Wall clock time and date at job start Tue Mar 31 2020 02:50:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.50696 * 109.47230 * 2 1
4 4 C 1.38359 * 120.34937 * 270.02230 * 3 2 1
5 5 N 1.31922 * 121.08257 * 179.97438 * 4 3 2
6 6 C 1.31700 * 121.87946 * 359.65857 * 5 4 3
7 7 C 1.39522 * 120.56379 * 0.62902 * 6 5 4
8 8 C 1.47833 * 120.55794 * 179.68406 * 7 6 5
9 9 O 1.21559 * 120.00087 * 141.03120 * 8 7 6
10 10 N 1.34770 * 120.00326 * 321.30884 * 8 7 6
11 11 C 1.46507 * 119.99835 * 4.79404 * 10 8 7
12 12 C 1.46494 * 120.00563 * 184.79959 * 10 8 7
13 13 C 1.53951 * 113.74511 * 218.73848 * 12 10 8
14 14 N 1.47809 * 86.03805 * 222.08261 * 13 12 10
15 15 C 1.36931 * 134.45569 * 204.64909 * 14 13 12
16 16 H 1.08003 * 120.00556 * 173.66756 * 15 14 13
17 17 C 1.38814 * 120.00248 * 353.66020 * 15 14 13
18 18 N 1.31624 * 119.99554 * 5.04588 * 17 15 14
19 19 Si 1.86805 * 120.00325 * 185.05178 * 17 15 14
20 20 H 1.48493 * 109.47054 * 94.98839 * 19 17 15
21 21 H 1.48502 * 109.46792 * 214.99020 * 19 17 15
22 22 H 1.48502 * 109.46871 * 334.98855 * 19 17 15
23 23 C 1.47582 * 91.05076 * 24.54642 * 14 13 12
24 24 C 1.38353 * 120.35137 * 89.99697 * 3 2 1
25 25 H 1.08999 * 109.47418 * 300.00189 * 1 2 3
26 26 H 1.09004 * 109.47401 * 60.00319 * 1 2 3
27 27 H 1.09006 * 109.47087 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47418 * 239.99811 * 2 1 3
29 29 H 1.09008 * 109.46925 * 119.99700 * 2 1 3
30 30 H 1.08000 * 119.45916 * 359.97438 * 4 3 2
31 31 H 1.07994 * 119.71631 * 180.33443 * 6 5 4
32 32 H 1.09000 * 109.46970 * 85.30141 * 11 10 8
33 33 H 1.09001 * 109.47178 * 205.30000 * 11 10 8
34 34 H 1.09005 * 109.47128 * 325.30327 * 11 10 8
35 35 H 1.09007 * 112.94404 * 350.32721 * 12 10 8
36 36 H 1.09001 * 113.76379 * 336.34567 * 13 12 10
37 37 H 1.08997 * 113.76996 * 107.74370 * 13 12 10
38 38 H 0.97005 * 119.99546 * 179.97438 * 18 17 15
39 39 H 1.09001 * 113.76624 * 221.15111 * 23 14 13
40 40 H 1.09000 * 113.76667 * 89.75904 * 23 14 13
41 41 H 1.08003 * 120.85703 * 0.04260 * 24 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2649 2.0800 -1.1940
5 7 2.7041 3.3239 -1.2109
6 6 2.9344 3.9953 -0.1015
7 6 2.7304 3.3997 1.1436
8 6 2.9955 4.1513 2.3887
9 8 2.2537 4.0265 3.3436
10 7 4.0565 4.9790 2.4634
11 6 4.8862 5.2150 1.2791
12 6 4.3803 5.6426 3.7286
13 6 4.8617 7.0953 3.5611
14 7 5.8766 6.7688 4.5849
15 6 6.5985 7.5026 5.4879
16 1 7.2219 7.0029 6.2146
17 6 6.5293 8.8889 5.4692
18 7 5.6954 9.4952 4.6509
19 14 7.6196 9.8940 6.6052
20 1 8.8503 10.2991 5.8796
21 1 6.8861 11.1059 7.0509
22 1 7.9891 9.0760 7.7883
23 6 5.7975 5.3348 4.2451
24 6 2.2653 2.0799 1.1939
25 1 -0.3634 0.5138 0.8899
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.8933 -0.5138 -0.8899
29 1 1.8933 -0.5138 0.8901
30 1 2.0839 1.5679 -2.1275
31 1 3.2886 5.0141 -0.1561
32 1 4.4453 6.0113 0.6795
33 1 5.8890 5.5074 1.5905
34 1 4.9415 4.3018 0.6864
35 1 3.6026 5.5223 4.4828
36 1 5.2820 7.3082 2.5782
37 1 4.1337 7.8394 3.8842
38 1 5.6468 10.4639 4.6381
39 1 5.8153 4.6760 5.1132
40 1 6.4933 5.0296 3.4635
41 1 2.0925 1.5893 2.1404
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001043352893.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:50:45
Heat of formation + Delta-G solvation = 42.707240 kcal
Electronic energy + Delta-G solvation = -22565.793116 eV
Core-core repulsion = 19254.093310 eV
Total energy + Delta-G solvation = -3311.699806 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.96901 -40.65572 -39.17219 -36.30144 -35.52830 -34.14747 -33.10699 -30.82011
-29.54472 -28.17473 -26.66275 -26.22570 -25.27551 -24.42779 -22.89531 -21.32586
-20.18850 -18.89548 -18.48817 -18.05330 -17.59956 -17.33993 -16.91018 -16.38513
-15.77418 -15.49757 -15.22317 -14.79544 -14.66969 -14.60648 -14.28707 -14.02064
-13.71383 -13.66722 -13.32719 -13.23699 -13.10474 -12.85421 -12.81472 -12.59847
-12.42666 -12.12806 -11.98395 -11.86844 -11.58368 -11.25432 -10.89593 -10.86429
-10.44096 -9.94729 -9.66835 -8.97673 -7.95942 -5.29628 -0.31486 0.15144
1.45545 1.47220 1.56328 1.58176 1.83193 2.46837 2.70983 3.17669
3.26060 3.41020 3.49983 3.71884 3.79229 3.81537 3.91744 4.08019
4.14759 4.27055 4.31817 4.44364 4.50637 4.55782 4.58524 4.68143
4.80630 4.84585 4.87075 4.95806 4.98250 5.13418 5.13965 5.17184
5.34190 5.39348 5.44604 5.57882 5.62327 5.85924 6.29579 6.82367
6.86505 6.97638 7.54814 8.48270 9.21723
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.042846 B = 0.003075 C = 0.002984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 653.353977 B = 9102.912981 C = 9379.989475
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.077 4.077
3 C -0.132 4.132
4 C 0.120 3.880
5 N -0.497 5.497
6 C 0.119 3.881
7 C -0.187 4.187
8 C 0.559 3.441
9 O -0.579 6.579
10 N -0.590 5.590
11 C 0.067 3.933
12 C 0.113 3.887
13 C 0.164 3.836
14 N -0.636 5.636
15 C -0.237 4.237
16 H 0.087 0.913
17 C -0.064 4.064
18 N -0.951 5.951
19 Si 0.981 3.019
20 H -0.284 1.284
21 H -0.295 1.295
22 H -0.267 1.267
23 C 0.116 3.884
24 C -0.033 4.033
25 H 0.041 0.959
26 H 0.059 0.941
27 H 0.076 0.924
28 H 0.101 0.899
29 H 0.080 0.920
30 H 0.191 0.809
31 H 0.176 0.824
32 H 0.078 0.922
33 H 0.078 0.922
34 H 0.092 0.908
35 H 0.096 0.904
36 H 0.042 0.958
37 H 0.036 0.964
38 H 0.251 0.749
39 H 0.053 0.947
40 H 0.060 0.940
41 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.560 -19.320 -14.562 25.067
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.114 4.114
3 C -0.134 4.134
4 C -0.037 4.037
5 N -0.205 5.205
6 C -0.038 4.038
7 C -0.192 4.192
8 C 0.348 3.652
9 O -0.460 6.460
10 N -0.320 5.320
11 C -0.074 4.074
12 C 0.008 3.992
13 C 0.038 3.962
14 N -0.363 5.363
15 C -0.366 4.366
16 H 0.104 0.896
17 C -0.257 4.257
18 N -0.599 5.599
19 Si 0.809 3.191
20 H -0.211 1.211
21 H -0.221 1.221
22 H -0.192 1.192
23 C -0.010 4.010
24 C -0.059 4.059
25 H 0.060 0.940
26 H 0.078 0.922
27 H 0.095 0.905
28 H 0.120 0.880
29 H 0.098 0.902
30 H 0.208 0.792
31 H 0.193 0.807
32 H 0.096 0.904
33 H 0.096 0.904
34 H 0.111 0.889
35 H 0.114 0.886
36 H 0.060 0.940
37 H 0.055 0.945
38 H 0.060 0.940
39 H 0.071 0.929
40 H 0.078 0.922
41 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -6.656 -18.682 -14.705 24.689
hybrid contribution 0.405 0.820 1.698 1.929
sum -6.250 -17.862 -13.007 22.963
Atomic orbital electron populations
1.21779 0.94199 1.02845 1.01805 1.20564 0.96374 0.89618 1.04876
1.21154 1.00195 0.99372 0.92713 1.23451 0.91510 0.89780 0.98936
1.67838 1.12751 1.09470 1.30441 1.23527 0.93420 1.00708 0.86128
1.20803 1.07247 0.97050 0.94109 1.18617 0.80179 0.78967 0.87405
1.90750 1.48192 1.66822 1.40240 1.47878 1.28113 1.44014 1.11997
1.22345 0.95917 1.02638 0.86505 1.23435 0.96652 0.93545 0.85546
1.22495 0.89714 0.92311 0.91681 1.45979 1.47468 1.03475 1.39371
1.19377 1.20152 0.88710 1.08311 0.89574 1.25689 1.01170 0.97363
1.01484 1.70013 1.39648 1.08163 1.42048 0.85025 0.77889 0.77921
0.78279 1.21117 1.22132 1.19181 1.23070 0.93626 0.86568 0.97729
1.21682 0.92164 0.92133 0.99905 0.93958 0.92218 0.90529 0.88010
0.90164 0.79214 0.80679 0.90377 0.90364 0.88936 0.88557 0.94021
0.94527 0.94049 0.92858 0.92200 0.84302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.47 9.89 71.98 0.71 -0.76 16
2 C -0.08 -0.74 6.08 29.84 0.18 -0.56 16
3 C -0.13 -2.09 5.15 -19.81 -0.10 -2.20 16
4 C 0.12 1.88 10.85 84.71 0.92 2.80 16
5 N -0.50 -10.34 10.35 -194.75 -2.01 -12.36 16
6 C 0.12 2.67 8.75 85.02 0.74 3.41 16
7 C -0.19 -4.79 5.26 -19.99 -0.11 -4.89 16
8 C 0.56 18.47 7.38 86.78 0.64 19.11 16
9 O -0.58 -23.67 16.40 -3.90 -0.06 -23.74 16
10 N -0.59 -19.02 3.09 -831.71 -2.57 -21.59 16
11 C 0.07 1.65 7.56 127.77 0.97 2.61 16
12 C 0.11 4.54 4.41 46.75 0.21 4.75 16
13 C 0.16 7.81 6.85 86.44 0.59 8.40 16
14 N -0.64 -32.83 3.70 -716.65 -2.65 -35.48 16
15 C -0.24 -13.37 10.70 84.03 0.90 -12.47 16
16 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16
17 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16
18 N -0.95 -57.29 11.50 21.65 0.25 -57.04 16
19 Si 0.98 45.65 29.56 68.60 2.03 47.67 16
20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16
21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16
23 C 0.12 4.73 8.44 86.48 0.73 5.46 16
24 C -0.03 -0.71 9.47 22.73 0.22 -0.49 16
25 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16
26 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16
27 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16
28 H 0.10 0.54 8.09 -2.39 -0.02 0.52 16
29 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16
30 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16
31 H 0.18 3.53 5.27 -2.91 -0.02 3.52 16
32 H 0.08 1.69 6.89 -2.39 -0.02 1.67 16
33 H 0.08 2.04 6.17 -2.39 -0.01 2.03 16
34 H 0.09 1.84 5.82 -2.38 -0.01 1.82 16
35 H 0.10 4.31 7.20 -2.38 -0.02 4.29 16
36 H 0.04 1.91 6.72 -2.39 -0.02 1.90 16
37 H 0.04 2.00 7.35 -2.39 -0.02 1.98 16
38 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16
39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16
40 H 0.06 2.20 6.91 -2.39 -0.02 2.19 16
41 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16
Total: -1.00 -72.59 335.57 3.07 -69.51
By element:
Atomic # 1 Polarization: 9.97 SS G_CDS: 1.04 Total: 11.00 kcal
Atomic # 6 Polarization: 14.95 SS G_CDS: 7.06 Total: 22.02 kcal
Atomic # 7 Polarization: -119.48 SS G_CDS: -6.99 Total: -126.47 kcal
Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.74 kcal
Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal
Total: -72.59 3.07 -69.51 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001043352893.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.218 kcal
(2) G-P(sol) polarization free energy of solvation -72.586 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds