Wall clock time and date at job start Tue Mar 31 2020 02:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48501 * 109.47229 * 269.99842 * 3 2 1 5 5 H 1.48500 * 109.47505 * 30.00016 * 3 2 1 6 6 H 1.48499 * 109.47063 * 150.00172 * 3 2 1 7 7 C 1.38809 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.47060 * 136.06048 * 359.94873 * 9 7 2 11 11 C 1.53502 * 87.98821 * 207.15747 * 10 9 7 12 12 C 1.47066 * 136.05349 * 179.97438 * 9 7 2 13 13 H 1.09000 * 113.46827 * 267.61868 * 12 9 7 14 14 C 1.53001 * 113.46961 * 38.06692 * 12 9 7 15 15 N 1.46498 * 109.46763 * 285.48958 * 14 12 9 16 16 C 1.34783 * 120.00109 * 179.97438 * 15 14 12 17 17 O 1.21695 * 119.99634 * 0.02562 * 16 15 14 18 18 C 1.46669 * 120.00113 * 180.02562 * 16 15 14 19 19 C 1.37759 * 126.22596 * 180.02562 * 18 16 15 20 20 C 1.40101 * 107.11011 * 180.02562 * 19 18 16 21 21 C 1.35330 * 107.93050 * 0.02562 * 20 19 18 22 22 N 1.36007 * 108.67390 * 359.72625 * 21 20 19 23 23 H 0.97003 * 125.63073 * 180.30586 * 22 21 20 24 24 C 1.51499 * 110.12912 * 179.97438 * 21 20 19 25 25 C 1.54404 * 105.02746 * 17.01039 * 24 21 20 26 26 C 1.51354 * 141.74387 * 180.02562 * 20 19 18 27 27 H 0.97003 * 119.99474 * 0.02562 * 1 2 3 28 28 H 1.09007 * 113.46761 * 321.93681 * 10 9 7 29 29 H 1.09003 * 113.46830 * 92.37649 * 10 9 7 30 30 H 1.08997 * 114.20475 * 220.34600 * 11 10 9 31 31 H 1.08995 * 114.20623 * 87.51550 * 11 10 9 32 32 H 1.08998 * 109.47322 * 45.48839 * 14 12 9 33 33 H 1.09005 * 109.47186 * 165.49224 * 14 12 9 34 34 H 0.97002 * 120.00400 * 0.02562 * 15 14 12 35 35 H 1.08002 * 126.44630 * 359.97438 * 19 18 16 36 36 H 1.09000 * 110.33168 * 135.89373 * 24 21 20 37 37 H 1.08995 * 110.33132 * 258.12503 * 24 21 20 38 38 H 1.09001 * 110.92277 * 92.33572 * 25 24 21 39 39 H 1.08998 * 110.92390 * 215.93837 * 25 24 21 40 40 H 1.08994 * 110.33652 * 281.88183 * 26 20 19 41 41 H 1.08997 * 110.33621 * 44.12856 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0877 -2.7948 0.0010 11 6 0.3419 -4.0917 0.7007 12 6 1.6799 -3.8153 0.0005 13 1 1.7442 -4.2466 -0.9984 14 6 2.8991 -4.1404 0.8659 15 7 4.1154 -3.6902 0.1847 16 6 5.3189 -3.8724 0.7636 17 8 5.3951 -4.4115 1.8519 18 6 6.5365 -3.4211 0.0818 19 6 7.8255 -3.5420 0.5526 20 6 8.6714 -2.9808 -0.4131 21 6 7.9016 -2.5364 -1.4335 22 7 6.5996 -2.8044 -1.1456 23 1 5.8407 -2.5937 -1.7119 24 6 8.7694 -1.9169 -2.5098 25 6 10.1969 -2.4266 -2.2157 26 6 10.1322 -2.7067 -0.6985 27 1 -0.4849 0.8401 -0.0004 28 1 -0.7224 -2.1585 0.6179 29 1 -0.4938 -2.9545 -0.9979 30 1 -0.1731 -4.9837 0.3441 31 1 0.3830 -4.0207 1.7876 32 1 2.8101 -3.6308 1.8252 33 1 2.9518 -5.2168 1.0298 34 1 4.0547 -3.2601 -0.6827 35 1 8.1273 -3.9853 1.4901 36 1 8.4445 -2.2487 -3.4959 37 1 8.7348 -0.8294 -2.4448 38 1 10.4060 -3.3406 -2.7717 39 1 10.9380 -1.6592 -2.4391 40 1 10.4707 -1.8353 -0.1381 41 1 10.7372 -3.5780 -0.4475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038906503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:38 Heat of formation + Delta-G solvation = 46.872381 kcal Electronic energy + Delta-G solvation = -22705.634476 eV Core-core repulsion = 19394.115284 eV Total energy + Delta-G solvation = -3311.519192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.64662 -40.64718 -39.64339 -36.87686 -35.63741 -34.28717 -32.02574 -30.32623 -29.87033 -28.27220 -28.01998 -25.43243 -24.41471 -23.01918 -21.98300 -21.34603 -20.86495 -20.05954 -19.30339 -18.43979 -17.18468 -17.07744 -16.78581 -16.62979 -16.16552 -15.81418 -15.43156 -14.95991 -14.73060 -14.50398 -14.40421 -13.90939 -13.66151 -13.56173 -13.37019 -13.01758 -12.74597 -12.72069 -12.62620 -12.39455 -12.36194 -11.96876 -11.91601 -11.74107 -11.67536 -11.42627 -10.98162 -10.86298 -10.20181 -9.83458 -8.94960 -8.92620 -7.91699 -5.23316 0.37591 1.38457 1.41497 1.48386 1.64063 1.84127 2.08235 2.30996 2.42452 3.30195 3.39154 3.56452 3.74195 3.85348 3.92496 4.09053 4.25212 4.27814 4.29912 4.43516 4.56622 4.60699 4.66330 4.82871 4.85950 4.90140 5.00565 5.03440 5.05521 5.09950 5.16288 5.25726 5.28261 5.33922 5.44025 5.55238 5.71248 5.74071 5.93613 5.94974 6.37092 6.50535 6.89647 7.05488 7.59893 8.59927 9.25763 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.004623 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.906068 B = 6055.336681 C = 7321.254051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.208 4.208 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.134 4.134 12 C 0.133 3.867 13 H 0.071 0.929 14 C 0.130 3.870 15 N -0.709 5.709 16 C 0.585 3.415 17 O -0.577 6.577 18 C -0.068 4.068 19 C -0.104 4.104 20 C -0.217 4.217 21 C 0.022 3.978 22 N -0.517 5.517 23 H 0.422 0.578 24 C -0.043 4.043 25 C -0.105 4.105 26 C -0.050 4.050 27 H 0.246 0.754 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.403 0.597 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.039 -7.283 -7.363 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.337 4.337 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.018 3.982 11 C -0.173 4.173 12 C 0.027 3.973 13 H 0.088 0.912 14 C 0.006 3.994 15 N -0.358 5.358 16 C 0.374 3.626 17 O -0.458 6.458 18 C -0.181 4.181 19 C -0.131 4.131 20 C -0.223 4.223 21 C -0.098 4.098 22 N -0.112 5.112 23 H 0.260 0.740 24 C -0.081 4.081 25 C -0.143 4.143 26 C -0.087 4.087 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.237 0.763 35 H 0.157 0.843 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.924 -7.303 -6.649 19.595 hybrid contribution -0.768 1.441 -0.299 1.660 sum 16.156 -5.862 -6.949 18.538 Atomic orbital electron populations 1.70000 1.06217 1.25268 1.58532 1.25489 0.96395 1.00370 1.03751 0.85263 0.77477 0.80203 0.77534 1.20886 1.22416 1.20312 1.19117 0.90319 0.82550 1.41673 0.89988 1.45975 1.03707 0.99919 1.85934 1.22050 0.87690 0.92071 0.96424 1.23492 0.95573 0.98194 1.00001 1.22586 0.92895 0.84862 0.96992 0.91168 1.21684 0.82821 0.99235 0.95701 1.45790 1.05775 1.60966 1.23286 1.17283 0.82521 0.78318 0.84485 1.90771 1.87049 1.46169 1.21783 1.20062 0.94828 1.13010 0.90157 1.20834 0.89770 1.02496 0.99999 1.20751 0.97939 1.07548 0.96064 1.22056 0.82903 1.03158 1.01640 1.41379 1.07967 1.46107 1.15766 0.73993 1.20947 0.92152 1.00368 0.94629 1.22368 0.94842 1.02724 0.94352 1.20596 0.89074 1.01964 0.97104 0.94482 0.94571 0.95775 0.88045 0.90256 0.93789 0.89893 0.76274 0.84271 0.89049 0.88760 0.89852 0.87647 0.90361 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 11.51 21.65 0.25 -56.47 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.21 -11.06 10.55 84.03 0.89 -10.17 16 8 H 0.08 4.16 7.50 -2.91 -0.02 4.14 16 9 N -0.63 -30.06 3.65 -713.85 -2.61 -32.67 16 10 C 0.14 6.46 7.39 83.18 0.61 7.08 16 11 C -0.13 -4.55 8.03 30.94 0.25 -4.30 16 12 C 0.13 4.82 4.10 41.80 0.17 4.99 16 13 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 14 C 0.13 4.62 5.52 86.38 0.48 5.10 16 15 N -0.71 -24.34 5.33 -467.08 -2.49 -26.83 16 16 C 0.58 21.61 7.79 86.44 0.67 22.28 16 17 O -0.58 -25.01 16.88 -4.33 -0.07 -25.08 16 18 C -0.07 -2.19 7.05 40.34 0.28 -1.91 16 19 C -0.10 -3.18 10.66 22.61 0.24 -2.94 16 20 C -0.22 -5.39 6.89 -19.88 -0.14 -5.52 16 21 C 0.02 0.49 8.01 41.49 0.33 0.83 16 22 N -0.52 -13.36 6.00 -171.11 -1.03 -14.39 16 23 H 0.42 9.30 8.18 -92.71 -0.76 8.54 16 24 C -0.04 -0.60 6.79 30.58 0.21 -0.39 16 25 C -0.11 -1.13 7.12 31.55 0.22 -0.91 16 26 C -0.05 -0.81 6.79 30.54 0.21 -0.60 16 27 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.04 1.88 7.12 -2.38 -0.02 1.86 16 29 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.08 2.74 8.12 -2.39 -0.02 2.72 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.40 12.70 7.50 -92.71 -0.69 12.00 16 35 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.63 340.78 0.58 -72.05 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.40 Total: 25.54 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 4.90 Total: 10.25 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -5.87 Total: -130.35 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.07 Total: -25.08 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.63 0.58 -72.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038906503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.919 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds