Wall clock time and date at job start Tue Mar 31 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47081 * 2 1 4 4 C 1.50691 * 109.47047 * 240.00059 * 2 1 3 5 5 O 1.21287 * 120.00018 * 255.51608 * 4 2 1 6 6 N 1.34779 * 120.00666 * 75.51556 * 4 2 1 7 7 C 1.46492 * 120.00617 * 183.81173 * 6 4 2 8 8 C 1.46500 * 119.99368 * 3.81260 * 6 4 2 9 9 C 1.53944 * 113.74076 * 211.41536 * 8 6 4 10 10 N 1.47816 * 86.03711 * 222.08615 * 9 8 6 11 11 C 1.36934 * 134.45517 * 204.64655 * 10 9 8 12 12 H 1.08001 * 119.99740 * 183.98212 * 11 10 9 13 13 C 1.38807 * 120.00568 * 3.97419 * 11 10 9 14 14 N 1.31631 * 119.99559 * 6.29540 * 13 11 10 15 15 Si 1.86794 * 120.00688 * 186.29072 * 13 11 10 16 16 H 1.48500 * 109.47443 * 94.97334 * 15 13 11 17 17 H 1.48499 * 109.47507 * 214.97793 * 15 13 11 18 18 H 1.48505 * 109.46829 * 334.97556 * 15 13 11 19 19 C 1.47578 * 91.05030 * 24.54824 * 10 9 8 20 20 C 1.50698 * 109.47536 * 119.99515 * 2 1 3 21 21 C 1.38673 * 120.42127 * 240.00259 * 20 2 1 22 22 C 1.38630 * 118.41768 * 179.97438 * 21 20 2 23 23 C 1.38229 * 119.16260 * 0.02562 * 22 21 20 24 24 N 1.31852 * 120.76429 * 0.02562 * 23 22 21 25 25 C 1.31888 * 121.72520 * 359.70109 * 24 23 22 26 26 H 1.08996 * 109.47397 * 174.51221 * 1 2 3 27 27 H 1.09001 * 109.47494 * 54.49802 * 1 2 3 28 28 H 1.09008 * 109.46940 * 294.50515 * 1 2 3 29 29 H 1.09003 * 109.47526 * 93.38987 * 7 6 4 30 30 H 1.08993 * 109.47733 * 213.39401 * 7 6 4 31 31 H 1.09004 * 109.47215 * 333.39493 * 7 6 4 32 32 H 1.09000 * 112.94536 * 343.00985 * 8 6 4 33 33 H 1.08996 * 113.77052 * 336.34913 * 9 8 6 34 34 H 1.08995 * 113.77081 * 107.74770 * 9 8 6 35 35 H 0.97001 * 119.99660 * 179.97438 * 14 13 11 36 36 H 1.09002 * 113.77208 * 221.15132 * 19 10 9 37 37 H 1.09002 * 113.76895 * 89.75845 * 19 10 9 38 38 H 1.07991 * 120.78881 * 359.97438 * 21 20 2 39 39 H 1.07997 * 120.41699 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.61349 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.61694 * 180.31992 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.4821 -1.8332 -1.1412 6 7 1.9817 -0.0981 -2.4300 7 6 2.3919 -0.8183 -3.6380 8 6 1.5165 1.2878 -2.5259 9 6 0.7992 1.6106 -3.8492 10 7 1.5546 2.8810 -3.8300 11 6 1.3583 4.1219 -4.3747 12 1 2.1124 4.8867 -4.2617 13 6 0.1902 4.3968 -5.0724 14 7 -0.7810 3.5089 -5.1055 15 14 -0.0037 6.0266 -5.9642 16 1 0.3883 5.8621 -7.3870 17 1 -1.4199 6.4669 -5.8886 18 1 0.8665 7.0467 -5.3257 19 6 2.6035 2.2760 -2.9863 20 6 2.0324 -0.7103 1.2305 21 6 2.8302 -0.0446 2.1489 22 6 3.2688 -0.7379 3.2664 23 6 2.8995 -2.0602 3.4267 24 7 2.1402 -2.6616 2.5320 25 6 1.7004 -2.0319 1.4599 26 1 -0.3634 -1.0229 -0.0983 27 1 -0.3634 0.5968 -0.8366 28 1 -0.3633 0.4263 0.9352 29 1 1.5191 -1.2797 -4.1000 30 1 2.8482 -0.1204 -4.3399 31 1 3.1136 -1.5909 -3.3729 32 1 0.9722 1.6155 -1.6403 33 1 1.0736 0.9487 -4.6705 34 1 -0.2784 1.7373 -3.7453 35 1 -1.5974 3.7011 -5.5927 36 1 2.9638 2.9329 -2.1946 37 1 3.4092 1.8100 -3.5536 38 1 3.1032 0.9891 1.9972 39 1 3.8912 -0.2509 4.0025 40 1 3.2374 -2.6073 4.2944 41 1 1.0762 -2.5561 0.7515 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044199021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:53 Heat of formation + Delta-G solvation = 62.712586 kcal Electronic energy + Delta-G solvation = -23085.399175 eV Core-core repulsion = 19774.566865 eV Total energy + Delta-G solvation = -3310.832309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.72376 -39.56081 -37.84380 -34.63025 -34.22090 -32.16819 -31.95936 -29.93071 -27.74480 -27.00510 -24.93583 -24.76167 -23.58211 -23.35665 -21.98292 -19.93219 -18.52075 -17.40347 -17.11157 -16.82014 -15.98944 -15.95321 -15.29905 -14.83095 -14.70166 -14.26960 -13.95055 -13.79749 -13.53175 -13.22869 -13.10015 -12.65240 -12.56792 -12.28148 -12.01683 -11.74412 -11.59058 -11.52657 -11.38813 -11.28048 -10.94287 -10.82982 -10.40405 -10.14843 -9.90737 -9.68946 -9.46394 -9.41093 -8.98106 -8.92264 -8.23105 -7.01821 -5.88814 -3.23481 1.07902 1.25897 2.77941 3.22172 3.32626 3.38494 3.39809 3.82626 4.33139 4.35647 4.57645 4.64448 4.80850 4.92610 5.00132 5.05886 5.14546 5.20973 5.26835 5.38935 5.46961 5.59426 5.61134 5.74090 5.77944 5.80894 5.84726 5.98020 6.04576 6.07417 6.14756 6.27883 6.31192 6.40229 6.66787 6.76774 7.01031 7.13121 7.39952 7.70680 7.85296 7.97254 8.36367 8.91114 9.58094 10.43109 11.26796 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029426 B = 0.003602 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.321134 B = 7771.631223 C = 8096.595512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 H 0.105 0.895 4 C 0.519 3.481 5 O -0.548 6.548 6 N -0.595 5.595 7 C 0.086 3.914 8 C 0.076 3.924 9 C 0.150 3.850 10 N -0.605 5.605 11 C -0.226 4.226 12 H 0.082 0.918 13 C -0.005 4.005 14 N -0.917 5.917 15 Si 0.913 3.087 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.279 1.279 19 C 0.107 3.893 20 C -0.117 4.117 21 C -0.070 4.070 22 C -0.179 4.179 23 C 0.092 3.908 24 N -0.489 5.489 25 C 0.138 3.862 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.255 0.745 36 H 0.047 0.953 37 H 0.038 0.962 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 -7.202 12.942 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 H 0.123 0.877 4 C 0.306 3.694 5 O -0.426 6.426 6 N -0.327 5.327 7 C -0.057 4.057 8 C -0.028 4.028 9 C 0.024 3.976 10 N -0.332 5.332 11 C -0.353 4.353 12 H 0.099 0.901 13 C -0.202 4.202 14 N -0.564 5.564 15 Si 0.743 3.257 16 H -0.216 1.216 17 H -0.216 1.216 18 H -0.205 1.205 19 C -0.021 4.021 20 C -0.120 4.120 21 C -0.096 4.096 22 C -0.199 4.199 23 C -0.065 4.065 24 N -0.198 5.198 25 C -0.019 4.019 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.524 -8.411 12.915 16.063 hybrid contribution 0.251 1.925 -0.881 2.131 sum 4.775 -6.487 12.035 14.481 Atomic orbital electron populations 1.21847 0.91297 1.03310 1.03627 1.20215 0.98237 1.00285 0.90291 0.87725 1.20362 0.78249 0.86261 0.84512 1.90672 1.46499 1.19452 1.85990 1.47986 1.63962 1.14216 1.06523 1.21601 1.00303 0.97015 0.86739 1.24268 0.98166 0.78282 1.02067 1.22762 0.99032 0.85667 0.90119 1.45682 1.21415 1.06895 1.59222 1.18987 1.01686 0.86534 1.28104 0.90071 1.24788 0.95989 0.98398 1.00991 1.69808 1.06108 1.34786 1.45654 0.86085 0.77155 0.82663 0.79757 1.21582 1.21594 1.20486 1.23003 0.92788 0.92732 0.93529 1.20428 0.99351 0.96018 0.96165 1.21506 0.94661 1.00218 0.93190 1.22061 1.02372 0.96351 0.99086 1.22747 0.94014 0.92323 0.97427 1.67734 1.10616 1.38558 1.02854 1.22595 0.95508 0.90870 0.92912 0.91792 0.90379 0.91211 0.92650 0.90932 0.90929 0.86894 0.94910 0.89574 0.93492 0.93477 0.94448 0.84824 0.84943 0.83092 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.64 37.16 0.32 -1.31 16 2 C -0.07 -0.86 2.05 -92.93 -0.19 -1.05 16 3 H 0.10 1.22 6.87 -51.93 -0.36 0.86 16 4 C 0.52 7.99 6.83 -10.99 -0.08 7.92 16 5 O -0.55 -9.83 14.21 5.55 0.08 -9.75 16 6 N -0.60 -9.28 3.08 -175.75 -0.54 -9.82 16 7 C 0.09 1.27 9.07 59.84 0.54 1.82 16 8 C 0.08 1.29 3.68 -70.14 -0.26 1.03 16 9 C 0.15 3.21 7.10 -2.84 -0.02 3.19 16 10 N -0.61 -14.39 3.70 -177.88 -0.66 -15.05 16 11 C -0.23 -5.98 10.69 -15.06 -0.16 -6.14 16 12 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 13 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 14 N -0.92 -25.68 11.31 55.49 0.63 -25.05 16 15 Si 0.91 21.19 29.56 -169.99 -5.02 16.16 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C 0.11 2.01 8.50 -2.97 -0.03 1.98 16 20 C -0.12 -1.50 4.56 -104.48 -0.48 -1.97 16 21 C -0.07 -0.77 9.81 -39.28 -0.39 -1.15 16 22 C -0.18 -1.78 10.11 -39.44 -0.40 -2.17 16 23 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 24 N -0.49 -6.81 10.36 -13.25 -0.14 -6.94 16 25 C 0.14 1.93 9.09 -17.55 -0.16 1.77 16 26 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 27 H 0.08 0.95 6.40 -51.93 -0.33 0.62 16 28 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.08 6.57 -51.93 -0.34 0.74 16 31 H 0.07 1.06 7.28 -51.93 -0.38 0.68 16 32 H 0.11 1.78 4.81 -51.93 -0.25 1.53 16 33 H 0.03 0.71 6.51 -51.93 -0.34 0.37 16 34 H 0.09 2.06 6.88 -51.93 -0.36 1.70 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.70 7.31 -51.93 -0.38 0.32 16 38 H 0.13 1.18 8.00 -52.49 -0.42 0.76 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.15 2.15 7.22 -52.49 -0.38 1.77 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -31.44 332.50 -7.81 -39.25 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.59 Total: 1.69 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.58 Total: 4.50 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.71 Total: -56.86 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.44 -7.81 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044199021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.958 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds