Wall clock time and date at job start Tue Mar 31 2020 02:47:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38355 * 120.34792 * 2 1
4 4 N 1.31930 * 121.07626 * 180.02562 * 3 2 1
5 5 C 1.31686 * 121.88216 * 359.97438 * 4 3 2
6 6 C 1.39520 * 120.56707 * 0.02562 * 5 4 3
7 7 C 1.47845 * 120.55680 * 180.02562 * 6 5 4
8 8 O 1.21558 * 119.99421 * 180.02562 * 7 6 5
9 9 N 1.34778 * 120.00206 * 359.97438 * 7 6 5
10 10 C 1.46500 * 119.99572 * 180.02562 * 9 7 6
11 11 H 1.09000 * 110.78242 * 31.76274 * 10 9 7
12 12 C 1.54327 * 110.84789 * 268.69019 * 10 9 7
13 13 N 1.47032 * 107.26586 * 219.67541 * 12 10 9
14 14 C 1.36931 * 125.64719 * 178.85180 * 13 12 10
15 15 H 1.08002 * 120.00103 * 179.69760 * 14 13 12
16 16 C 1.38812 * 120.00429 * 359.69263 * 14 13 12
17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13
18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13
19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14
20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14
21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14
22 22 C 1.47428 * 108.70123 * 358.58848 * 13 12 10
23 23 C 1.54912 * 104.83095 * 24.35753 * 22 13 12
24 24 H 1.08993 * 111.01019 * 81.06270 * 23 22 13
25 25 C 1.52998 * 110.99964 * 204.91758 * 23 22 13
26 26 C 1.38359 * 120.34976 * 180.29108 * 2 1 3
27 27 H 1.09002 * 109.46855 * 90.00279 * 1 2 3
28 28 H 1.08998 * 109.47302 * 210.00594 * 1 2 3
29 29 H 1.09002 * 109.47492 * 330.01108 * 1 2 3
30 30 H 1.07999 * 119.46243 * 0.03165 * 3 2 1
31 31 H 1.08007 * 119.71608 * 179.97438 * 5 4 3
32 32 H 0.96997 * 119.99554 * 359.97438 * 9 7 6
33 33 H 1.09006 * 109.99153 * 100.20658 * 12 10 9
34 34 H 1.08994 * 109.78600 * 339.03309 * 12 10 9
35 35 H 0.97005 * 119.99717 * 179.97438 * 17 16 14
36 36 H 1.08997 * 110.36556 * 143.19064 * 22 13 12
37 37 H 1.08991 * 110.36533 * 265.40365 * 22 13 12
38 38 H 1.09001 * 109.47544 * 58.54332 * 25 23 22
39 39 H 1.09005 * 109.46735 * 178.54473 * 25 23 22
40 40 H 1.09002 * 109.47189 * 298.54218 * 25 23 22
41 41 H 1.08001 * 120.85230 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2060 1.1940 0.0000
4 7 3.5252 1.2107 -0.0005
5 6 4.2349 0.1015 -0.0005
6 6 3.6053 -1.1436 -0.0006
7 6 4.4023 -2.3889 0.0000
8 8 3.8432 -3.4682 -0.0005
9 7 5.7487 -2.3273 0.0000
10 6 6.5383 -3.5613 0.0000
11 1 6.0169 -4.3540 -0.5365
12 6 6.8621 -4.0062 1.4418
13 7 8.2454 -4.5043 1.4445
14 6 8.9227 -4.9729 2.5385
15 1 9.9393 -5.3227 2.4352
16 6 8.3029 -4.9983 3.7803
17 7 7.0638 -4.5723 3.9060
18 14 9.2266 -5.6381 5.2725
19 1 8.3495 -5.5609 6.4682
20 1 9.6237 -7.0501 5.0408
21 1 10.4408 -4.8125 5.4944
22 6 8.7803 -4.4217 0.0732
23 6 7.9421 -3.3146 -0.6134
24 1 8.3141 -2.3240 -0.3519
25 6 7.9188 -3.5062 -2.1311
26 6 2.2060 -1.1940 -0.0061
27 1 -0.3633 -0.0001 -1.0277
28 1 -0.3634 -0.8899 0.5139
29 1 -0.3634 0.8901 0.5137
30 1 1.6629 2.1275 0.0005
31 1 5.3136 0.1560 -0.0014
32 1 6.1947 -1.4659 -0.0007
33 1 6.1815 -4.8005 1.7484
34 1 6.7727 -3.1567 2.1189
35 1 6.6305 -4.5904 4.7737
36 1 9.8337 -4.1425 0.0931
37 1 8.6504 -5.3731 -0.4426
38 1 7.5031 -4.4857 -2.3674
39 1 7.3024 -2.7306 -2.5858
40 1 8.9342 -3.4387 -2.5215
41 1 1.6858 -2.1404 -0.0113
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001079523730.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:47:24
Heat of formation + Delta-G solvation = 20.085208 kcal
Electronic energy + Delta-G solvation = -22772.809948 eV
Core-core repulsion = 19460.129177 eV
Total energy + Delta-G solvation = -3312.680771 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.67258 -39.14733 -37.45068 -34.22445 -33.66702 -32.77952 -31.96310 -30.37552
-28.01842 -27.37617 -25.66975 -24.68552 -23.28781 -22.82202 -20.67948 -20.07448
-19.60292 -17.66156 -17.02412 -16.84885 -16.44205 -15.60367 -14.99807 -14.75219
-14.50979 -14.04764 -13.75212 -13.65027 -13.26603 -13.10311 -12.92714 -12.82936
-12.77791 -12.68985 -12.11877 -11.94626 -11.70615 -11.35414 -11.02162 -10.76179
-10.67618 -10.43998 -10.07810 -9.99187 -9.94613 -9.88921 -9.69158 -9.42260
-9.14658 -8.62618 -8.50815 -6.83529 -5.68767 -3.04089 0.56739 1.04730
2.98198 3.34466 3.42012 3.46027 3.47756 3.80106 4.15244 4.50625
4.52468 4.66557 4.75892 4.79326 4.98157 5.08216 5.29382 5.30926
5.34056 5.42850 5.47223 5.55199 5.70187 5.74409 5.91772 5.96699
5.97634 6.02815 6.14212 6.18692 6.33261 6.41281 6.47475 6.62222
6.71425 6.91866 7.53205 7.57588 7.69144 7.81479 7.85200 8.25810
8.45227 9.21995 9.82826 10.47564 11.41953
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.017940 B = 0.004066 C = 0.003603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1560.349757 B = 6884.564723 C = 7768.568844
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.147 4.147
3 C 0.114 3.886
4 N -0.484 5.484
5 C 0.126 3.874
6 C -0.171 4.171
7 C 0.560 3.440
8 O -0.533 6.533
9 N -0.704 5.704
10 C 0.119 3.881
11 H 0.091 0.909
12 C 0.173 3.827
13 N -0.606 5.606
14 C -0.232 4.232
15 H 0.079 0.921
16 C -0.007 4.007
17 N -0.920 5.920
18 Si 0.912 3.088
19 H -0.290 1.290
20 H -0.285 1.285
21 H -0.285 1.285
22 C 0.141 3.859
23 C -0.114 4.114
24 H 0.078 0.922
25 C -0.137 4.137
26 C -0.021 4.021
27 H 0.074 0.926
28 H 0.071 0.929
29 H 0.071 0.929
30 H 0.158 0.842
31 H 0.159 0.841
32 H 0.395 0.605
33 H 0.048 0.952
34 H 0.051 0.949
35 H 0.253 0.747
36 H 0.043 0.957
37 H 0.022 0.978
38 H 0.055 0.945
39 H 0.049 0.951
40 H 0.054 0.946
41 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.026 10.969 -11.390 18.208
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.149 4.149
3 C -0.043 4.043
4 N -0.192 5.192
5 C -0.032 4.032
6 C -0.176 4.176
7 C 0.345 3.655
8 O -0.410 6.410
9 N -0.354 5.354
10 C 0.015 3.985
11 H 0.109 0.891
12 C 0.047 3.953
13 N -0.332 5.332
14 C -0.360 4.360
15 H 0.097 0.903
16 C -0.203 4.203
17 N -0.567 5.567
18 Si 0.743 3.257
19 H -0.216 1.216
20 H -0.211 1.211
21 H -0.212 1.212
22 C 0.014 3.986
23 C -0.134 4.134
24 H 0.096 0.904
25 C -0.195 4.195
26 C -0.047 4.047
27 H 0.092 0.908
28 H 0.090 0.910
29 H 0.090 0.910
30 H 0.175 0.825
31 H 0.176 0.824
32 H 0.230 0.770
33 H 0.066 0.934
34 H 0.069 0.931
35 H 0.063 0.937
36 H 0.061 0.939
37 H 0.040 0.960
38 H 0.074 0.926
39 H 0.068 0.932
40 H 0.073 0.927
41 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -9.012 10.940 -11.142 18.029
hybrid contribution 0.272 -0.703 0.962 1.222
sum -8.740 10.237 -10.180 16.876
Atomic orbital electron populations
1.20726 0.89716 1.03445 1.02745 1.20931 0.97955 0.93791 1.02225
1.22858 0.89971 0.97580 0.93909 1.67678 1.08032 1.31013 1.12472
1.22974 1.00312 0.86851 0.93063 1.21133 0.95223 0.95096 1.06178
1.17954 0.82414 0.88162 0.76924 1.90785 1.71006 1.29530 1.49668
1.45833 1.05477 1.10055 1.73990 1.22566 0.89960 0.85552 1.00453
0.89104 1.21484 0.86119 0.98772 0.88917 1.44397 1.10939 1.75098
1.02805 1.19007 0.96209 1.35326 0.85439 0.90343 1.24824 0.96464
1.01395 0.97667 1.69963 1.11528 1.52005 1.23209 0.86194 0.78523
0.78689 0.82317 1.21619 1.21139 1.21162 1.21581 0.95951 0.94437
0.86600 1.22625 0.95617 1.00604 0.94546 0.90392 1.21699 1.01241
1.01548 0.95010 1.21659 0.92580 0.99012 0.91467 0.90761 0.90960
0.91004 0.82480 0.82389 0.76983 0.93415 0.93068 0.93670 0.93916
0.96004 0.92594 0.93151 0.92673 0.83502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.74 10.03 36.00 0.36 -0.38 16
2 C -0.15 -1.48 5.89 -104.54 -0.62 -2.10 16
3 C 0.11 1.17 10.85 -17.47 -0.19 0.98 16
4 N -0.48 -6.00 10.35 -12.91 -0.13 -6.13 16
5 C 0.13 1.58 10.71 -17.14 -0.18 1.39 16
6 C -0.17 -2.40 5.89 -104.82 -0.62 -3.02 16
7 C 0.56 9.59 7.78 -12.33 -0.10 9.50 16
8 O -0.53 -11.09 16.07 5.31 0.09 -11.00 16
9 N -0.70 -11.35 5.06 -52.96 -0.27 -11.62 16
10 C 0.12 2.27 2.78 -66.09 -0.18 2.08 16
11 H 0.09 1.83 7.42 -51.93 -0.39 1.45 16
12 C 0.17 4.29 5.13 -3.06 -0.02 4.27 16
13 N -0.61 -15.50 3.39 -170.06 -0.58 -16.08 16
14 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16
15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16
16 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16
17 N -0.92 -27.65 10.31 55.49 0.57 -27.08 16
18 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16
19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
22 C 0.14 2.84 6.70 -2.53 -0.02 2.83 16
23 C -0.11 -1.88 3.27 -88.47 -0.29 -2.17 16
24 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16
25 C -0.14 -1.81 9.30 37.16 0.35 -1.46 16
26 C -0.02 -0.26 9.39 -38.87 -0.37 -0.63 16
27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
28 H 0.07 0.49 8.09 -51.93 -0.42 0.06 16
29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16
30 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16
31 H 0.16 1.63 6.42 -52.48 -0.34 1.29 16
32 H 0.40 5.20 6.63 -40.82 -0.27 4.93 16
33 H 0.05 1.38 7.52 -51.93 -0.39 0.99 16
34 H 0.05 1.40 7.25 -51.93 -0.38 1.02 16
35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16
36 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16
37 H 0.02 0.44 8.04 -51.93 -0.42 0.03 16
38 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16
39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
41 H 0.15 1.82 7.74 -52.49 -0.41 1.42 16
LS Contribution 339.64 15.07 5.12 5.12
Total: -1.00 -33.99 339.64 -8.26 -42.25
By element:
Atomic # 1 Polarization: 8.80 SS G_CDS: -5.92 Total: 2.88 kcal
Atomic # 6 Polarization: 6.46 SS G_CDS: -2.12 Total: 4.34 kcal
Atomic # 7 Polarization: -60.51 SS G_CDS: -0.41 Total: -60.91 kcal
Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -33.99 -8.26 -42.25 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079523730.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.336 kcal
(2) G-P(sol) polarization free energy of solvation -33.987 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.085 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds