Wall clock time and date at job start Tue Mar 31 2020 02:48:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38402 * 120.85803 * 2 1
4 4 C 1.38314 * 119.30310 * 180.24437 * 3 2 1
5 5 N 1.31956 * 121.08278 * 359.47675 * 4 3 2
6 6 C 1.31664 * 121.87801 * 0.25219 * 5 4 3
7 7 C 1.39559 * 120.56829 * 0.02653 * 6 5 4
8 8 C 1.47846 * 120.56223 * 179.97438 * 7 6 5
9 9 O 1.21546 * 119.99892 * 173.90996 * 8 7 6
10 10 N 1.34776 * 119.99697 * 353.90349 * 8 7 6
11 11 C 1.46501 * 119.99731 * 180.02562 * 10 8 7
12 12 H 1.08996 * 110.88428 * 31.12474 * 11 10 8
13 13 C 1.54908 * 111.00442 * 267.20169 * 11 10 8
14 14 N 1.47427 * 104.82950 * 204.91889 * 13 11 10
15 15 C 1.36937 * 125.64475 * 204.15155 * 14 13 11
16 16 H 1.08001 * 119.99714 * 179.97438 * 15 14 13
17 17 C 1.38810 * 120.00335 * 359.96841 * 15 14 13
18 18 N 1.31618 * 120.00057 * 0.02562 * 17 15 14
19 19 Si 1.86807 * 120.00145 * 180.02562 * 17 15 14
20 20 H 1.48496 * 109.46880 * 0.02562 * 19 17 15
21 21 H 1.48498 * 109.47029 * 120.00309 * 19 17 15
22 22 H 1.48504 * 109.46798 * 240.00289 * 19 17 15
23 23 C 1.47017 * 108.70711 * 24.12549 * 14 13 11
24 24 C 1.54327 * 107.26895 * 358.94200 * 23 14 13
25 25 H 1.09006 * 110.87263 * 96.24050 * 24 23 14
26 26 C 1.52995 * 110.71978 * 219.44232 * 24 23 14
27 27 H 1.09005 * 109.46971 * 263.92977 * 1 2 3
28 28 H 1.09006 * 109.46721 * 23.92676 * 1 2 3
29 29 H 1.08997 * 109.47310 * 143.92591 * 1 2 3
30 30 H 1.07997 * 120.34551 * 0.02562 * 3 2 1
31 31 H 1.08000 * 119.45778 * 179.75515 * 4 3 2
32 32 H 1.08004 * 119.71669 * 179.97438 * 6 5 4
33 33 H 0.96996 * 120.00185 * 0.02562 * 10 8 7
34 34 H 1.08999 * 110.36551 * 323.75318 * 13 11 10
35 35 H 1.08998 * 110.37105 * 86.07844 * 13 11 10
36 36 H 0.97000 * 120.00359 * 179.97438 * 18 17 15
37 37 H 1.08998 * 109.88685 * 239.52345 * 23 14 13
38 38 H 1.08996 * 109.88492 * 118.35801 * 23 14 13
39 39 H 1.09006 * 109.47273 * 173.52353 * 26 24 23
40 40 H 1.08998 * 109.47164 * 293.51897 * 26 24 23
41 41 H 1.08999 * 109.47404 * 53.52495 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2168 1.1881 0.0000
4 6 3.5994 1.1506 -0.0051
5 7 4.2498 0.0024 0.0003
6 6 3.6197 -1.1536 0.0059
7 6 2.2249 -1.2017 0.0056
8 6 1.5175 -2.4999 0.0113
9 8 0.3076 -2.5322 0.1228
10 7 2.2143 -3.6475 -0.1072
11 6 1.5133 -4.9339 -0.1021
12 1 0.5174 -4.8354 -0.5341
13 6 1.4429 -5.5223 1.3291
14 7 1.3068 -6.9771 1.1328
15 6 0.7570 -7.8552 2.0282
16 1 0.7029 -8.9070 1.7892
17 6 0.2694 -7.3935 3.2431
18 7 0.3350 -6.1116 3.5342
19 14 -0.4800 -8.5915 4.4648
20 1 -0.4343 -9.9652 3.9026
21 1 0.2900 -8.5507 5.7339
22 1 -1.8909 -8.2110 4.7294
23 6 1.8585 -7.3288 -0.1838
24 6 2.3368 -6.0189 -0.8449
25 1 3.4046 -5.8701 -0.6841
26 6 2.0111 -6.0168 -2.3398
27 1 -0.3633 -0.1087 1.0220
28 1 -0.3633 0.9394 -0.4168
29 1 -0.3634 -0.8306 -0.6051
30 1 1.6966 2.1345 0.0004
31 1 4.1559 2.0762 -0.0092
32 1 4.1871 -2.0726 0.0098
33 1 3.1798 -3.6217 -0.1959
34 1 2.3579 -5.2975 1.8771
35 1 0.5758 -5.1282 1.8591
36 1 -0.0061 -5.7889 4.3829
37 1 1.0865 -7.7933 -0.7972
38 1 2.6994 -8.0116 -0.0629
39 1 2.2517 -5.0414 -2.7628
40 1 2.5998 -6.7852 -2.8410
41 1 0.9500 -6.2223 -2.4809
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001079522511.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:13
Heat of formation + Delta-G solvation = 25.505693 kcal
Electronic energy + Delta-G solvation = -23082.732614 eV
Core-core repulsion = 19770.286892 eV
Total energy + Delta-G solvation = -3312.445721 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.72200 -39.05587 -37.48449 -34.33758 -33.60739 -32.80666 -31.41258 -30.36717
-28.32872 -27.37453 -25.65320 -24.58261 -23.49971 -22.27214 -20.84347 -20.10764
-19.64031 -17.57780 -16.98030 -16.63526 -16.31080 -15.65755 -15.02599 -14.83354
-14.80586 -13.93112 -13.78241 -13.63802 -13.08631 -12.90632 -12.84247 -12.74398
-12.58431 -12.45001 -12.24031 -11.98643 -11.70630 -11.23526 -11.10066 -10.80383
-10.63612 -10.36536 -9.99889 -9.96920 -9.78348 -9.76492 -9.61301 -9.33157
-9.24232 -8.65511 -8.46713 -6.83934 -5.63450 -3.07065 0.59998 1.07388
3.02327 3.37141 3.41531 3.46398 3.49237 3.80146 4.17801 4.49649
4.55885 4.60650 4.77621 4.93420 5.11462 5.26657 5.30163 5.39544
5.43972 5.51529 5.54748 5.73411 5.74582 5.76747 5.94727 6.02242
6.06246 6.14102 6.21758 6.31436 6.37089 6.46180 6.51598 6.65923
6.77265 6.93306 7.43878 7.62561 7.71863 7.79520 7.90512 8.36893
8.49275 9.21619 9.82980 10.45927 11.39587
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.018626 B = 0.004303 C = 0.003856
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1502.928506 B = 6505.473775 C = 7260.427817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C 0.018 3.982
3 C -0.186 4.186
4 C 0.117 3.883
5 N -0.495 5.495
6 C 0.137 3.863
7 C -0.184 4.184
8 C 0.559 3.441
9 O -0.524 6.524
10 N -0.706 5.706
11 C 0.119 3.881
12 H 0.095 0.905
13 C 0.149 3.851
14 N -0.603 5.603
15 C -0.226 4.226
16 H 0.080 0.920
17 C -0.010 4.010
18 N -0.918 5.918
19 Si 0.914 3.086
20 H -0.280 1.280
21 H -0.291 1.291
22 H -0.290 1.290
23 C 0.141 3.859
24 C -0.112 4.112
25 H 0.074 0.926
26 C -0.137 4.137
27 H 0.084 0.916
28 H 0.061 0.939
29 H 0.100 0.900
30 H 0.139 0.861
31 H 0.158 0.842
32 H 0.158 0.842
33 H 0.393 0.607
34 H 0.013 0.987
35 H 0.112 0.888
36 H 0.252 0.748
37 H 0.028 0.972
38 H 0.024 0.976
39 H 0.050 0.950
40 H 0.053 0.947
41 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.744 12.808 -10.475 17.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.010 3.990
3 C -0.206 4.206
4 C -0.039 4.039
5 N -0.204 5.204
6 C -0.022 4.022
7 C -0.189 4.189
8 C 0.345 3.655
9 O -0.401 6.401
10 N -0.356 5.356
11 C 0.014 3.986
12 H 0.113 0.887
13 C 0.023 3.977
14 N -0.329 5.329
15 C -0.354 4.354
16 H 0.097 0.903
17 C -0.205 4.205
18 N -0.567 5.567
19 Si 0.745 3.255
20 H -0.205 1.205
21 H -0.218 1.218
22 H -0.217 1.217
23 C 0.015 3.985
24 C -0.132 4.132
25 H 0.092 0.908
26 C -0.195 4.195
27 H 0.103 0.897
28 H 0.079 0.921
29 H 0.119 0.881
30 H 0.157 0.843
31 H 0.175 0.825
32 H 0.176 0.824
33 H 0.227 0.773
34 H 0.031 0.969
35 H 0.130 0.870
36 H 0.063 0.937
37 H 0.046 0.954
38 H 0.042 0.958
39 H 0.069 0.931
40 H 0.072 0.928
41 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 5.672 12.748 -10.186 17.276
hybrid contribution -0.558 -0.551 0.732 1.072
sum 5.114 12.198 -9.455 16.258
Atomic orbital electron populations
1.21109 0.89033 1.03378 1.04474 1.20532 0.97670 0.91318 0.89519
1.22062 0.95550 0.98646 1.04340 1.22918 0.91771 0.96376 0.92828
1.67683 1.40874 0.98306 1.13494 1.22983 0.90549 0.96528 0.92096
1.21011 0.95177 0.94756 1.07997 1.17926 0.87112 0.83294 0.77144
1.90753 1.13471 1.86897 1.48991 1.45804 1.10194 1.06008 1.73623
1.22756 0.95514 0.79907 1.00384 0.88714 1.22233 1.02350 0.83363
0.89801 1.44397 1.70119 1.03713 1.14715 1.19116 1.31593 0.89496
0.95191 0.90258 1.24815 1.01459 0.96329 0.97933 1.69806 1.51673
1.11830 1.23343 0.86002 0.78667 0.79782 0.81062 1.20485 1.21770
1.21684 1.21338 0.95859 0.93419 0.87864 1.22443 0.99380 0.96652
0.94696 0.90797 1.21743 1.01736 1.00916 0.95098 0.89731 0.92057
0.88116 0.84271 0.82455 0.82446 0.77253 0.96861 0.87027 0.93717
0.95422 0.95832 0.93133 0.92836 0.92446
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.52 8.84 36.00 0.32 -1.20 16
2 C 0.02 0.23 5.95 -103.91 -0.62 -0.39 16
3 C -0.19 -1.85 9.78 -39.49 -0.39 -2.24 16
4 C 0.12 1.17 11.17 -17.47 -0.20 0.98 16
5 N -0.49 -6.06 10.35 -12.91 -0.13 -6.19 16
6 C 0.14 1.69 10.70 -17.13 -0.18 1.51 16
7 C -0.18 -2.56 5.89 -104.82 -0.62 -3.18 16
8 C 0.56 9.36 7.72 -12.33 -0.10 9.27 16
9 O -0.52 -10.48 13.15 5.32 0.07 -10.41 16
10 N -0.71 -11.14 5.15 -52.67 -0.27 -11.41 16
11 C 0.12 2.27 2.87 -65.78 -0.19 2.08 16
12 H 0.09 1.99 7.44 -51.93 -0.39 1.60 16
13 C 0.15 3.65 5.58 -2.53 -0.01 3.63 16
14 N -0.60 -15.49 3.39 -170.08 -0.58 -16.07 16
15 C -0.23 -6.34 10.27 -15.06 -0.15 -6.49 16
16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16
17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16
18 N -0.92 -27.42 10.09 55.49 0.56 -26.86 16
19 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16
20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
23 C 0.14 2.89 6.84 -3.06 -0.02 2.87 16
24 C -0.11 -1.85 3.20 -88.79 -0.28 -2.13 16
25 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16
26 C -0.14 -1.86 9.16 37.16 0.34 -1.51 16
27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
28 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16
29 H 0.10 1.45 5.96 -51.93 -0.31 1.14 16
30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16
31 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16
32 H 0.16 1.60 6.47 -52.48 -0.34 1.26 16
33 H 0.39 4.96 6.67 -40.82 -0.27 4.69 16
34 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16
35 H 0.11 3.23 5.87 -51.93 -0.30 2.92 16
36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16
37 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16
38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16
39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
41 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16
LS Contribution 333.74 15.07 5.03 5.03
Total: -1.00 -33.15 333.74 -8.32 -41.47
By element:
Atomic # 1 Polarization: 10.08 SS G_CDS: -5.77 Total: 4.31 kcal
Atomic # 6 Polarization: 5.01 SS G_CDS: -2.20 Total: 2.82 kcal
Atomic # 7 Polarization: -60.10 SS G_CDS: -0.42 Total: -60.52 kcal
Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -33.15 -8.32 -41.47 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079522511.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.972 kcal
(2) G-P(sol) polarization free energy of solvation -33.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.822 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.506 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds