Wall clock time and date at job start Tue Mar 31 2020 02:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34656 * 125.80136 * 2 1 4 4 H 0.97002 * 124.85185 * 359.97438 * 3 2 1 5 5 C 1.36449 * 110.29717 * 180.02562 * 3 2 1 6 6 C 1.34484 * 108.85731 * 359.74985 * 5 3 2 7 7 C 1.36772 * 125.80191 * 180.02562 * 2 1 3 8 8 C 1.47265 * 126.94333 * 359.94688 * 7 2 1 9 9 O 1.21625 * 119.99528 * 359.97438 * 8 7 2 10 10 N 1.34771 * 119.99943 * 180.02562 * 8 7 2 11 11 C 1.46505 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47203 * 179.97438 * 11 10 8 13 13 H 1.09004 * 115.51602 * 330.41120 * 12 11 10 14 14 C 1.52997 * 117.44448 * 185.00000 * 12 11 10 15 15 H 1.08998 * 119.53736 * 4.10779 * 14 12 11 16 16 C 1.54384 * 118.12809 * 160.81017 * 14 12 11 17 17 N 1.48147 * 104.62345 * 87.18511 * 16 14 12 18 18 C 1.36937 * 127.83809 * 140.39531 * 17 16 14 19 19 H 1.08002 * 119.99238 * 195.59853 * 18 17 16 20 20 C 1.38810 * 119.99994 * 15.59663 * 18 17 16 21 21 N 1.31620 * 119.99862 * 9.10173 * 20 18 17 22 22 Si 1.86797 * 119.99935 * 189.09597 * 20 18 17 23 23 H 1.48500 * 109.47270 * 60.00035 * 22 20 18 24 24 H 1.48492 * 109.47152 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47148 * 300.00123 * 22 20 18 26 26 C 1.48148 * 104.31933 * 320.41763 * 17 16 14 27 27 C 1.52995 * 117.44490 * 115.75519 * 12 11 10 28 28 H 1.09002 * 119.54474 * 355.88287 * 27 12 11 29 29 H 1.09002 * 109.47764 * 269.97851 * 1 2 3 30 30 H 1.09001 * 109.47314 * 29.97535 * 1 2 3 31 31 H 1.09004 * 109.47081 * 149.97366 * 1 2 3 32 32 H 1.08007 * 125.56947 * 180.02562 * 5 3 2 33 33 H 1.07996 * 126.83299 * 180.24834 * 6 5 3 34 34 H 0.96996 * 120.00130 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.47313 * 59.99447 * 11 10 8 36 36 H 1.09006 * 109.46783 * 299.99717 * 11 10 8 37 37 H 1.09001 * 110.40814 * 205.97275 * 16 14 12 38 38 H 1.09010 * 110.40399 * 328.39988 * 16 14 12 39 39 H 0.96999 * 119.99692 * 180.02562 * 21 20 18 40 40 H 1.09000 * 110.41069 * 280.79665 * 26 17 16 41 41 H 1.09009 * 110.50408 * 158.41480 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2946 1.0921 0.0000 4 1 1.9733 2.0074 -0.0004 5 6 3.6095 0.7274 -0.0006 6 6 3.6881 -0.6151 0.0046 7 6 2.3070 -1.1093 -0.0005 8 6 1.8702 -2.5157 0.0000 9 8 0.6839 -2.7839 0.0014 10 7 2.7849 -3.5054 -0.0001 11 6 2.3504 -4.9045 -0.0002 12 6 3.5766 -5.8194 -0.0009 13 1 4.4643 -5.4145 -0.4869 14 6 3.3329 -7.3252 -0.1195 15 1 2.3182 -7.6954 -0.2663 16 6 4.5077 -8.2194 -0.5706 17 7 5.2278 -8.5506 0.6810 18 6 5.7905 -9.7478 1.0348 19 1 6.0624 -9.9336 2.0634 20 6 6.0113 -10.7225 0.0714 21 7 5.8495 -10.4366 -1.2031 22 14 6.5384 -12.4397 0.5839 23 1 5.5006 -13.0340 1.4641 24 1 6.7078 -13.2866 -0.6240 25 1 7.8265 -12.3635 1.3190 26 6 5.2004 -7.2928 1.4633 27 6 3.7895 -6.7142 1.2217 28 1 3.1151 -6.6294 2.0738 29 1 -0.3635 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 4.4497 1.4060 -0.0003 33 1 4.5889 -1.2109 0.0093 34 1 3.7310 -3.2914 -0.0008 35 1 1.7518 -5.0990 -0.8901 36 1 1.7519 -5.0991 0.8898 37 1 4.1343 -9.1266 -1.0457 38 1 5.1608 -7.6738 -1.2518 39 1 6.0035 -11.1178 -1.8763 40 1 5.9616 -6.6024 1.0998 41 1 5.3502 -7.4989 2.5232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977985169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:49 Heat of formation + Delta-G solvation = 62.104919 kcal Electronic energy + Delta-G solvation = -21929.594919 eV Core-core repulsion = 18618.736259 eV Total energy + Delta-G solvation = -3310.858660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43107 -39.27927 -38.43994 -34.83366 -33.28173 -31.75385 -31.42324 -30.62507 -27.55683 -27.07271 -26.34816 -24.81891 -22.37860 -21.16477 -20.74273 -20.26159 -19.26599 -19.03931 -17.88514 -16.79368 -16.14900 -15.72878 -15.36991 -14.75965 -14.55926 -14.23369 -14.00496 -13.63651 -13.40731 -13.24341 -12.95400 -12.89488 -12.76724 -12.67034 -12.55428 -11.78030 -11.76393 -11.21001 -11.05477 -10.79247 -10.59978 -10.24967 -10.12911 -9.85125 -9.69973 -9.31003 -9.11280 -9.04200 -8.79155 -8.59859 -8.36820 -6.83406 -5.76934 -3.11070 1.62706 2.21500 2.85902 3.40422 3.45244 3.46572 3.47513 3.58177 4.22928 4.49311 4.59294 4.75250 4.95824 4.96943 5.07313 5.30777 5.37709 5.41024 5.46007 5.48957 5.60303 5.64431 5.74009 5.86392 5.95568 6.00451 6.02301 6.08960 6.28322 6.51054 6.54039 6.64124 6.70052 6.73007 6.79271 6.97505 7.17482 7.40187 7.56517 7.72896 7.74703 8.24334 8.43491 9.14002 9.76824 10.54430 11.37376 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042647 B = 0.002579 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.401768 B =10854.711186 C =11144.830326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.103 3.897 3 N -0.555 5.555 4 H 0.415 0.585 5 C -0.019 4.019 6 C -0.166 4.166 7 C -0.234 4.234 8 C 0.588 3.412 9 O -0.557 6.557 10 N -0.719 5.719 11 C 0.157 3.843 12 C -0.148 4.148 13 H 0.102 0.898 14 C -0.162 4.162 15 H 0.103 0.897 16 C 0.184 3.816 17 N -0.595 5.595 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.154 3.846 27 C -0.172 4.172 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.146 0.854 34 H 0.401 0.599 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.023 0.977 39 H 0.255 0.745 40 H 0.024 0.976 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 24.004 1.560 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.015 4.015 3 N -0.150 5.150 4 H 0.251 0.749 5 C -0.146 4.146 6 C -0.191 4.191 7 C -0.244 4.244 8 C 0.377 3.623 9 O -0.437 6.437 10 N -0.370 5.370 11 C 0.033 3.967 12 C -0.167 4.167 13 H 0.120 0.880 14 C -0.183 4.183 15 H 0.121 0.879 16 C 0.058 3.942 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.028 3.972 27 C -0.192 4.192 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.186 0.814 33 H 0.164 0.836 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.641 23.631 1.472 24.879 hybrid contribution 0.776 -0.284 0.243 0.861 sum -6.865 23.347 1.715 24.396 Atomic orbital electron populations 1.20575 0.87011 1.04178 1.03471 1.20351 0.93737 0.85655 1.01757 1.41599 1.06299 1.08358 1.58793 0.74887 1.21722 0.85625 0.96494 1.10807 1.22089 0.95912 0.93718 1.07353 1.20176 0.93251 0.92156 1.18785 1.17329 0.85299 0.84059 0.75579 1.90721 1.16706 1.84532 1.51716 1.45794 1.09860 1.05998 1.75327 1.20830 0.95241 0.78623 1.01959 1.22528 0.98627 0.92544 1.03041 0.87989 1.24225 1.01477 0.91447 1.01119 0.87911 1.21062 0.88201 0.96357 0.88558 1.45199 1.63357 1.06401 1.16855 1.18954 1.33991 0.89435 0.93150 0.90661 1.24893 1.01109 0.99164 0.95149 1.69891 1.54403 1.32985 0.98951 0.86190 0.78456 0.83901 0.77154 1.21082 1.21554 1.21016 1.21136 0.91426 0.88723 0.95927 1.23989 1.00552 1.03211 0.91438 0.87951 0.90468 0.91979 0.87922 0.81370 0.83588 0.76468 0.91239 0.91550 0.89215 0.95887 0.93522 0.95867 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.88 36.00 0.36 -0.46 16 2 C 0.10 1.02 7.17 -81.89 -0.59 0.44 16 3 N -0.55 -3.85 5.90 -9.11 -0.05 -3.90 16 4 H 0.41 1.45 8.96 -40.82 -0.37 1.08 16 5 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 6 C -0.17 -1.58 10.56 -37.50 -0.40 -1.98 16 7 C -0.23 -2.80 6.29 -103.35 -0.65 -3.45 16 8 C 0.59 8.48 7.81 -12.59 -0.10 8.38 16 9 O -0.56 -9.51 14.81 5.26 0.08 -9.43 16 10 N -0.72 -9.48 5.55 -61.43 -0.34 -9.82 16 11 C 0.16 2.28 5.95 -4.04 -0.02 2.25 16 12 C -0.15 -2.36 5.39 -90.63 -0.49 -2.85 16 13 H 0.10 1.61 8.04 -51.93 -0.42 1.19 16 14 C -0.16 -3.13 6.85 -89.22 -0.61 -3.74 16 15 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 16 C 0.18 4.46 5.70 -2.41 -0.01 4.45 16 17 N -0.59 -15.42 3.38 -168.85 -0.57 -15.99 16 18 C -0.23 -6.39 10.35 -15.06 -0.16 -6.55 16 19 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 20 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 21 N -0.92 -27.01 10.87 55.49 0.60 -26.40 16 22 Si 0.91 22.08 29.56 -169.99 -5.03 17.05 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.15 3.26 7.04 -2.41 -0.02 3.25 16 27 C -0.17 -3.11 6.74 -89.22 -0.60 -3.71 16 28 H 0.10 1.73 8.12 -51.93 -0.42 1.31 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 1.12 6.47 -51.93 -0.34 0.79 16 32 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 33 H 0.15 1.15 7.69 -52.49 -0.40 0.75 16 34 H 0.40 4.48 7.53 -40.82 -0.31 4.17 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.01 7.94 -51.93 -0.41 0.59 16 37 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 38 H 0.02 0.59 8.14 -51.92 -0.42 0.16 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -33.79 340.89 -9.69 -43.47 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.93 Total: 4.47 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.58 Total: -4.59 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.36 Total: -56.11 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.79 -9.69 -43.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977985169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.577 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds