Wall clock time and date at job start Tue Mar 31 2020 02:50:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.50696 * 109.47230 * 2 1
4 4 C 1.38359 * 120.34937 * 270.02230 * 3 2 1
5 5 N 1.31922 * 121.08257 * 179.97438 * 4 3 2
6 6 C 1.31700 * 121.87946 * 359.65857 * 5 4 3
7 7 C 1.39522 * 120.56379 * 0.62902 * 6 5 4
8 8 C 1.47833 * 120.55794 * 179.68406 * 7 6 5
9 9 O 1.21559 * 120.00087 * 141.03120 * 8 7 6
10 10 N 1.34770 * 120.00326 * 321.30884 * 8 7 6
11 11 C 1.46507 * 119.99835 * 4.79404 * 10 8 7
12 12 C 1.46494 * 120.00563 * 184.79959 * 10 8 7
13 13 C 1.53951 * 113.74511 * 218.73848 * 12 10 8
14 14 N 1.47809 * 86.03805 * 222.08261 * 13 12 10
15 15 C 1.36931 * 134.45569 * 204.64909 * 14 13 12
16 16 H 1.08003 * 120.00556 * 173.66756 * 15 14 13
17 17 C 1.38814 * 120.00248 * 353.66020 * 15 14 13
18 18 N 1.31624 * 119.99554 * 5.04588 * 17 15 14
19 19 Si 1.86805 * 120.00325 * 185.05178 * 17 15 14
20 20 H 1.48493 * 109.47054 * 94.98839 * 19 17 15
21 21 H 1.48502 * 109.46792 * 214.99020 * 19 17 15
22 22 H 1.48502 * 109.46871 * 334.98855 * 19 17 15
23 23 C 1.47582 * 91.05076 * 24.54642 * 14 13 12
24 24 C 1.38353 * 120.35137 * 89.99697 * 3 2 1
25 25 H 1.08999 * 109.47418 * 300.00189 * 1 2 3
26 26 H 1.09004 * 109.47401 * 60.00319 * 1 2 3
27 27 H 1.09006 * 109.47087 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47418 * 239.99811 * 2 1 3
29 29 H 1.09008 * 109.46925 * 119.99700 * 2 1 3
30 30 H 1.08000 * 119.45916 * 359.97438 * 4 3 2
31 31 H 1.07994 * 119.71631 * 180.33443 * 6 5 4
32 32 H 1.09000 * 109.46970 * 85.30141 * 11 10 8
33 33 H 1.09001 * 109.47178 * 205.30000 * 11 10 8
34 34 H 1.09005 * 109.47128 * 325.30327 * 11 10 8
35 35 H 1.09007 * 112.94404 * 350.32721 * 12 10 8
36 36 H 1.09001 * 113.76379 * 336.34567 * 13 12 10
37 37 H 1.08997 * 113.76996 * 107.74370 * 13 12 10
38 38 H 0.97005 * 119.99546 * 179.97438 * 18 17 15
39 39 H 1.09001 * 113.76624 * 221.15111 * 23 14 13
40 40 H 1.09000 * 113.76667 * 89.75904 * 23 14 13
41 41 H 1.08003 * 120.85703 * 0.04260 * 24 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2649 2.0800 -1.1940
5 7 2.7041 3.3239 -1.2109
6 6 2.9344 3.9953 -0.1015
7 6 2.7304 3.3997 1.1436
8 6 2.9955 4.1513 2.3887
9 8 2.2537 4.0265 3.3436
10 7 4.0565 4.9790 2.4634
11 6 4.8862 5.2150 1.2791
12 6 4.3803 5.6426 3.7286
13 6 4.8617 7.0953 3.5611
14 7 5.8766 6.7688 4.5849
15 6 6.5985 7.5026 5.4879
16 1 7.2219 7.0029 6.2146
17 6 6.5293 8.8889 5.4692
18 7 5.6954 9.4952 4.6509
19 14 7.6196 9.8940 6.6052
20 1 8.8503 10.2991 5.8796
21 1 6.8861 11.1059 7.0509
22 1 7.9891 9.0760 7.7883
23 6 5.7975 5.3348 4.2451
24 6 2.2653 2.0799 1.1939
25 1 -0.3634 0.5138 0.8899
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.8933 -0.5138 -0.8899
29 1 1.8933 -0.5138 0.8901
30 1 2.0839 1.5679 -2.1275
31 1 3.2886 5.0141 -0.1561
32 1 4.4453 6.0113 0.6795
33 1 5.8890 5.5074 1.5905
34 1 4.9415 4.3018 0.6864
35 1 3.6026 5.5223 4.4828
36 1 5.2820 7.3082 2.5782
37 1 4.1337 7.8394 3.8842
38 1 5.6468 10.4639 4.6381
39 1 5.8153 4.6760 5.1132
40 1 6.4933 5.0296 3.4635
41 1 2.0925 1.5893 2.1404
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001043352893.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:50:45
Heat of formation + Delta-G solvation = 63.792127 kcal
Electronic energy + Delta-G solvation = -22564.878807 eV
Core-core repulsion = 19254.093310 eV
Total energy + Delta-G solvation = -3310.785497 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.91134 -39.38398 -37.58209 -35.24396 -34.45263 -32.46280 -31.82805 -30.03201
-27.74909 -26.93698 -24.97267 -24.87125 -24.52841 -22.93867 -21.98186 -19.96431
-18.69922 -17.47171 -17.17689 -16.82746 -16.54980 -16.00093 -15.26935 -14.84047
-14.69461 -14.17408 -14.03225 -13.82444 -13.73892 -13.42794 -13.22931 -12.83490
-12.60256 -12.38937 -11.93135 -11.89736 -11.73450 -11.59756 -11.37025 -11.36040
-10.91559 -10.75667 -10.38189 -10.15522 -9.99114 -9.95273 -9.60967 -9.43092
-9.11875 -8.83991 -8.24331 -6.94842 -5.83980 -3.16226 0.59214 0.99934
2.79973 3.12124 3.37192 3.42448 3.44418 3.60598 4.13265 4.37361
4.42395 4.47682 4.66850 4.71010 4.74534 4.99814 5.07155 5.13341
5.21538 5.25799 5.36509 5.43596 5.48467 5.54085 5.59950 5.68668
5.79924 5.84638 5.87484 5.96025 6.04108 6.11277 6.37310 6.38669
6.52423 6.69079 7.14395 7.25415 7.46937 7.62784 7.67753 7.90589
8.28208 8.97970 9.64087 10.50996 11.33703
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.042846 B = 0.003075 C = 0.002984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 653.353977 B = 9102.912981 C = 9379.989475
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.079 4.079
3 C -0.143 4.143
4 C 0.114 3.886
5 N -0.484 5.484
6 C 0.119 3.881
7 C -0.170 4.170
8 C 0.558 3.442
9 O -0.537 6.537
10 N -0.590 5.590
11 C 0.069 3.931
12 C 0.088 3.912
13 C 0.160 3.840
14 N -0.605 5.605
15 C -0.225 4.225
16 H 0.082 0.918
17 C -0.005 4.005
18 N -0.918 5.918
19 Si 0.913 3.087
20 H -0.288 1.288
21 H -0.290 1.290
22 H -0.279 1.279
23 C 0.108 3.892
24 C -0.024 4.024
25 H 0.058 0.942
26 H 0.056 0.944
27 H 0.060 0.940
28 H 0.077 0.923
29 H 0.076 0.924
30 H 0.157 0.843
31 H 0.170 0.830
32 H 0.063 0.937
33 H 0.084 0.916
34 H 0.068 0.932
35 H 0.118 0.882
36 H 0.035 0.965
37 H 0.074 0.926
38 H 0.255 0.745
39 H 0.047 0.953
40 H 0.036 0.964
41 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.017 -17.228 -12.792 22.576
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.117 4.117
3 C -0.145 4.145
4 C -0.043 4.043
5 N -0.191 5.191
6 C -0.038 4.038
7 C -0.176 4.176
8 C 0.345 3.655
9 O -0.415 6.415
10 N -0.322 5.322
11 C -0.074 4.074
12 C -0.015 4.015
13 C 0.034 3.966
14 N -0.332 5.332
15 C -0.352 4.352
16 H 0.100 0.900
17 C -0.202 4.202
18 N -0.564 5.564
19 Si 0.743 3.257
20 H -0.215 1.215
21 H -0.216 1.216
22 H -0.205 1.205
23 C -0.019 4.019
24 C -0.050 4.050
25 H 0.077 0.923
26 H 0.075 0.925
27 H 0.079 0.921
28 H 0.095 0.905
29 H 0.094 0.906
30 H 0.174 0.826
31 H 0.187 0.813
32 H 0.081 0.919
33 H 0.103 0.897
34 H 0.086 0.914
35 H 0.136 0.864
36 H 0.053 0.947
37 H 0.092 0.908
38 H 0.065 0.935
39 H 0.066 0.934
40 H 0.054 0.946
41 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -7.127 -16.549 -12.905 22.163
hybrid contribution 0.622 0.305 1.235 1.416
sum -6.505 -16.244 -11.670 21.032
Atomic orbital electron populations
1.21778 0.94389 1.02002 1.02493 1.20473 0.96392 0.91417 1.03397
1.20873 1.01601 0.98191 0.93800 1.22835 0.93456 0.90499 0.97494
1.67760 1.12059 1.08396 1.30916 1.23482 0.93436 1.00356 0.86540
1.21077 1.04648 0.96398 0.95432 1.18144 0.81141 0.79492 0.86765
1.90778 1.46805 1.65523 1.38349 1.47959 1.27509 1.44361 1.12334
1.22143 0.96880 1.00802 0.87555 1.24167 0.97522 0.95479 0.84312
1.22628 0.90685 0.91292 0.92028 1.45678 1.47051 1.01358 1.39122
1.18993 1.20456 0.88025 1.07768 0.89978 1.24843 0.99663 0.96241
0.99489 1.69833 1.38043 1.08409 1.40151 0.86085 0.79918 0.79851
0.79842 1.21549 1.21617 1.20477 1.22980 0.93058 0.88866 0.96977
1.21537 0.92111 0.92537 0.98823 0.92321 0.92455 0.92082 0.90488
0.90580 0.82617 0.81324 0.91907 0.89703 0.91391 0.86441 0.94729
0.90759 0.93489 0.93437 0.94620 0.84083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.93 9.89 37.15 0.37 -0.57 16
2 C -0.08 -0.51 6.08 -27.89 -0.17 -0.68 16
3 C -0.14 -1.32 5.15 -104.54 -0.54 -1.86 16
4 C 0.11 1.09 10.85 -17.47 -0.19 0.90 16
5 N -0.48 -5.66 10.35 -12.91 -0.13 -5.80 16
6 C 0.12 1.44 8.75 -17.13 -0.15 1.29 16
7 C -0.17 -2.26 5.26 -104.82 -0.55 -2.81 16
8 C 0.56 9.16 7.38 -12.34 -0.09 9.07 16
9 O -0.54 -10.64 16.40 5.31 0.09 -10.55 16
10 N -0.59 -9.56 3.09 -176.85 -0.55 -10.11 16
11 C 0.07 0.89 7.56 59.85 0.45 1.34 16
12 C 0.09 1.74 4.41 -70.14 -0.31 1.43 16
13 C 0.16 3.69 6.85 -2.84 -0.02 3.67 16
14 N -0.61 -15.40 3.70 -177.87 -0.66 -16.06 16
15 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16
16 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16
17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16
18 N -0.92 -26.94 11.50 55.49 0.64 -26.30 16
19 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16
20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16
23 C 0.11 2.22 8.44 -2.97 -0.03 2.20 16
24 C -0.02 -0.27 9.47 -38.87 -0.37 -0.64 16
25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
28 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16
29 H 0.08 0.46 8.09 -51.92 -0.42 0.04 16
30 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16
31 H 0.17 1.84 5.27 -52.49 -0.28 1.56 16
32 H 0.06 0.72 6.89 -51.93 -0.36 0.36 16
33 H 0.08 1.17 6.17 -51.93 -0.32 0.85 16
34 H 0.07 0.75 5.82 -51.93 -0.30 0.44 16
35 H 0.12 2.51 7.20 -51.92 -0.37 2.14 16
36 H 0.04 0.78 6.72 -51.93 -0.35 0.43 16
37 H 0.07 1.93 7.35 -51.93 -0.38 1.55 16
38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
40 H 0.04 0.69 6.91 -51.93 -0.36 0.33 16
41 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16
LS Contribution 335.57 15.07 5.06 5.06
Total: -1.00 -32.89 335.57 -8.07 -40.96
By element:
Atomic # 1 Polarization: 4.84 SS G_CDS: -5.64 Total: -0.80 kcal
Atomic # 6 Polarization: 8.51 SS G_CDS: -1.85 Total: 6.67 kcal
Atomic # 7 Polarization: -57.57 SS G_CDS: -0.70 Total: -58.27 kcal
Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -32.89 -8.07 -40.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001043352893.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.753 kcal
(2) G-P(sol) polarization free energy of solvation -32.887 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds