Wall clock time and date at job start Tue Mar 31 2020 02:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38355 * 119.45810 * 2 1 4 4 C 1.38361 * 119.29600 * 179.70428 * 3 2 1 5 5 C 1.40019 * 118.29261 * 0.53542 * 4 3 2 6 6 C 1.47837 * 120.55870 * 179.73293 * 5 4 3 7 7 O 1.21554 * 120.00081 * 229.37991 * 6 5 4 8 8 N 1.34779 * 119.99823 * 49.39265 * 6 5 4 9 9 C 1.46499 * 120.00070 * 355.10581 * 8 6 5 10 10 C 1.46501 * 120.00091 * 175.11532 * 8 6 5 11 11 C 1.53498 * 114.20733 * 239.99387 * 10 8 6 12 12 N 1.47066 * 87.98568 * 220.14779 * 11 10 8 13 13 C 1.36939 * 136.05349 * 207.08715 * 12 11 10 14 14 H 1.08001 * 120.00073 * 5.76780 * 13 12 11 15 15 C 1.38811 * 119.99729 * 185.77077 * 13 12 11 16 16 N 1.31612 * 119.99933 * 201.98945 * 15 13 12 17 17 Si 1.86797 * 120.00056 * 21.98392 * 15 13 12 18 18 H 1.48498 * 109.47456 * 270.00411 * 17 15 13 19 19 H 1.48507 * 109.46994 * 30.00330 * 17 15 13 20 20 H 1.48500 * 109.47343 * 150.00004 * 17 15 13 21 21 C 1.47067 * 87.88710 * 27.34070 * 12 11 10 22 22 C 1.39521 * 118.88148 * 359.46507 * 5 4 3 23 23 C 1.50702 * 119.71836 * 180.24745 * 22 5 4 24 24 N 1.31690 * 120.56751 * 0.27622 * 22 5 4 25 25 H 1.09000 * 109.46568 * 270.01906 * 1 2 3 26 26 H 1.09000 * 109.47522 * 30.01714 * 1 2 3 27 27 H 1.08992 * 109.47368 * 150.02381 * 1 2 3 28 28 H 1.07992 * 120.34988 * 0.02562 * 3 2 1 29 29 H 1.08005 * 120.85148 * 180.29854 * 4 3 2 30 30 H 1.08996 * 109.47462 * 274.90372 * 9 8 6 31 31 H 1.09001 * 109.46795 * 34.90721 * 9 8 6 32 32 H 1.08996 * 109.47010 * 154.90225 * 9 8 6 33 33 H 1.09002 * 113.27998 * 13.06041 * 10 8 6 34 34 H 1.09002 * 113.46282 * 105.36346 * 11 10 8 35 35 H 1.08999 * 113.46524 * 334.92812 * 11 10 8 36 36 H 0.96998 * 120.00230 * 354.96095 * 16 15 13 37 37 H 1.09003 * 113.46592 * 87.43235 * 21 12 11 38 38 H 1.08997 * 113.46748 * 217.87633 * 21 12 11 39 39 H 1.09000 * 109.46864 * 93.85809 * 23 22 5 40 40 H 1.08997 * 109.47083 * 213.85888 * 23 22 5 41 41 H 1.09004 * 109.47176 * 333.85923 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2008 0.0062 5 6 4.2312 -0.0340 0.0008 6 6 5.7083 -0.0966 0.0011 7 8 6.2868 -0.8033 -0.8009 8 7 6.4133 0.6298 0.8909 9 6 5.7235 1.5622 1.7859 10 6 7.8696 0.4873 0.9630 11 6 8.3893 0.0184 2.3291 12 7 9.4996 0.9704 2.1754 13 6 10.7887 1.0631 2.6280 14 1 11.2235 0.2498 3.1901 15 6 11.5365 2.2024 2.3644 16 7 12.8512 2.1485 2.3958 17 14 10.6771 3.8121 1.9649 18 1 10.4684 3.9112 0.4980 19 1 9.3633 3.8565 2.6558 20 1 11.5161 4.9484 2.4234 21 6 8.6141 1.7824 1.3271 22 6 3.4716 -1.2043 0.0008 23 6 4.1627 -2.5435 0.0007 24 7 2.1559 -1.1487 0.0004 25 1 -0.3632 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6443 2.1381 0.0004 29 1 4.1275 2.1264 0.0112 30 1 5.5829 2.5164 1.2783 31 1 4.7524 1.1504 2.0611 32 1 6.3218 1.7133 2.6844 33 1 8.2921 -0.0518 0.1150 34 1 8.7089 -1.0237 2.3375 35 1 7.7203 0.2613 3.1546 36 1 13.2967 1.3331 2.6742 37 1 8.0044 2.4902 1.8885 38 1 9.1255 2.2431 0.4819 39 1 4.2680 -2.8981 1.0260 40 1 3.5709 -3.2577 -0.5719 41 1 5.1491 -2.4433 -0.4522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044326856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:21 Heat of formation + Delta-G solvation = 46.118608 kcal Electronic energy + Delta-G solvation = -22977.630252 eV Core-core repulsion = 19666.078374 eV Total energy + Delta-G solvation = -3311.551878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07353 -40.87187 -39.43466 -36.26890 -34.67667 -34.49798 -33.63761 -30.12268 -29.95756 -28.42676 -27.88443 -26.96629 -24.92160 -23.63030 -23.14027 -21.65579 -20.45068 -19.55505 -18.52220 -18.05545 -17.53846 -16.96745 -16.57127 -16.43966 -15.85068 -15.58613 -15.47990 -15.32452 -14.64623 -14.54999 -14.13844 -13.85425 -13.67441 -13.60732 -13.40895 -13.27608 -13.14157 -13.08549 -13.03164 -12.92759 -12.71445 -12.53891 -12.02005 -11.68567 -11.37225 -11.20017 -10.81672 -10.76713 -10.45762 -9.82563 -9.67983 -9.30775 -8.68647 -5.48965 -0.27552 0.20069 1.39379 1.46877 1.51789 1.66761 1.78616 2.53284 2.64955 2.97712 3.11248 3.15540 3.38575 3.51905 3.69258 3.74226 4.04258 4.06472 4.18054 4.21125 4.39942 4.49367 4.53970 4.55709 4.56749 4.61219 4.64425 4.69545 4.75813 4.83325 4.86737 4.99150 5.00832 5.08727 5.14183 5.17949 5.25093 5.49179 5.66919 5.91572 6.25001 6.65003 6.91088 6.96986 7.29184 8.21644 8.83394 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.003768 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.317626 B = 7428.879485 C = 7961.626665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.138 3.862 3 C -0.174 4.174 4 C -0.035 4.035 5 C -0.202 4.202 6 C 0.567 3.433 7 O -0.569 6.569 8 N -0.589 5.589 9 C 0.063 3.937 10 C 0.125 3.875 11 C 0.110 3.890 12 N -0.647 5.647 13 C -0.301 4.301 14 H 0.050 0.950 15 C -0.079 4.079 16 N -0.959 5.959 17 Si 1.099 2.901 18 H -0.277 1.277 19 H -0.250 1.250 20 H -0.298 1.298 21 C 0.094 3.906 22 C 0.169 3.831 23 C -0.122 4.122 24 N -0.510 5.510 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.180 0.820 29 H 0.165 0.835 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.248 0.752 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.834 0.761 -3.434 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.001 3.999 3 C -0.193 4.193 4 C -0.061 4.061 5 C -0.207 4.207 6 C 0.356 3.644 7 O -0.449 6.449 8 N -0.320 5.320 9 C -0.078 4.078 10 C 0.019 3.981 11 C -0.017 4.017 12 N -0.375 5.375 13 C -0.428 4.428 14 H 0.068 0.932 15 C -0.272 4.272 16 N -0.603 5.603 17 Si 0.923 3.077 18 H -0.204 1.204 19 H -0.175 1.175 20 H -0.226 1.226 21 C -0.032 4.032 22 C 0.031 3.969 23 C -0.179 4.179 24 N -0.221 5.221 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.197 0.803 29 H 0.182 0.818 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -29.503 1.182 -4.161 29.818 hybrid contribution 1.318 -1.349 0.775 2.039 sum -28.185 -0.166 -3.386 28.388 Atomic orbital electron populations 1.20882 0.86121 1.04711 1.04407 1.22179 0.98872 0.88121 0.90773 1.22279 0.93836 1.00553 1.02623 1.22132 0.95385 0.96966 0.91572 1.20556 0.92711 0.96451 1.11012 1.18499 0.87222 0.78784 0.79849 1.90726 1.72063 1.42127 1.39978 1.47774 1.06182 1.41633 1.36439 1.22290 0.98097 0.93128 0.94320 1.22907 0.78704 0.97999 0.98459 1.22938 0.88437 0.94594 0.95727 1.45878 1.07821 1.26052 1.57775 1.19866 0.86055 1.02428 1.34500 0.93237 1.27147 0.95455 1.04610 1.00000 1.71025 1.08388 1.31346 1.49521 0.83314 0.75098 0.72064 0.77220 1.20354 1.17465 1.22562 1.23220 0.91123 0.94842 0.93981 1.21361 0.89180 0.95133 0.91276 1.20985 1.00955 0.92242 1.03747 1.67475 1.08475 1.30778 1.15409 0.88780 0.87835 0.90920 0.80284 0.81752 0.89471 0.89325 0.90211 0.87519 0.93963 0.91854 0.94281 0.90602 0.93329 0.89695 0.89617 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 71.24 0.72 -0.16 16 2 C 0.14 2.19 6.78 42.57 0.29 2.48 16 3 C -0.17 -2.11 9.72 22.33 0.22 -1.90 16 4 C -0.03 -0.56 7.92 22.73 0.18 -0.38 16 5 C -0.20 -4.75 4.89 -20.00 -0.10 -4.84 16 6 C 0.57 16.66 6.73 86.78 0.58 17.24 16 7 O -0.57 -21.10 14.31 -3.89 -0.06 -21.15 16 8 N -0.59 -16.13 3.12 -824.81 -2.57 -18.70 16 9 C 0.06 1.17 7.88 127.77 1.01 2.17 16 10 C 0.12 4.38 4.59 45.55 0.21 4.59 16 11 C 0.11 4.22 8.23 83.18 0.68 4.91 16 12 N -0.65 -31.21 3.62 -737.94 -2.67 -33.88 16 13 C -0.30 -17.61 10.97 84.03 0.92 -16.69 16 14 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 15 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 16 N -0.96 -61.95 13.70 21.65 0.30 -61.65 16 17 Si 1.10 51.64 25.57 68.60 1.75 53.39 16 18 H -0.28 -12.28 6.85 99.48 0.68 -11.60 16 19 H -0.25 -10.15 6.23 99.48 0.62 -9.53 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 21 C 0.09 3.66 5.10 83.27 0.42 4.08 16 22 C 0.17 4.15 6.82 42.89 0.29 4.45 16 23 C -0.12 -2.97 9.86 71.24 0.70 -2.26 16 24 N -0.51 -11.45 10.17 -171.05 -1.74 -13.19 16 25 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.10 0.35 8.07 -2.39 -0.02 0.33 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 29 H 0.17 1.83 6.43 -2.91 -0.02 1.81 16 30 H 0.09 1.17 7.14 -2.39 -0.02 1.15 16 31 H 0.09 1.33 6.25 -2.39 -0.01 1.32 16 32 H 0.08 1.58 5.98 -2.39 -0.01 1.56 16 33 H 0.11 4.25 7.26 -2.39 -0.02 4.23 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 2.16 7.04 -2.39 -0.02 2.14 16 36 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 37 H 0.08 2.56 5.61 -2.39 -0.01 2.54 16 38 H 0.05 2.01 6.41 -2.39 -0.02 1.99 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.31 5.38 -2.38 -0.01 2.30 16 Total: -1.00 -77.66 326.93 2.51 -75.14 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.89 Total: 10.59 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 6.60 Total: 9.44 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -6.68 Total: -127.42 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 1.75 Total: 53.39 kcal Total: -77.66 2.51 -75.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044326856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.261 kcal (2) G-P(sol) polarization free energy of solvation -77.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds