Wall clock time and date at job start Tue Mar 31 2020 02:48:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38402 * 120.85803 * 2 1
4 4 C 1.38314 * 119.30310 * 180.24437 * 3 2 1
5 5 N 1.31956 * 121.08278 * 359.47675 * 4 3 2
6 6 C 1.31664 * 121.87801 * 0.25219 * 5 4 3
7 7 C 1.39559 * 120.56829 * 0.02653 * 6 5 4
8 8 C 1.47846 * 120.56223 * 179.97438 * 7 6 5
9 9 O 1.21546 * 119.99892 * 173.90996 * 8 7 6
10 10 N 1.34776 * 119.99697 * 353.90349 * 8 7 6
11 11 C 1.46501 * 119.99731 * 180.02562 * 10 8 7
12 12 H 1.08996 * 110.88428 * 31.12474 * 11 10 8
13 13 C 1.54908 * 111.00442 * 267.20169 * 11 10 8
14 14 N 1.47427 * 104.82950 * 204.91889 * 13 11 10
15 15 C 1.36937 * 125.64475 * 204.15155 * 14 13 11
16 16 H 1.08001 * 119.99714 * 179.97438 * 15 14 13
17 17 C 1.38810 * 120.00335 * 359.96841 * 15 14 13
18 18 N 1.31618 * 120.00057 * 0.02562 * 17 15 14
19 19 Si 1.86807 * 120.00145 * 180.02562 * 17 15 14
20 20 H 1.48496 * 109.46880 * 0.02562 * 19 17 15
21 21 H 1.48498 * 109.47029 * 120.00309 * 19 17 15
22 22 H 1.48504 * 109.46798 * 240.00289 * 19 17 15
23 23 C 1.47017 * 108.70711 * 24.12549 * 14 13 11
24 24 C 1.54327 * 107.26895 * 358.94200 * 23 14 13
25 25 H 1.09006 * 110.87263 * 96.24050 * 24 23 14
26 26 C 1.52995 * 110.71978 * 219.44232 * 24 23 14
27 27 H 1.09005 * 109.46971 * 263.92977 * 1 2 3
28 28 H 1.09006 * 109.46721 * 23.92676 * 1 2 3
29 29 H 1.08997 * 109.47310 * 143.92591 * 1 2 3
30 30 H 1.07997 * 120.34551 * 0.02562 * 3 2 1
31 31 H 1.08000 * 119.45778 * 179.75515 * 4 3 2
32 32 H 1.08004 * 119.71669 * 179.97438 * 6 5 4
33 33 H 0.96996 * 120.00185 * 0.02562 * 10 8 7
34 34 H 1.08999 * 110.36551 * 323.75318 * 13 11 10
35 35 H 1.08998 * 110.37105 * 86.07844 * 13 11 10
36 36 H 0.97000 * 120.00359 * 179.97438 * 18 17 15
37 37 H 1.08998 * 109.88685 * 239.52345 * 23 14 13
38 38 H 1.08996 * 109.88492 * 118.35801 * 23 14 13
39 39 H 1.09006 * 109.47273 * 173.52353 * 26 24 23
40 40 H 1.08998 * 109.47164 * 293.51897 * 26 24 23
41 41 H 1.08999 * 109.47404 * 53.52495 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2168 1.1881 0.0000
4 6 3.5994 1.1506 -0.0051
5 7 4.2498 0.0024 0.0003
6 6 3.6197 -1.1536 0.0059
7 6 2.2249 -1.2017 0.0056
8 6 1.5175 -2.4999 0.0113
9 8 0.3076 -2.5322 0.1228
10 7 2.2143 -3.6475 -0.1072
11 6 1.5133 -4.9339 -0.1021
12 1 0.5174 -4.8354 -0.5341
13 6 1.4429 -5.5223 1.3291
14 7 1.3068 -6.9771 1.1328
15 6 0.7570 -7.8552 2.0282
16 1 0.7029 -8.9070 1.7892
17 6 0.2694 -7.3935 3.2431
18 7 0.3350 -6.1116 3.5342
19 14 -0.4800 -8.5915 4.4648
20 1 -0.4343 -9.9652 3.9026
21 1 0.2900 -8.5507 5.7339
22 1 -1.8909 -8.2110 4.7294
23 6 1.8585 -7.3288 -0.1838
24 6 2.3368 -6.0189 -0.8449
25 1 3.4046 -5.8701 -0.6841
26 6 2.0111 -6.0168 -2.3398
27 1 -0.3633 -0.1087 1.0220
28 1 -0.3633 0.9394 -0.4168
29 1 -0.3634 -0.8306 -0.6051
30 1 1.6966 2.1345 0.0004
31 1 4.1559 2.0762 -0.0092
32 1 4.1871 -2.0726 0.0098
33 1 3.1798 -3.6217 -0.1959
34 1 2.3579 -5.2975 1.8771
35 1 0.5758 -5.1282 1.8591
36 1 -0.0061 -5.7889 4.3829
37 1 1.0865 -7.7933 -0.7972
38 1 2.6994 -8.0116 -0.0629
39 1 2.2517 -5.0414 -2.7628
40 1 2.5998 -6.7852 -2.8410
41 1 0.9500 -6.2223 -2.4809
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001079522511.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:13
Heat of formation + Delta-G solvation = 2.848436 kcal
Electronic energy + Delta-G solvation = -23083.715106 eV
Core-core repulsion = 19770.286892 eV
Total energy + Delta-G solvation = -3313.428214 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.78820 -40.35748 -39.03188 -35.83610 -34.79014 -34.38726 -32.49501 -32.11446
-29.69549 -28.68370 -27.38358 -25.81075 -24.95599 -23.30312 -22.34642 -21.66593
-21.10105 -18.93888 -18.76586 -17.79871 -17.22267 -17.08541 -16.76312 -16.17661
-15.94085 -15.60679 -15.06339 -14.85087 -14.46791 -14.39962 -14.20432 -13.90786
-13.78765 -13.66546 -13.45105 -13.38747 -13.03756 -12.95074 -12.86739 -12.60983
-12.15505 -12.02318 -11.85598 -11.65372 -11.43158 -11.07634 -10.79379 -10.59727
-10.39298 -10.23131 -9.94642 -8.91454 -7.78824 -5.25398 -0.35195 0.18064
1.44216 1.45966 1.56425 1.83806 2.07169 2.48513 2.82041 3.31156
3.31630 3.62443 3.66171 3.69771 3.76454 3.87578 4.01931 4.05715
4.09025 4.42455 4.51948 4.56549 4.60651 4.65057 4.70644 4.75096
4.85847 4.88629 5.02550 5.08028 5.13619 5.20322 5.25508 5.41765
5.44707 5.49358 5.62479 5.63399 5.79177 6.26704 6.52382 6.85298
7.05823 7.21017 7.75316 8.37687 9.22013
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.018626 B = 0.004303 C = 0.003856
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1502.928506 B = 6505.473775 C = 7260.427817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C 0.002 3.998
3 C -0.175 4.175
4 C 0.123 3.877
5 N -0.510 5.510
6 C 0.138 3.862
7 C -0.206 4.206
8 C 0.556 3.444
9 O -0.566 6.566
10 N -0.696 5.696
11 C 0.138 3.862
12 H 0.072 0.928
13 C 0.156 3.844
14 N -0.627 5.627
15 C -0.239 4.239
16 H 0.087 0.913
17 C -0.070 4.070
18 N -0.950 5.950
19 Si 0.981 3.019
20 H -0.262 1.262
21 H -0.292 1.292
22 H -0.294 1.294
23 C 0.133 3.867
24 C -0.095 4.095
25 H 0.098 0.902
26 C -0.129 4.129
27 H 0.068 0.932
28 H 0.094 0.906
29 H 0.073 0.927
30 H 0.175 0.825
31 H 0.197 0.803
32 H 0.174 0.826
33 H 0.411 0.589
34 H -0.009 1.009
35 H 0.062 0.938
36 H 0.244 0.756
37 H 0.032 0.968
38 H 0.034 0.966
39 H 0.067 0.933
40 H 0.078 0.922
41 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.492 13.906 -12.030 19.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.006 4.006
3 C -0.194 4.194
4 C -0.033 4.033
5 N -0.220 5.220
6 C -0.020 4.020
7 C -0.212 4.212
8 C 0.344 3.656
9 O -0.446 6.446
10 N -0.347 5.347
11 C 0.032 3.968
12 H 0.090 0.910
13 C 0.030 3.970
14 N -0.353 5.353
15 C -0.367 4.367
16 H 0.104 0.896
17 C -0.262 4.262
18 N -0.600 5.600
19 Si 0.809 3.191
20 H -0.186 1.186
21 H -0.219 1.219
22 H -0.221 1.221
23 C 0.008 3.992
24 C -0.114 4.114
25 H 0.116 0.884
26 C -0.187 4.187
27 H 0.087 0.913
28 H 0.113 0.887
29 H 0.091 0.909
30 H 0.193 0.807
31 H 0.214 0.786
32 H 0.191 0.809
33 H 0.248 0.752
34 H 0.009 0.991
35 H 0.080 0.920
36 H 0.054 0.946
37 H 0.050 0.950
38 H 0.052 0.948
39 H 0.086 0.914
40 H 0.097 0.903
41 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 7.469 13.834 -11.785 19.649
hybrid contribution -1.077 -0.812 1.202 1.807
sum 6.392 13.022 -10.583 17.956
Atomic orbital electron populations
1.21011 0.89385 1.03972 1.03180 1.20759 0.97783 0.92071 0.90026
1.22410 0.95641 0.98872 1.02500 1.23621 0.92174 0.97020 0.90436
1.67780 1.41216 0.98815 1.14140 1.23176 0.89798 0.97568 0.91473
1.20845 0.95948 0.93496 1.10876 1.18479 0.86791 0.84439 0.75893
1.90740 1.15441 1.87611 1.50835 1.45599 1.10994 1.04743 1.73358
1.22202 0.95800 0.81934 0.96907 0.91005 1.21888 0.98912 0.83583
0.92653 1.44701 1.70378 1.03946 1.16288 1.19546 1.31050 0.90336
0.95814 0.89558 1.25704 1.02534 0.97954 1.00013 1.70120 1.52909
1.13704 1.23274 0.84961 0.77159 0.78485 0.78451 1.18578 1.21876
1.22106 1.21601 0.96018 0.95767 0.85778 1.22394 0.99990 0.92877
0.96141 0.88378 1.21691 1.01572 1.02867 0.92544 0.91320 0.88746
0.90880 0.80712 0.78607 0.80944 0.75168 0.99077 0.92015 0.94614
0.95046 0.94834 0.91412 0.90269 0.93492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.95 8.84 71.23 0.63 -2.32 16
2 C 0.00 0.05 5.95 -19.40 -0.12 -0.07 16
3 C -0.17 -2.93 9.78 22.33 0.22 -2.71 16
4 C 0.12 2.02 11.17 84.69 0.95 2.96 16
5 N -0.51 -11.19 10.35 -194.75 -2.01 -13.20 16
6 C 0.14 3.22 10.70 85.04 0.91 4.13 16
7 C -0.21 -5.70 5.89 -19.99 -0.12 -5.82 16
8 C 0.56 19.29 7.72 86.79 0.67 19.96 16
9 O -0.57 -24.19 13.15 -3.86 -0.05 -24.24 16
10 N -0.70 -22.20 5.15 -438.84 -2.26 -24.46 16
11 C 0.14 5.38 2.87 46.38 0.13 5.51 16
12 H 0.07 3.16 7.44 -2.39 -0.02 3.14 16
13 C 0.16 8.07 5.58 86.85 0.48 8.55 16
14 N -0.63 -33.06 3.39 -692.00 -2.35 -35.41 16
15 C -0.24 -13.70 10.27 84.03 0.86 -12.84 16
16 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16
17 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16
18 N -0.95 -59.66 10.09 21.65 0.22 -59.45 16
19 Si 0.98 47.06 29.55 68.60 2.03 49.09 16
20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16
21 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16
22 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16
23 C 0.13 5.37 6.84 86.73 0.59 5.96 16
24 C -0.09 -2.98 3.20 -9.61 -0.03 -3.02 16
25 H 0.10 2.66 8.00 -2.38 -0.02 2.64 16
26 C -0.13 -3.15 9.16 71.98 0.66 -2.49 16
27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16
28 H 0.09 1.61 8.07 -2.38 -0.02 1.59 16
29 H 0.07 2.23 5.96 -2.39 -0.01 2.22 16
30 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16
31 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16
32 H 0.17 3.23 6.47 -2.91 -0.02 3.22 16
33 H 0.41 9.99 6.67 -92.71 -0.62 9.38 16
34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16
35 H 0.06 3.83 5.87 -2.39 -0.01 3.82 16
36 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16
37 H 0.03 1.25 7.76 -2.39 -0.02 1.23 16
38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16
39 H 0.07 1.45 8.14 -2.38 -0.02 1.44 16
40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
41 H 0.05 1.25 8.06 -2.39 -0.02 1.23 16
Total: -1.00 -77.24 333.74 2.30 -74.93
By element:
Atomic # 1 Polarization: 18.12 SS G_CDS: 0.42 Total: 18.55 kcal
Atomic # 6 Polarization: 7.88 SS G_CDS: 6.31 Total: 14.19 kcal
Atomic # 7 Polarization: -126.11 SS G_CDS: -6.41 Total: -132.51 kcal
Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal
Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal
Total: -77.24 2.30 -74.93 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079522511.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.780 kcal
(2) G-P(sol) polarization free energy of solvation -77.237 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.544 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds