * 119.99694 * 93.55279 * 16 14 13 39 39 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.88200 * 61.68246 * 25 11 9 41 41 H 1.09000 * 109.88598 * 300.51169 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4764 1.1950 -0.0062 5 6 4.2266 0.0340 -0.0067 6 6 3.5764 -1.1904 -0.0012 7 6 2.1898 -1.2013 0.0055 8 6 1.4370 -2.5068 0.0122 9 6 1.0724 -2.8837 -1.4007 10 8 1.3920 -2.1628 -2.3222 11 7 0.3913 -4.0217 -1.6401 12 6 -0.0583 -4.9851 -0.6188 13 6 -1.2590 -5.7186 -1.2668 14 6 -0.7975 -5.8268 -2.7442 15 1 -0.1419 -6.6867 -2.8814 16 7 -1.9514 -5.9086 -3.6430 17 6 -2.5228 -7.1229 -3.9150 18 1 -2.1229 -8.0204 -3.4665 19 6 -3.6158 -7.2005 -4.7670 20 7 -4.1654 -8.3677 -5.0280 21 14 -4.3079 -5.6481 -5.5421 22 1 -5.3533 -5.0761 -4.6561 23 1 -3.2170 -4.6571 -5.7243 24 1 -4.9034 -5.9771 -6.8621 25 6 -0.0273 -4.5074 -2.9631 26 1 -0.3634 0.0048 1.0277 27 1 -0.3634 0.8876 -0.5180 28 1 -0.3634 -0.8923 -0.5097 29 1 3.9753 2.1528 -0.0104 30 1 5.3056 0.0802 -0.0113 31 1 4.1367 -2.1138 -0.0019 32 1 0.5290 -2.3996 0.6055 33 1 2.0645 -3.2858 0.4456 34 1 -0.3754 -4.4615 0.2831 35 1 0.7383 -5.6923 -0.3876 36 1 -2.1698 -5.1255 -1.1844 37 1 -1.3968 -6.7065 -0.8272 38 1 -2.3107 -5.1025 -4.0455 39 1 -4.9294 -8.4218 -5.6231 40 1 0.8488 -4.6887 -3.5858 41 1 -0.6774 -3.7733 -3.4390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969939784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:57 Heat of formation + Delta-G solvation = -6.805749 kcal Electronic energy + Delta-G solvation = -22517.131179 eV Core-core repulsion = 19203.284329 eV Total energy + Delta-G solvation = -3313.846850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65906 -40.67927 -38.73807 -36.02231 -34.80164 -33.90394 -33.53493 -31.38652 -30.26489 -29.13805 -28.01025 -25.40589 -24.21008 -23.53938 -22.75289 -21.68491 -20.27673 -19.72511 -18.18423 -17.93508 -17.33005 -17.31463 -16.54847 -16.33487 -15.85273 -15.57721 -15.43864 -15.00948 -14.70972 -14.43316 -14.12143 -14.02651 -13.86066 -13.47880 -13.41965 -13.34829 -13.20579 -13.10821 -13.01960 -12.71243 -12.33921 -12.25019 -12.18505 -11.82330 -11.66427 -11.10860 -10.98979 -10.62911 -10.39930 -9.72880 -9.69429 -9.34120 -8.03630 -5.37790 0.13496 0.36233 1.38258 1.38967 1.45989 1.58811 1.94323 2.46566 2.83115 3.26651 3.40128 3.53663 3.54584 3.63990 3.85387 3.87895 3.97414 4.05205 4.12105 4.24555 4.39230 4.46988 4.48052 4.53750 4.60570 4.66643 4.67601 4.69069 4.79770 4.87588 4.99644 5.12142 5.17372 5.24279 5.28676 5.30652 5.43472 5.76303 5.81320 6.20252 6.52534 7.04441 7.05806 7.11932 7.79981 7.97049 9.17251 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.003245 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.170009 B = 8627.101311 C = 8995.694980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.120 3.880 3 N -0.518 5.518 4 C 0.085 3.915 5 C -0.179 4.179 6 C -0.070 4.070 7 C -0.130 4.130 8 C -0.085 4.085 9 C 0.525 3.475 10 O -0.586 6.586 11 N -0.613 5.613 12 C 0.104 3.896 13 C -0.147 4.147 14 C 0.167 3.833 15 H 0.070 0.930 16 N -0.747 5.747 17 C -0.226 4.226 18 H 0.068 0.932 19 C -0.058 4.058 20 N -0.980 5.980 21 Si 0.946 3.054 22 H -0.278 1.278 23 H -0.260 1.260 24 H -0.297 1.297 25 C 0.108 3.892 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.177 0.823 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.363 0.637 39 H 0.258 0.742 40 H 0.063 0.937 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.169 14.738 17.235 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.017 4.017 3 N -0.228 5.228 4 C -0.072 4.072 5 C -0.198 4.198 6 C -0.096 4.096 7 C -0.133 4.133 8 C -0.124 4.124 9 C 0.316 3.684 10 O -0.466 6.466 11 N -0.347 5.347 12 C -0.018 4.018 13 C -0.188 4.188 14 C 0.058 3.942 15 H 0.088 0.912 16 N -0.390 5.390 17 C -0.357 4.357 18 H 0.086 0.914 19 C -0.250 4.250 20 N -0.630 5.630 21 Si 0.775 3.225 22 H -0.204 1.204 23 H -0.185 1.185 24 H -0.224 1.224 25 C -0.017 4.017 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.194 0.806 30 H 0.182 0.818 31 H 0.174 0.826 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.197 0.803 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.871 15.730 16.765 27.935 hybrid contribution -0.396 -0.205 -1.251 1.328 sum 15.475 15.525 15.514 26.855 Atomic orbital electron populations 1.20755 0.88592 1.02965 1.03870 1.21372 0.97601 0.88303 0.94439 1.67503 1.11468 1.29801 1.14036 1.23222 0.89076 1.00148 0.94748 1.22434 1.02909 0.92739 1.01730 1.21853 0.93431 0.99957 0.94330 1.20321 0.95041 0.95111 1.02781 1.20658 1.03531 0.95703 0.92527 1.20819 0.76708 0.78794 0.92125 1.90722 1.55865 1.52023 1.47988 1.48560 1.55104 1.22221 1.08775 1.22617 0.96604 0.91283 0.91274 1.23355 0.97737 1.01347 0.96339 1.21371 0.87873 0.94649 0.90300 0.91233 1.42739 1.35173 1.05204 1.55893 1.19001 1.08679 0.86351 1.21622 0.91446 1.25388 0.99395 0.99104 1.01132 1.69855 1.26349 1.24831 1.42003 0.85540 0.78797 0.80408 0.77796 1.20397 1.18457 1.22409 1.21967 0.98387 0.95685 0.85627 0.88123 0.91432 0.91425 0.80618 0.81826 0.82608 0.85244 0.84417 0.87286 0.88594 0.91700 0.89600 0.80336 0.93333 0.91910 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 9.39 71.23 0.67 -1.45 16 2 C 0.12 2.83 6.78 42.54 0.29 3.12 16 3 N -0.52 -12.89 10.27 -183.89 -1.89 -14.78 16 4 C 0.08 1.62 11.18 84.69 0.95 2.57 16 5 C -0.18 -2.82 10.11 22.36 0.23 -2.60 16 6 C -0.07 -1.20 9.84 22.47 0.22 -0.98 16 7 C -0.13 -2.63 4.39 -19.77 -0.09 -2.72 16 8 C -0.08 -1.33 4.17 29.10 0.12 -1.21 16 9 C 0.53 13.31 7.05 87.66 0.62 13.92 16 10 O -0.59 -20.68 16.36 -3.05 -0.05 -20.73 16 11 N -0.61 -15.09 3.33 -811.79 -2.70 -17.79 16 12 C 0.10 1.84 6.69 86.86 0.58 2.42 16 13 C -0.15 -3.91 6.77 31.99 0.22 -3.69 16 14 C 0.17 5.68 3.59 46.18 0.17 5.85 16 15 H 0.07 2.41 8.12 -2.39 -0.02 2.40 16 16 N -0.75 -33.12 5.05 -317.33 -1.60 -34.73 16 17 C -0.23 -12.22 10.46 84.03 0.88 -11.34 16 18 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 19 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 20 N -0.98 -61.36 13.97 21.65 0.30 -61.06 16 21 Si 0.95 45.15 27.74 68.60 1.90 47.05 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.26 -11.49 6.52 99.48 0.65 -10.84 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 C 0.11 3.38 6.61 86.73 0.57 3.95 16 26 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.41 6.14 -2.39 -0.01 1.40 16 29 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.13 1.45 6.73 -2.39 -0.02 1.43 16 33 H 0.14 1.24 8.06 -2.38 -0.02 1.22 16 34 H 0.11 1.22 7.48 -2.39 -0.02 1.20 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.36 16.04 5.37 -92.71 -0.50 15.54 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 40 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.05 1.72 7.69 -2.39 -0.02 1.70 16 Total: -1.00 -76.95 338.96 2.33 -74.62 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.48 Total: 22.44 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.89 Total: 4.96 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -5.89 Total: -128.35 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Total: -76.95 2.33 -74.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969939784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.815 kcal (2) G-P(sol) polarization free energy of solvation -76.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds