Wall clock time and date at job start Tue Mar 31 2020 02:57:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08996 * 110.78191 * 2 1
4 4 C 1.54325 * 110.72375 * 236.75921 * 2 1 3
5 5 N 1.47019 * 107.27485 * 219.44395 * 4 2 1
6 6 C 1.36929 * 125.64784 * 178.98606 * 5 4 2
7 7 H 1.07997 * 120.00348 * 359.97438 * 6 5 4
8 8 C 1.38816 * 119.99928 * 179.97438 * 6 5 4
9 9 N 1.31617 * 120.00130 * 0.02562 * 8 6 5
10 10 Si 1.86802 * 119.99912 * 179.97438 * 8 6 5
11 11 H 1.48494 * 109.47079 * 90.00045 * 10 8 6
12 12 H 1.48505 * 109.47030 * 210.00059 * 10 8 6
13 13 H 1.48500 * 109.47561 * 329.99719 * 10 8 6
14 14 C 1.47423 * 108.70154 * 358.93746 * 5 4 2
15 15 C 1.54913 * 104.83633 * 24.13222 * 14 5 4
16 16 H 1.08998 * 111.03762 * 81.07178 * 15 14 5
17 17 N 1.46496 * 111.00510 * 204.91897 * 15 14 5
18 18 C 1.34774 * 119.99544 * 267.19114 * 17 15 14
19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 15
20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 15
21 21 C 1.50698 * 109.47294 * 180.02562 * 20 18 17
22 22 C 1.38666 * 120.42253 * 89.99629 * 21 20 18
23 23 C 1.38624 * 118.42373 * 180.02562 * 22 21 20
24 24 C 1.38231 * 119.16281 * 0.02562 * 23 22 21
25 25 N 1.31856 * 120.75979 * 0.02562 * 24 23 22
26 26 C 1.31889 * 121.72355 * 359.70106 * 25 24 23
27 27 H 1.09004 * 109.47211 * 296.76002 * 1 2 3
28 28 H 1.08992 * 109.47411 * 56.76140 * 1 2 3
29 29 H 1.09000 * 109.46963 * 176.76625 * 1 2 3
30 30 H 1.08998 * 109.87759 * 338.86313 * 4 2 1
31 31 H 1.09003 * 109.88213 * 100.02012 * 4 2 1
32 32 H 0.97002 * 120.00135 * 180.02562 * 9 8 6
33 33 H 1.09007 * 110.36915 * 265.29076 * 14 5 4
34 34 H 1.09007 * 110.36905 * 142.96726 * 14 5 4
35 35 H 0.96994 * 120.00700 * 87.19234 * 17 15 14
36 36 H 1.09001 * 109.46953 * 299.99667 * 20 18 17
37 37 H 1.09000 * 109.47318 * 59.99264 * 20 18 17
38 38 H 1.07999 * 120.78896 * 0.02562 * 22 21 20
39 39 H 1.07999 * 120.42497 * 180.02562 * 23 22 21
40 40 H 1.07999 * 119.62323 * 180.02562 * 24 23 22
41 41 H 1.08005 * 119.61253 * 180.30876 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9167 1.0190 0.0000
4 6 2.0760 -0.7912 -1.2072
5 7 3.2445 -1.5507 -0.7390
6 6 4.0044 -2.3967 -1.5018
7 1 3.7613 -2.5506 -2.5427
8 6 5.0872 -3.0567 -0.9370
9 7 5.3832 -2.8697 0.3317
10 14 6.1234 -4.2114 -1.9775
11 1 7.2325 -3.4502 -2.6063
12 1 6.6844 -5.2839 -1.1171
13 1 5.2769 -4.8181 -3.0361
14 6 3.4633 -1.2497 0.6875
15 6 2.0790 -0.7954 1.2139
16 1 1.4448 -1.6531 1.4380
17 7 2.2215 0.0697 2.3875
18 6 2.1874 -0.4627 3.6252
19 8 2.0391 -1.6580 3.7673
20 6 2.3334 0.4273 4.8326
21 6 2.2617 -0.4086 6.0844
22 6 3.4140 -0.9486 6.6352
23 6 3.3001 -1.7115 7.7870
24 6 2.0503 -1.9076 8.3441
25 7 0.9755 -1.3794 7.7924
26 6 1.0470 -0.6440 6.6998
27 1 -0.3634 0.4627 0.9176
28 1 -0.3634 0.5632 -0.8595
29 1 -0.3633 -1.0260 -0.0580
30 1 1.3130 -1.4758 -1.5775
31 1 2.3740 -0.1024 -1.9977
32 1 6.1401 -3.3306 0.7262
33 1 4.1932 -0.4477 0.7985
34 1 3.7960 -2.1425 1.2170
35 1 2.3404 1.0256 2.2739
36 1 3.2949 0.9391 4.7925
37 1 1.5299 1.1638 4.8404
38 1 4.3775 -0.7789 6.1776
39 1 4.1766 -2.1471 8.2434
40 1 1.9530 -2.5003 9.2417
41 1 0.1453 -0.2237 6.2794
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001079576068.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:57:19
Heat of formation + Delta-G solvation = 21.528639 kcal
Electronic energy + Delta-G solvation = -22747.647725 eV
Core-core repulsion = 19435.029546 eV
Total energy + Delta-G solvation = -3312.618179 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.36913 -39.26173 -37.51014 -33.91301 -33.53091 -32.63231 -31.90454 -30.36946
-28.70213 -27.07975 -25.61610 -23.71255 -23.57707 -22.44382 -20.53963 -20.09217
-19.46257 -17.16423 -16.92911 -16.76585 -16.45524 -15.95140 -15.13655 -14.87762
-14.51118 -14.05884 -13.79828 -13.57701 -13.25549 -13.04430 -12.99418 -12.86842
-12.55779 -12.36240 -12.09973 -11.71823 -11.57642 -11.23345 -11.08928 -10.79506
-10.64181 -10.36669 -9.98380 -9.87126 -9.78478 -9.76119 -9.54534 -9.46375
-8.94421 -8.65452 -8.44646 -6.84214 -5.63825 -3.07300 1.07804 1.29539
2.96088 3.40395 3.44435 3.46712 3.48162 3.90080 4.38014 4.49672
4.63144 4.76479 4.96995 4.97830 5.03861 5.18438 5.28371 5.30659
5.37756 5.43696 5.53163 5.61820 5.72935 5.75822 5.95954 6.03627
6.09375 6.15071 6.23059 6.24358 6.37540 6.47907 6.65795 6.67349
6.80273 6.95230 7.44951 7.62010 7.83576 7.92941 7.94992 8.37250
8.59899 9.21387 9.82752 10.45936 11.39119
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.016582 B = 0.004169 C = 0.003482
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1688.185145 B = 6714.922250 C = 8039.917726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.112 4.112
3 H 0.073 0.927
4 C 0.141 3.859
5 N -0.603 5.603
6 C -0.226 4.226
7 H 0.079 0.921
8 C -0.010 4.010
9 N -0.919 5.919
10 Si 0.915 3.085
11 H -0.289 1.289
12 H -0.290 1.290
13 H -0.281 1.281
14 C 0.149 3.851
15 C 0.119 3.881
16 H 0.092 0.908
17 N -0.714 5.714
18 C 0.511 3.489
19 O -0.529 6.529
20 C -0.099 4.099
21 C -0.111 4.111
22 C -0.060 4.060
23 C -0.171 4.171
24 C 0.092 3.908
25 N -0.487 5.487
26 C 0.110 3.890
27 H 0.050 0.950
28 H 0.052 0.948
29 H 0.056 0.944
30 H 0.027 0.973
31 H 0.023 0.977
32 H 0.252 0.748
33 H 0.012 0.988
34 H 0.111 0.889
35 H 0.394 0.606
36 H 0.104 0.896
37 H 0.103 0.897
38 H 0.134 0.866
39 H 0.134 0.866
40 H 0.153 0.847
41 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.743 10.119 11.458 16.708
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.131 4.131
3 H 0.091 0.909
4 C 0.014 3.986
5 N -0.330 5.330
6 C -0.355 4.355
7 H 0.097 0.903
8 C -0.205 4.205
9 N -0.567 5.567
10 Si 0.745 3.255
11 H -0.216 1.216
12 H -0.216 1.216
13 H -0.206 1.206
14 C 0.023 3.977
15 C 0.014 3.986
16 H 0.110 0.890
17 N -0.364 5.364
18 C 0.296 3.704
19 O -0.404 6.404
20 C -0.140 4.140
21 C -0.114 4.114
22 C -0.086 4.086
23 C -0.191 4.191
24 C -0.065 4.065
25 N -0.195 5.195
26 C -0.047 4.047
27 H 0.069 0.931
28 H 0.071 0.929
29 H 0.075 0.925
30 H 0.045 0.955
31 H 0.041 0.959
32 H 0.063 0.937
33 H 0.030 0.970
34 H 0.128 0.872
35 H 0.228 0.772
36 H 0.122 0.878
37 H 0.121 0.879
38 H 0.152 0.848
39 H 0.152 0.848
40 H 0.170 0.830
41 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -7.491 8.930 11.955 16.697
hybrid contribution 1.613 0.094 -1.107 1.959
sum -5.879 9.024 10.847 15.286
Atomic orbital electron populations
1.21733 0.94976 1.01886 1.00840 1.22430 0.95209 0.99126 0.96346
0.90852 1.21346 0.90281 0.93176 0.93752 1.44389 1.30837 1.50497
1.07231 1.19073 1.06245 1.17222 0.92917 0.90333 1.24813 0.98795
1.00545 0.96379 1.69804 1.29882 1.46145 1.10869 0.86072 0.80194
0.80291 0.78933 1.21634 1.21624 1.20627 1.22220 0.89383 1.01040
0.85056 1.22700 1.00985 0.92421 0.82504 0.89018 1.45860 1.73973
1.10898 1.05689 1.20321 0.77027 0.88950 0.84110 1.90761 1.48108
1.15482 1.86064 1.20621 1.05296 0.97666 0.90434 1.20305 0.94750
0.99848 0.96452 1.21494 0.98736 0.94059 0.94292 1.22107 0.99401
1.00244 0.97323 1.22714 0.88141 0.96681 0.98981 1.67659 1.32695
1.08505 1.10649 1.22554 0.96573 0.94235 0.91299 0.93121 0.92903
0.92501 0.95486 0.95901 0.93706 0.96983 0.87168 0.77236 0.87774
0.87877 0.84799 0.84821 0.82988 0.83150
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.85 9.16 37.15 0.34 -1.51 16
2 C -0.11 -1.84 3.20 -88.78 -0.28 -2.12 16
3 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16
4 C 0.14 2.90 6.84 -3.07 -0.02 2.87 16
5 N -0.60 -15.58 3.39 -170.07 -0.58 -16.16 16
6 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16
7 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16
8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16
9 N -0.92 -27.45 10.09 55.49 0.56 -26.89 16
10 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16
11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16
13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
14 C 0.15 3.66 5.58 -2.53 -0.01 3.65 16
15 C 0.12 2.27 2.87 -65.78 -0.19 2.08 16
16 H 0.09 1.98 7.44 -51.93 -0.39 1.60 16
17 N -0.71 -10.68 5.20 -51.72 -0.27 -10.95 16
18 C 0.51 8.02 7.82 -10.98 -0.09 7.93 16
19 O -0.53 -11.08 15.67 5.56 0.09 -10.99 16
20 C -0.10 -1.06 5.86 -29.03 -0.17 -1.23 16
21 C -0.11 -1.39 4.39 -104.49 -0.46 -1.85 16
22 C -0.06 -0.73 9.86 -39.28 -0.39 -1.12 16
23 C -0.17 -1.91 10.11 -39.44 -0.40 -2.31 16
24 C 0.09 1.07 11.18 -17.54 -0.20 0.88 16
25 N -0.49 -6.67 10.36 -13.25 -0.14 -6.81 16
26 C 0.11 1.42 10.86 -17.55 -0.19 1.23 16
27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
29 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16
30 H 0.03 0.56 7.76 -51.93 -0.40 0.15 16
31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16
33 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16
34 H 0.11 3.21 5.87 -51.93 -0.31 2.91 16
35 H 0.39 4.47 8.57 -40.82 -0.35 4.12 16
36 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16
37 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16
38 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16
39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16
40 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16
41 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16
LS Contribution 341.93 15.07 5.15 5.15
Total: -1.00 -35.22 341.93 -8.56 -43.78
By element:
Atomic # 1 Polarization: 9.95 SS G_CDS: -6.05 Total: 3.91 kcal
Atomic # 6 Polarization: 3.91 SS G_CDS: -2.31 Total: 1.60 kcal
Atomic # 7 Polarization: -60.38 SS G_CDS: -0.42 Total: -60.81 kcal
Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal
Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -35.22 -8.56 -43.78 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079576068.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.309 kcal
(2) G-P(sol) polarization free energy of solvation -35.219 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds