Wall clock time and date at job start Tue Mar 31 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38628 * 120.76259 * 2 1 4 4 C 1.38558 * 119.36016 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.55357 * 180.02562 * 4 3 2 6 6 N 1.31526 * 120.89905 * 359.74114 * 4 3 2 7 7 C 1.32722 * 121.64009 * 0.53154 * 6 4 3 8 8 C 1.48169 * 119.71983 * 179.75194 * 7 6 4 9 9 O 1.21520 * 120.00080 * 186.69785 * 8 7 6 10 10 N 1.34780 * 120.00254 * 6.69078 * 8 7 6 11 11 C 1.46500 * 119.99534 * 357.06573 * 10 8 7 12 12 C 1.46497 * 120.00101 * 177.06072 * 10 8 7 13 13 C 1.53495 * 114.20975 * 240.00512 * 12 10 8 14 14 N 1.47062 * 87.98468 * 220.15085 * 13 12 10 15 15 C 1.36942 * 136.06001 * 207.08614 * 14 13 12 16 16 H 1.08005 * 119.99663 * 7.92775 * 15 14 13 17 17 C 1.38804 * 120.00317 * 187.93031 * 15 14 13 18 18 N 1.31621 * 120.00111 * 194.21688 * 17 15 14 19 19 Si 1.86798 * 120.00039 * 14.21533 * 17 15 14 20 20 H 1.48491 * 109.47297 * 269.99864 * 19 17 15 21 21 H 1.48498 * 109.47225 * 30.00035 * 19 17 15 22 22 H 1.48509 * 109.46976 * 149.99832 * 19 17 15 23 23 C 1.47067 * 87.88849 * 27.34069 * 14 13 12 24 24 C 1.38589 * 120.75522 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47118 * 269.98031 * 1 2 3 26 26 H 1.09007 * 109.46702 * 29.97921 * 1 2 3 27 27 H 1.08999 * 109.47478 * 149.97599 * 1 2 3 28 28 H 1.08000 * 120.31822 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46811 * 89.99737 * 5 4 3 30 30 H 1.08998 * 109.47201 * 210.00252 * 5 4 3 31 31 H 1.09001 * 109.46630 * 329.99996 * 5 4 3 32 32 H 1.08998 * 109.47390 * 276.09590 * 11 10 8 33 33 H 1.08998 * 109.47133 * 36.10288 * 11 10 8 34 34 H 1.09005 * 109.46574 * 156.09699 * 11 10 8 35 35 H 1.09006 * 113.28159 * 13.07436 * 12 10 8 36 36 H 1.08998 * 113.47212 * 105.36882 * 13 12 10 37 37 H 1.09004 * 113.46513 * 334.92428 * 13 12 10 38 38 H 0.97003 * 119.99526 * 354.92616 * 18 17 15 39 39 H 1.08995 * 113.47019 * 87.43807 * 23 14 13 40 40 H 1.09000 * 113.46811 * 217.88062 * 23 14 13 41 41 H 1.07995 * 120.47009 * 359.96060 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2160 1.1912 0.0000 4 6 3.6012 1.1573 -0.0005 5 6 4.3763 2.4496 0.0000 6 7 4.2488 0.0125 0.0040 7 6 3.6081 -1.1498 -0.0011 8 6 4.3805 -2.4143 -0.0012 9 8 3.8058 -3.4773 -0.1286 10 7 5.7206 -2.3854 0.1399 11 6 6.4202 -1.1014 0.2288 12 6 6.4775 -3.6381 0.2045 13 6 7.2707 -3.8278 1.5048 14 7 8.3663 -4.3811 0.6947 15 6 9.3931 -5.2644 0.8965 16 1 9.4478 -5.8278 1.8164 17 6 10.3635 -5.4357 -0.0810 18 7 11.1816 -6.4652 -0.0230 19 14 10.5085 -4.2052 -1.4790 20 1 9.6477 -4.6366 -2.6094 21 1 10.0721 -2.8665 -1.0073 22 1 11.9212 -4.1344 -1.9315 23 6 7.8778 -3.5634 -0.4259 24 6 2.2156 -1.1910 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6937 2.1366 0.0004 29 1 4.5635 2.7605 1.0279 30 1 5.3262 2.3038 -0.5143 31 1 3.7997 3.2193 -0.5131 32 1 6.6053 -0.7182 -0.7746 33 1 5.8061 -0.3905 0.7818 34 1 7.3699 -1.2401 0.7457 35 1 5.8949 -4.5094 -0.0948 36 1 6.8237 -4.5537 2.1841 37 1 7.5265 -2.8900 1.9980 38 1 11.1554 -7.0630 0.7405 39 1 8.2935 -2.5560 -0.4416 40 1 7.9480 -4.0641 -1.3915 41 1 1.6958 -2.1376 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043186814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:07 Heat of formation + Delta-G solvation = 80.511095 kcal Electronic energy + Delta-G solvation = -22852.698990 eV Core-core repulsion = 19542.638482 eV Total energy + Delta-G solvation = -3310.060508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02992 -39.55218 -37.91987 -35.06893 -34.15056 -32.95865 -32.13605 -28.38985 -28.19081 -27.67645 -26.67836 -25.27198 -24.87436 -22.27484 -21.51307 -20.04936 -18.94658 -17.62297 -17.31899 -16.67992 -16.24622 -16.03736 -15.66330 -15.08259 -14.61120 -14.39327 -13.79718 -13.71664 -13.67676 -13.34152 -13.26917 -12.97951 -12.74775 -12.57526 -12.41556 -12.19006 -11.94520 -11.91483 -11.74607 -11.59543 -11.15691 -10.60366 -10.24720 -10.09405 -9.81104 -9.61408 -9.26581 -9.22730 -9.20539 -8.71624 -8.21368 -7.18204 -6.30731 -3.23404 0.46974 0.90376 2.69429 3.04848 3.43887 3.48902 3.62772 3.64514 3.85366 4.23660 4.34786 4.60396 4.67609 4.77839 4.84613 4.95959 5.03777 5.14097 5.16403 5.23855 5.28690 5.37439 5.39652 5.48165 5.55186 5.67478 5.76281 5.79811 5.88424 5.94319 5.97871 6.16603 6.21443 6.31623 6.38996 6.45500 6.61586 7.00675 7.09565 7.49468 7.62953 8.24215 8.25556 8.97453 9.49968 10.35355 11.19530 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.003760 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.698621 B = 7445.233593 C = 7984.627884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 C -0.157 4.157 4 C 0.123 3.877 5 C -0.104 4.104 6 N -0.453 5.453 7 C 0.096 3.904 8 C 0.564 3.436 9 O -0.538 6.538 10 N -0.577 5.577 11 C 0.070 3.930 12 C 0.097 3.903 13 C 0.109 3.891 14 N -0.617 5.617 15 C -0.304 4.304 16 H 0.084 0.916 17 C -0.022 4.022 18 N -0.931 5.931 19 Si 1.062 2.938 20 H -0.293 1.293 21 H -0.281 1.281 22 H -0.294 1.294 23 C 0.095 3.905 24 C -0.121 4.121 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.262 0.738 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.728 20.800 0.069 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.177 4.177 4 C -0.016 4.016 5 C -0.162 4.162 6 N -0.167 5.167 7 C -0.042 4.042 8 C 0.350 3.650 9 O -0.415 6.415 10 N -0.307 5.307 11 C -0.072 4.072 12 C -0.007 4.007 13 C -0.019 4.019 14 N -0.345 5.345 15 C -0.430 4.430 16 H 0.101 0.899 17 C -0.222 4.222 18 N -0.572 5.572 19 Si 0.893 3.107 20 H -0.220 1.220 21 H -0.207 1.207 22 H -0.222 1.222 23 C -0.032 4.032 24 C -0.142 4.142 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.052 20.328 -1.341 27.893 hybrid contribution -1.526 -0.212 1.498 2.149 sum -20.578 20.116 0.157 28.778 Atomic orbital electron populations 1.20835 0.89714 1.03594 1.03119 1.20342 0.97075 0.92535 0.95450 1.22033 0.94817 0.98771 1.02038 1.21485 0.91262 0.94237 0.94654 1.20739 1.00519 0.91547 1.03347 1.68006 1.39078 0.97627 1.12006 1.21238 0.91680 0.92149 0.99084 1.17940 0.82211 0.87218 0.77621 1.90772 1.69658 1.30361 1.50735 1.47791 1.05594 1.08312 1.68992 1.22461 0.97858 0.84370 1.02547 1.23652 0.91415 0.86222 0.99424 1.22774 0.88518 0.96674 0.93912 1.45883 1.32972 1.47549 1.08132 1.20117 1.01707 1.14829 1.06346 0.89852 1.25793 0.93961 1.00774 1.01634 1.70902 1.41773 1.13664 1.30899 0.83792 0.75613 0.75779 0.75514 1.22016 1.20741 1.22183 1.23121 0.90149 0.95859 0.94036 1.21986 0.93757 0.99555 0.98888 0.90295 0.90866 0.90659 0.84555 0.90174 0.90028 0.90629 0.92675 0.87464 0.91661 0.85679 0.93222 0.94357 0.92790 0.93008 0.92639 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.06 36.00 0.36 -0.29 16 2 C -0.05 -0.40 5.91 -104.35 -0.62 -1.02 16 3 C -0.16 -1.24 9.45 -39.32 -0.37 -1.61 16 4 C 0.12 1.15 6.78 -82.61 -0.56 0.59 16 5 C -0.10 -0.64 10.17 36.00 0.37 -0.28 16 6 N -0.45 -5.51 5.92 -6.06 -0.04 -5.55 16 7 C 0.10 1.33 6.63 -83.01 -0.55 0.78 16 8 C 0.56 9.54 7.66 -12.18 -0.09 9.45 16 9 O -0.54 -10.48 15.85 5.35 0.08 -10.39 16 10 N -0.58 -9.79 3.12 -174.55 -0.54 -10.34 16 11 C 0.07 1.00 8.18 59.85 0.49 1.49 16 12 C 0.10 1.91 4.58 -67.68 -0.31 1.60 16 13 C 0.11 2.29 8.23 -8.50 -0.07 2.22 16 14 N -0.62 -15.72 3.63 -184.61 -0.67 -16.39 16 15 C -0.30 -8.95 11.04 -15.06 -0.17 -9.12 16 16 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 17 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 18 N -0.93 -29.79 13.70 55.49 0.76 -29.03 16 19 Si 1.06 27.04 25.50 -169.99 -4.33 22.70 16 20 H -0.29 -7.22 6.98 56.52 0.39 -6.83 16 21 H -0.28 -6.57 5.57 56.52 0.32 -6.26 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 23 C 0.09 2.09 5.00 -8.37 -0.04 2.05 16 24 C -0.12 -1.40 9.34 -39.05 -0.36 -1.77 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 27 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 28 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.11 1.39 5.17 -53.12 -0.27 1.12 16 34 H 0.06 0.96 5.94 -51.93 -0.31 0.65 16 35 H 0.13 2.62 7.27 -51.93 -0.38 2.25 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.76 7.06 -51.93 -0.37 0.40 16 38 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 39 H 0.05 1.09 5.28 -51.93 -0.27 0.82 16 40 H 0.06 1.27 6.18 -51.93 -0.32 0.95 16 41 H 0.15 1.67 7.66 -52.49 -0.40 1.27 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -34.82 330.29 -7.57 -42.39 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.79 Total: -1.68 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -2.02 Total: 3.31 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.49 Total: -61.31 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 27.04 SS G_CDS: -4.33 Total: 22.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.82 -7.57 -42.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043186814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.904 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds