Wall clock time and date at job start Tue Mar 31 2020 02:47:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38355 * 120.34792 * 2 1
4 4 N 1.31930 * 121.07626 * 180.02562 * 3 2 1
5 5 C 1.31686 * 121.88216 * 359.97438 * 4 3 2
6 6 C 1.39520 * 120.56707 * 0.02562 * 5 4 3
7 7 C 1.47845 * 120.55680 * 180.02562 * 6 5 4
8 8 O 1.21558 * 119.99421 * 180.02562 * 7 6 5
9 9 N 1.34778 * 120.00206 * 359.97438 * 7 6 5
10 10 C 1.46500 * 119.99572 * 180.02562 * 9 7 6
11 11 H 1.09000 * 110.78242 * 31.76274 * 10 9 7
12 12 C 1.54327 * 110.84789 * 268.69019 * 10 9 7
13 13 N 1.47032 * 107.26586 * 219.67541 * 12 10 9
14 14 C 1.36931 * 125.64719 * 178.85180 * 13 12 10
15 15 H 1.08002 * 120.00103 * 179.69760 * 14 13 12
16 16 C 1.38812 * 120.00429 * 359.69263 * 14 13 12
17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13
18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13
19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14
20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14
21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14
22 22 C 1.47428 * 108.70123 * 358.58848 * 13 12 10
23 23 C 1.54912 * 104.83095 * 24.35753 * 22 13 12
24 24 H 1.08993 * 111.01019 * 81.06270 * 23 22 13
25 25 C 1.52998 * 110.99964 * 204.91758 * 23 22 13
26 26 C 1.38359 * 120.34976 * 180.29108 * 2 1 3
27 27 H 1.09002 * 109.46855 * 90.00279 * 1 2 3
28 28 H 1.08998 * 109.47302 * 210.00594 * 1 2 3
29 29 H 1.09002 * 109.47492 * 330.01108 * 1 2 3
30 30 H 1.07999 * 119.46243 * 0.03165 * 3 2 1
31 31 H 1.08007 * 119.71608 * 179.97438 * 5 4 3
32 32 H 0.96997 * 119.99554 * 359.97438 * 9 7 6
33 33 H 1.09006 * 109.99153 * 100.20658 * 12 10 9
34 34 H 1.08994 * 109.78600 * 339.03309 * 12 10 9
35 35 H 0.97005 * 119.99717 * 179.97438 * 17 16 14
36 36 H 1.08997 * 110.36556 * 143.19064 * 22 13 12
37 37 H 1.08991 * 110.36533 * 265.40365 * 22 13 12
38 38 H 1.09001 * 109.47544 * 58.54332 * 25 23 22
39 39 H 1.09005 * 109.46735 * 178.54473 * 25 23 22
40 40 H 1.09002 * 109.47189 * 298.54218 * 25 23 22
41 41 H 1.08001 * 120.85230 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2060 1.1940 0.0000
4 7 3.5252 1.2107 -0.0005
5 6 4.2349 0.1015 -0.0005
6 6 3.6053 -1.1436 -0.0006
7 6 4.4023 -2.3889 0.0000
8 8 3.8432 -3.4682 -0.0005
9 7 5.7487 -2.3273 0.0000
10 6 6.5383 -3.5613 0.0000
11 1 6.0169 -4.3540 -0.5365
12 6 6.8621 -4.0062 1.4418
13 7 8.2454 -4.5043 1.4445
14 6 8.9227 -4.9729 2.5385
15 1 9.9393 -5.3227 2.4352
16 6 8.3029 -4.9983 3.7803
17 7 7.0638 -4.5723 3.9060
18 14 9.2266 -5.6381 5.2725
19 1 8.3495 -5.5609 6.4682
20 1 9.6237 -7.0501 5.0408
21 1 10.4408 -4.8125 5.4944
22 6 8.7803 -4.4217 0.0732
23 6 7.9421 -3.3146 -0.6134
24 1 8.3141 -2.3240 -0.3519
25 6 7.9188 -3.5062 -2.1311
26 6 2.2060 -1.1940 -0.0061
27 1 -0.3633 -0.0001 -1.0277
28 1 -0.3634 -0.8899 0.5139
29 1 -0.3634 0.8901 0.5137
30 1 1.6629 2.1275 0.0005
31 1 5.3136 0.1560 -0.0014
32 1 6.1947 -1.4659 -0.0007
33 1 6.1815 -4.8005 1.7484
34 1 6.7727 -3.1567 2.1189
35 1 6.6305 -4.5904 4.7737
36 1 9.8337 -4.1425 0.0931
37 1 8.6504 -5.3731 -0.4426
38 1 7.5031 -4.4857 -2.3674
39 1 7.3024 -2.7306 -2.5858
40 1 8.9342 -3.4387 -2.5215
41 1 1.6858 -2.1404 -0.0113
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001079523730.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:47:23
Heat of formation + Delta-G solvation = -3.377574 kcal
Electronic energy + Delta-G solvation = -22773.827371 eV
Core-core repulsion = 19460.129177 eV
Total energy + Delta-G solvation = -3313.698194 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.75370 -40.47377 -39.04874 -35.76456 -34.76406 -34.29456 -33.07425 -32.16741
-29.63376 -28.19653 -27.40986 -26.02107 -24.77452 -23.77221 -22.28569 -21.63939
-21.01185 -18.91904 -18.76945 -18.03390 -17.56506 -17.02395 -16.75341 -16.10172
-15.83146 -15.61340 -15.01871 -14.88614 -14.60813 -14.29911 -14.17805 -14.05319
-13.74635 -13.57754 -13.47034 -13.35148 -13.07119 -12.86538 -12.80469 -12.58160
-12.26557 -12.10589 -11.86847 -11.69080 -11.49109 -11.31841 -10.89248 -10.75355
-10.50584 -10.14554 -9.92211 -8.94200 -7.86038 -5.23964 -0.41515 0.13207
1.43780 1.47941 1.54213 1.75820 2.02811 2.48729 2.78114 3.25234
3.32537 3.56187 3.64782 3.74081 3.79149 3.85127 3.91453 4.03023
4.08623 4.17846 4.45431 4.50551 4.61471 4.70746 4.75472 4.83859
4.87806 4.97176 5.04933 5.06970 5.13130 5.17338 5.23720 5.27356
5.43256 5.48826 5.56909 5.59561 5.75023 6.15030 6.45273 6.79248
7.04248 7.12942 7.74355 8.38139 9.23205
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.017940 B = 0.004066 C = 0.003603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1560.349757 B = 6884.564723 C = 7768.568844
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 C -0.139 4.139
3 C 0.120 3.880
4 N -0.499 5.499
5 C 0.127 3.873
6 C -0.191 4.191
7 C 0.559 3.441
8 O -0.580 6.580
9 N -0.693 5.693
10 C 0.135 3.865
11 H 0.077 0.923
12 C 0.188 3.812
13 N -0.627 5.627
14 C -0.243 4.243
15 H 0.089 0.911
16 C -0.069 4.069
17 N -0.955 5.955
18 Si 0.981 3.019
19 H -0.298 1.298
20 H -0.277 1.277
21 H -0.271 1.271
22 C 0.132 3.868
23 C -0.094 4.094
24 H 0.094 0.906
25 C -0.129 4.129
26 C -0.036 4.036
27 H 0.089 0.911
28 H 0.070 0.930
29 H 0.094 0.906
30 H 0.196 0.804
31 H 0.175 0.825
32 H 0.412 0.588
33 H -0.010 1.010
34 H 0.018 0.982
35 H 0.244 0.756
36 H 0.057 0.943
37 H 0.026 0.974
38 H 0.050 0.950
39 H 0.068 0.932
40 H 0.079 0.921
41 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.647 13.138 -12.823 20.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.140 4.140
3 C -0.037 4.037
4 N -0.207 5.207
5 C -0.031 4.031
6 C -0.197 4.197
7 C 0.346 3.654
8 O -0.460 6.460
9 N -0.344 5.344
10 C 0.029 3.971
11 H 0.095 0.905
12 C 0.061 3.939
13 N -0.354 5.354
14 C -0.372 4.372
15 H 0.107 0.893
16 C -0.262 4.262
17 N -0.604 5.604
18 Si 0.809 3.191
19 H -0.224 1.224
20 H -0.203 1.203
21 H -0.197 1.197
22 C 0.007 3.993
23 C -0.114 4.114
24 H 0.112 0.888
25 C -0.187 4.187
26 C -0.063 4.063
27 H 0.108 0.892
28 H 0.088 0.912
29 H 0.113 0.887
30 H 0.212 0.788
31 H 0.192 0.808
32 H 0.250 0.750
33 H 0.008 0.992
34 H 0.037 0.963
35 H 0.053 0.947
36 H 0.075 0.925
37 H 0.044 0.956
38 H 0.069 0.931
39 H 0.087 0.913
40 H 0.097 0.903
41 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -8.588 13.142 -12.621 20.143
hybrid contribution 0.089 -1.356 1.386 1.941
sum -8.499 11.786 -11.235 18.368
Atomic orbital electron populations
1.20824 0.87095 1.04517 1.04038 1.21262 0.99717 0.92618 1.00448
1.23528 0.89481 0.99045 0.91656 1.67773 1.09189 1.30575 1.13118
1.23162 1.01203 0.86204 0.92495 1.20912 0.95566 0.94063 1.09124
1.18500 0.82588 0.88767 0.75515 1.90754 1.71842 1.31559 1.51871
1.45646 1.05302 1.09882 1.73538 1.22133 0.91923 0.86538 0.96504
0.90474 1.21113 0.85189 0.95589 0.92005 1.44715 1.11269 1.74850
1.04552 1.19500 0.96785 1.34480 0.86444 0.89282 1.25730 0.97338
1.02327 1.00790 1.70234 1.13278 1.53755 1.23086 0.85111 0.77364
0.78436 0.78198 1.22430 1.20265 1.19692 1.21860 0.97223 0.96015
0.84195 1.22557 0.92201 0.99985 0.96618 0.88774 1.21656 1.03185
1.01986 0.91841 1.21805 0.92327 1.00014 0.92118 0.89205 0.91151
0.88713 0.78768 0.80792 0.75001 0.99194 0.96343 0.94671 0.92461
0.95629 0.93109 0.91278 0.90258 0.84312
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.17 10.03 71.23 0.71 -0.46 16
2 C -0.14 -2.53 5.89 -19.81 -0.12 -2.65 16
3 C 0.12 2.11 10.85 84.71 0.92 3.03 16
4 N -0.50 -11.30 10.35 -194.75 -2.01 -13.31 16
5 C 0.13 3.04 10.71 85.02 0.91 3.95 16
6 C -0.19 -5.42 5.89 -19.99 -0.12 -5.54 16
7 C 0.56 19.90 7.78 86.79 0.68 20.57 16
8 O -0.58 -25.68 16.07 -3.90 -0.06 -25.74 16
9 N -0.69 -22.70 5.06 -439.75 -2.23 -24.93 16
10 C 0.13 5.25 2.78 46.18 0.13 5.38 16
11 H 0.08 3.24 7.42 -2.39 -0.02 3.23 16
12 C 0.19 9.84 5.13 86.73 0.45 10.28 16
13 N -0.63 -32.91 3.39 -691.96 -2.35 -35.26 16
14 C -0.24 -13.88 10.28 84.03 0.86 -13.02 16
15 H 0.09 4.76 7.83 -2.91 -0.02 4.73 16
16 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16
17 N -0.95 -60.35 10.31 21.65 0.22 -60.12 16
18 Si 0.98 46.89 29.55 68.60 2.03 48.92 16
19 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16
20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16
21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16
22 C 0.13 5.23 6.70 86.86 0.58 5.81 16
23 C -0.09 -2.95 3.27 -9.40 -0.03 -2.98 16
24 H 0.09 2.69 8.01 -2.39 -0.02 2.67 16
25 C -0.13 -3.01 9.30 71.98 0.67 -2.34 16
26 C -0.04 -0.91 9.39 22.73 0.21 -0.70 16
27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
28 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16
29 H 0.09 0.63 8.09 -2.39 -0.02 0.61 16
30 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16
31 H 0.18 3.35 6.42 -2.91 -0.02 3.33 16
32 H 0.41 10.54 6.63 -92.71 -0.61 9.93 16
33 H -0.01 -0.64 7.52 -2.38 -0.02 -0.66 16
34 H 0.02 1.07 7.25 -2.39 -0.02 1.05 16
35 H 0.24 15.15 8.31 -92.70 -0.77 14.38 16
36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
37 H 0.03 1.01 8.04 -2.39 -0.02 0.99 16
38 H 0.05 1.25 8.11 -2.39 -0.02 1.23 16
39 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16
40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
41 H 0.14 3.63 7.74 -2.91 -0.02 3.61 16
Total: -1.00 -78.90 339.64 2.34 -76.56
By element:
Atomic # 1 Polarization: 15.73 SS G_CDS: 0.42 Total: 16.15 kcal
Atomic # 6 Polarization: 11.42 SS G_CDS: 6.32 Total: 17.74 kcal
Atomic # 7 Polarization: -127.26 SS G_CDS: -6.37 Total: -133.63 kcal
Atomic # 8 Polarization: -25.68 SS G_CDS: -0.06 Total: -25.74 kcal
Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal
Total: -78.90 2.34 -76.56 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079523730.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.182 kcal
(2) G-P(sol) polarization free energy of solvation -78.901 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.719 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.560 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds