Wall clock time and date at job start Tue Mar 31 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34656 * 125.80136 * 2 1 4 4 H 0.97002 * 124.85185 * 359.97438 * 3 2 1 5 5 C 1.36449 * 110.29717 * 180.02562 * 3 2 1 6 6 C 1.34484 * 108.85731 * 359.74985 * 5 3 2 7 7 C 1.36772 * 125.80191 * 180.02562 * 2 1 3 8 8 C 1.47265 * 126.94333 * 359.94688 * 7 2 1 9 9 O 1.21625 * 119.99528 * 359.97438 * 8 7 2 10 10 N 1.34771 * 119.99943 * 180.02562 * 8 7 2 11 11 C 1.46505 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47203 * 179.97438 * 11 10 8 13 13 H 1.09004 * 115.51602 * 330.41120 * 12 11 10 14 14 C 1.52997 * 117.44448 * 185.00000 * 12 11 10 15 15 H 1.08998 * 119.53736 * 4.10779 * 14 12 11 16 16 C 1.54384 * 118.12809 * 160.81017 * 14 12 11 17 17 N 1.48147 * 104.62345 * 87.18511 * 16 14 12 18 18 C 1.36937 * 127.83809 * 140.39531 * 17 16 14 19 19 H 1.08002 * 119.99238 * 195.59853 * 18 17 16 20 20 C 1.38810 * 119.99994 * 15.59663 * 18 17 16 21 21 N 1.31620 * 119.99862 * 9.10173 * 20 18 17 22 22 Si 1.86797 * 119.99935 * 189.09597 * 20 18 17 23 23 H 1.48500 * 109.47270 * 60.00035 * 22 20 18 24 24 H 1.48492 * 109.47152 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47148 * 300.00123 * 22 20 18 26 26 C 1.48148 * 104.31933 * 320.41763 * 17 16 14 27 27 C 1.52995 * 117.44490 * 115.75519 * 12 11 10 28 28 H 1.09002 * 119.54474 * 355.88287 * 27 12 11 29 29 H 1.09002 * 109.47764 * 269.97851 * 1 2 3 30 30 H 1.09001 * 109.47314 * 29.97535 * 1 2 3 31 31 H 1.09004 * 109.47081 * 149.97366 * 1 2 3 32 32 H 1.08007 * 125.56947 * 180.02562 * 5 3 2 33 33 H 1.07996 * 126.83299 * 180.24834 * 6 5 3 34 34 H 0.96996 * 120.00130 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.47313 * 59.99447 * 11 10 8 36 36 H 1.09006 * 109.46783 * 299.99717 * 11 10 8 37 37 H 1.09001 * 110.40814 * 205.97275 * 16 14 12 38 38 H 1.09010 * 110.40399 * 328.39988 * 16 14 12 39 39 H 0.96999 * 119.99692 * 180.02562 * 21 20 18 40 40 H 1.09000 * 110.41069 * 280.79665 * 26 17 16 41 41 H 1.09009 * 110.50408 * 158.41480 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2946 1.0921 0.0000 4 1 1.9733 2.0074 -0.0004 5 6 3.6095 0.7274 -0.0006 6 6 3.6881 -0.6151 0.0046 7 6 2.3070 -1.1093 -0.0005 8 6 1.8702 -2.5157 0.0000 9 8 0.6839 -2.7839 0.0014 10 7 2.7849 -3.5054 -0.0001 11 6 2.3504 -4.9045 -0.0002 12 6 3.5766 -5.8194 -0.0009 13 1 4.4643 -5.4145 -0.4869 14 6 3.3329 -7.3252 -0.1195 15 1 2.3182 -7.6954 -0.2663 16 6 4.5077 -8.2194 -0.5706 17 7 5.2278 -8.5506 0.6810 18 6 5.7905 -9.7478 1.0348 19 1 6.0624 -9.9336 2.0634 20 6 6.0113 -10.7225 0.0714 21 7 5.8495 -10.4366 -1.2031 22 14 6.5384 -12.4397 0.5839 23 1 5.5006 -13.0340 1.4641 24 1 6.7078 -13.2866 -0.6240 25 1 7.8265 -12.3635 1.3190 26 6 5.2004 -7.2928 1.4633 27 6 3.7895 -6.7142 1.2217 28 1 3.1151 -6.6294 2.0738 29 1 -0.3635 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 4.4497 1.4060 -0.0003 33 1 4.5889 -1.2109 0.0093 34 1 3.7310 -3.2914 -0.0008 35 1 1.7518 -5.0990 -0.8901 36 1 1.7519 -5.0991 0.8898 37 1 4.1343 -9.1266 -1.0457 38 1 5.1608 -7.6738 -1.2518 39 1 6.0035 -11.1178 -1.8763 40 1 5.9616 -6.6024 1.0998 41 1 5.3502 -7.4989 2.5232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977985169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:48 Heat of formation + Delta-G solvation = 39.771248 kcal Electronic energy + Delta-G solvation = -21930.563379 eV Core-core repulsion = 18618.736259 eV Total energy + Delta-G solvation = -3311.827120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.11414 -40.64900 -39.75766 -36.27827 -34.94497 -32.82770 -32.40539 -31.89101 -29.00945 -28.80020 -27.34685 -26.37804 -23.49582 -22.64955 -21.71938 -21.45807 -20.84324 -20.19479 -18.82372 -18.53229 -17.22640 -16.86813 -16.66023 -16.33940 -15.87255 -15.51037 -15.14723 -14.88183 -14.60464 -14.50562 -14.19912 -14.00386 -13.95399 -13.56931 -13.38849 -13.32503 -13.16668 -12.86933 -12.67514 -12.45494 -12.31255 -11.96978 -11.94467 -11.75027 -11.05102 -10.85123 -10.66822 -10.52288 -10.05868 -9.67741 -9.07027 -8.89851 -7.90742 -5.27134 0.78588 1.46684 1.50285 1.56780 1.58647 2.13332 2.48531 2.52984 2.61476 2.80324 3.27453 3.64650 3.72505 3.87071 3.96042 4.06827 4.23775 4.29220 4.33152 4.36048 4.44629 4.57973 4.67643 4.71032 4.75274 4.77989 4.95313 5.01500 5.03117 5.10749 5.23378 5.33482 5.36300 5.45384 5.54016 5.57201 5.67263 5.83717 6.02188 6.18885 6.65363 6.76382 7.01823 7.38999 7.69177 8.47900 9.22925 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042647 B = 0.002579 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.401768 B =10854.711186 C =11144.830326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.539 5.539 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.189 4.189 7 C -0.271 4.271 8 C 0.583 3.417 9 O -0.592 6.592 10 N -0.713 5.713 11 C 0.167 3.833 12 C -0.109 4.109 13 H 0.108 0.892 14 C -0.176 4.176 15 H 0.113 0.887 16 C 0.189 3.811 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.081 0.919 20 C -0.064 4.064 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.274 1.274 26 C 0.149 3.851 27 C -0.161 4.161 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.206 0.794 33 H 0.156 0.844 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.003 0.997 39 H 0.250 0.750 40 H 0.028 0.972 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 26.456 2.606 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 N -0.136 5.136 4 H 0.273 0.727 5 C -0.131 4.131 6 C -0.212 4.212 7 C -0.281 4.281 8 C 0.374 3.626 9 O -0.475 6.475 10 N -0.364 5.364 11 C 0.043 3.957 12 C -0.128 4.128 13 H 0.126 0.874 14 C -0.196 4.196 15 H 0.131 0.869 16 C 0.064 3.936 17 N -0.345 5.345 18 C -0.371 4.371 19 H 0.098 0.902 20 C -0.257 4.257 21 N -0.595 5.595 22 Si 0.809 3.191 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.199 1.199 26 C 0.024 3.976 27 C -0.181 4.181 28 H 0.141 0.859 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.223 0.777 33 H 0.174 0.826 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.020 0.980 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.424 26.143 2.543 27.296 hybrid contribution 0.738 -0.930 -0.079 1.190 sum -6.685 25.213 2.464 26.200 Atomic orbital electron populations 1.20532 0.86505 1.04267 1.03671 1.20506 0.94350 0.86157 1.01201 1.41614 1.06031 1.08693 1.57235 0.72687 1.22298 0.86411 0.96316 1.08044 1.22318 0.95205 0.94981 1.08731 1.20210 0.95167 0.91245 1.21518 1.17770 0.84848 0.85232 0.74777 1.90696 1.18115 1.85210 1.53514 1.45678 1.10432 1.05201 1.75128 1.20619 0.94144 0.79180 1.01790 1.22399 0.99216 0.90602 1.00568 0.87383 1.23927 0.99996 0.93185 1.02514 0.86926 1.20794 0.89338 0.95488 0.87989 1.45520 1.63727 1.07418 1.17803 1.19358 1.33602 0.90662 0.93516 0.90166 1.25756 1.01795 1.02986 0.95177 1.70091 1.55741 1.33816 0.99890 0.85123 0.78383 0.79031 0.76606 1.20372 1.21941 1.19942 1.21288 0.93341 0.87196 0.95774 1.23928 0.98762 1.03388 0.91974 0.85940 0.90170 0.89015 0.90669 0.77682 0.82600 0.75228 0.91593 0.91669 0.92864 0.97959 0.94106 0.95408 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.88 71.23 0.70 -0.78 16 2 C 0.10 1.78 7.17 41.78 0.30 2.08 16 3 N -0.54 -5.77 5.90 -182.73 -1.08 -6.85 16 4 H 0.43 1.40 8.96 -92.71 -0.83 0.57 16 5 C 0.00 -0.03 11.89 83.12 0.99 0.95 16 6 C -0.19 -3.18 10.56 23.62 0.25 -2.93 16 7 C -0.27 -6.21 6.29 -19.04 -0.12 -6.33 16 8 C 0.58 16.58 7.81 86.62 0.68 17.25 16 9 O -0.59 -20.46 14.81 -4.11 -0.06 -20.52 16 10 N -0.71 -18.03 5.55 -466.53 -2.59 -20.62 16 11 C 0.17 4.63 5.95 86.38 0.51 5.15 16 12 C -0.11 -3.32 5.39 -10.80 -0.06 -3.38 16 13 H 0.11 3.24 8.04 -2.38 -0.02 3.22 16 14 C -0.18 -6.75 6.85 -9.89 -0.07 -6.82 16 15 H 0.11 4.10 8.14 -2.39 -0.02 4.09 16 16 C 0.19 9.49 5.70 86.53 0.49 9.98 16 17 N -0.62 -32.63 3.38 -688.12 -2.33 -34.96 16 18 C -0.24 -13.83 10.35 84.03 0.87 -12.96 16 19 H 0.08 4.36 7.85 -2.91 -0.02 4.33 16 20 C -0.06 -3.65 5.40 84.86 0.46 -3.19 16 21 N -0.95 -57.68 10.87 21.65 0.24 -57.44 16 22 Si 0.98 45.96 29.56 68.60 2.03 47.99 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 C 0.15 6.21 7.04 86.54 0.61 6.82 16 27 C -0.16 -5.58 6.74 -9.89 -0.07 -5.65 16 28 H 0.12 3.82 8.12 -2.39 -0.02 3.80 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.67 6.47 -2.39 -0.02 1.65 16 32 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.16 2.13 7.69 -2.91 -0.02 2.11 16 34 H 0.41 8.56 7.53 -92.71 -0.70 7.86 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.88 7.94 -2.38 -0.02 1.86 16 37 H 0.05 3.03 6.51 -2.39 -0.02 3.01 16 38 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 39 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -75.48 340.89 1.29 -74.19 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -0.47 Total: 18.00 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.55 Total: 0.21 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -5.76 Total: -119.87 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.06 Total: -20.52 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -75.48 1.29 -74.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977985169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.964 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds