Wall clock time and date at job start Tue Mar 31 2020 02:57:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08996 * 110.78191 * 2 1
4 4 C 1.54325 * 110.72375 * 236.75921 * 2 1 3
5 5 N 1.47019 * 107.27485 * 219.44395 * 4 2 1
6 6 C 1.36929 * 125.64784 * 178.98606 * 5 4 2
7 7 H 1.07997 * 120.00348 * 359.97438 * 6 5 4
8 8 C 1.38816 * 119.99928 * 179.97438 * 6 5 4
9 9 N 1.31617 * 120.00130 * 0.02562 * 8 6 5
10 10 Si 1.86802 * 119.99912 * 179.97438 * 8 6 5
11 11 H 1.48494 * 109.47079 * 90.00045 * 10 8 6
12 12 H 1.48505 * 109.47030 * 210.00059 * 10 8 6
13 13 H 1.48500 * 109.47561 * 329.99719 * 10 8 6
14 14 C 1.47423 * 108.70154 * 358.93746 * 5 4 2
15 15 C 1.54913 * 104.83633 * 24.13222 * 14 5 4
16 16 H 1.08998 * 111.03762 * 81.07178 * 15 14 5
17 17 N 1.46496 * 111.00510 * 204.91897 * 15 14 5
18 18 C 1.34774 * 119.99544 * 267.19114 * 17 15 14
19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 15
20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 15
21 21 C 1.50698 * 109.47294 * 180.02562 * 20 18 17
22 22 C 1.38666 * 120.42253 * 89.99629 * 21 20 18
23 23 C 1.38624 * 118.42373 * 180.02562 * 22 21 20
24 24 C 1.38231 * 119.16281 * 0.02562 * 23 22 21
25 25 N 1.31856 * 120.75979 * 0.02562 * 24 23 22
26 26 C 1.31889 * 121.72355 * 359.70106 * 25 24 23
27 27 H 1.09004 * 109.47211 * 296.76002 * 1 2 3
28 28 H 1.08992 * 109.47411 * 56.76140 * 1 2 3
29 29 H 1.09000 * 109.46963 * 176.76625 * 1 2 3
30 30 H 1.08998 * 109.87759 * 338.86313 * 4 2 1
31 31 H 1.09003 * 109.88213 * 100.02012 * 4 2 1
32 32 H 0.97002 * 120.00135 * 180.02562 * 9 8 6
33 33 H 1.09007 * 110.36915 * 265.29076 * 14 5 4
34 34 H 1.09007 * 110.36905 * 142.96726 * 14 5 4
35 35 H 0.96994 * 120.00700 * 87.19234 * 17 15 14
36 36 H 1.09001 * 109.46953 * 299.99667 * 20 18 17
37 37 H 1.09000 * 109.47318 * 59.99264 * 20 18 17
38 38 H 1.07999 * 120.78896 * 0.02562 * 22 21 20
39 39 H 1.07999 * 120.42497 * 180.02562 * 23 22 21
40 40 H 1.07999 * 119.62323 * 180.02562 * 24 23 22
41 41 H 1.08005 * 119.61253 * 180.30876 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9167 1.0190 0.0000
4 6 2.0760 -0.7912 -1.2072
5 7 3.2445 -1.5507 -0.7390
6 6 4.0044 -2.3967 -1.5018
7 1 3.7613 -2.5506 -2.5427
8 6 5.0872 -3.0567 -0.9370
9 7 5.3832 -2.8697 0.3317
10 14 6.1234 -4.2114 -1.9775
11 1 7.2325 -3.4502 -2.6063
12 1 6.6844 -5.2839 -1.1171
13 1 5.2769 -4.8181 -3.0361
14 6 3.4633 -1.2497 0.6875
15 6 2.0790 -0.7954 1.2139
16 1 1.4448 -1.6531 1.4380
17 7 2.2215 0.0697 2.3875
18 6 2.1874 -0.4627 3.6252
19 8 2.0391 -1.6580 3.7673
20 6 2.3334 0.4273 4.8326
21 6 2.2617 -0.4086 6.0844
22 6 3.4140 -0.9486 6.6352
23 6 3.3001 -1.7115 7.7870
24 6 2.0503 -1.9076 8.3441
25 7 0.9755 -1.3794 7.7924
26 6 1.0470 -0.6440 6.6998
27 1 -0.3634 0.4627 0.9176
28 1 -0.3634 0.5632 -0.8595
29 1 -0.3633 -1.0260 -0.0580
30 1 1.3130 -1.4758 -1.5775
31 1 2.3740 -0.1024 -1.9977
32 1 6.1401 -3.3306 0.7262
33 1 4.1932 -0.4477 0.7985
34 1 3.7960 -2.1425 1.2170
35 1 2.3404 1.0256 2.2739
36 1 3.2949 0.9391 4.7925
37 1 1.5299 1.1638 4.8404
38 1 4.3775 -0.7789 6.1776
39 1 4.1766 -2.1471 8.2434
40 1 1.9530 -2.5003 9.2417
41 1 0.1453 -0.2237 6.2794
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001079576068.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:57:18
Heat of formation + Delta-G solvation = -3.272894 kcal
Electronic energy + Delta-G solvation = -22748.723200 eV
Core-core repulsion = 19435.029546 eV
Total energy + Delta-G solvation = -3313.693654 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 289.153 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.39576 -40.53440 -39.07321 -35.62102 -34.55222 -34.20370 -32.80564 -32.16259
-30.05367 -28.47170 -27.31154 -25.32882 -24.48851 -23.55981 -22.15120 -21.56995
-20.85925 -18.93416 -18.12570 -17.92939 -17.42553 -17.32106 -16.90550 -16.04706
-15.83868 -15.57910 -15.26402 -14.73938 -14.40790 -14.32415 -14.20981 -14.12659
-13.93596 -13.91574 -13.37054 -13.10970 -13.03766 -12.85423 -12.58709 -12.43034
-12.20693 -12.01552 -11.84855 -11.64370 -11.41100 -11.00601 -10.78041 -10.65324
-10.40587 -9.93778 -9.87247 -8.91104 -7.79025 -5.25356 0.17542 0.37544
1.43417 1.46209 1.54864 1.73285 2.24954 2.48768 2.94003 3.30536
3.52668 3.68714 3.72503 3.76776 3.94868 4.05212 4.08642 4.10976
4.14086 4.15314 4.50683 4.55842 4.59797 4.63592 4.67405 4.78823
4.89226 4.90499 5.04386 5.09380 5.20595 5.23828 5.32022 5.34423
5.44908 5.50022 5.67779 5.80665 5.81312 6.27381 6.69076 7.03921
7.06354 7.40646 7.75697 8.37925 9.21395
Molecular weight = 289.15amu
Principal moments of inertia in cm(-1)
A = 0.016582 B = 0.004169 C = 0.003482
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1688.185145 B = 6714.922250 C = 8039.917726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.093 4.093
3 H 0.101 0.899
4 C 0.131 3.869
5 N -0.628 5.628
6 C -0.241 4.241
7 H 0.085 0.915
8 C -0.069 4.069
9 N -0.949 5.949
10 Si 0.981 3.019
11 H -0.282 1.282
12 H -0.297 1.297
13 H -0.267 1.267
14 C 0.156 3.844
15 C 0.137 3.863
16 H 0.062 0.938
17 N -0.700 5.700
18 C 0.508 3.492
19 O -0.588 6.588
20 C -0.085 4.085
21 C -0.124 4.124
22 C -0.079 4.079
23 C -0.174 4.174
24 C 0.081 3.919
25 N -0.513 5.513
26 C 0.095 3.905
27 H 0.071 0.929
28 H 0.077 0.923
29 H 0.041 0.959
30 H 0.027 0.973
31 H 0.033 0.967
32 H 0.244 0.756
33 H -0.006 1.006
34 H 0.058 0.942
35 H 0.417 0.583
36 H 0.130 0.870
37 H 0.145 0.855
38 H 0.141 0.859
39 H 0.158 0.842
40 H 0.178 0.822
41 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.597 12.127 11.313 18.242
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.112 4.112
3 H 0.119 0.881
4 C 0.006 3.994
5 N -0.354 5.354
6 C -0.370 4.370
7 H 0.103 0.897
8 C -0.261 4.261
9 N -0.599 5.599
10 Si 0.809 3.191
11 H -0.209 1.209
12 H -0.223 1.223
13 H -0.192 1.192
14 C 0.030 3.970
15 C 0.030 3.970
16 H 0.080 0.920
17 N -0.352 5.352
18 C 0.295 3.705
19 O -0.468 6.468
20 C -0.125 4.125
21 C -0.127 4.127
22 C -0.105 4.105
23 C -0.194 4.194
24 C -0.076 4.076
25 N -0.222 5.222
26 C -0.061 4.061
27 H 0.090 0.910
28 H 0.096 0.904
29 H 0.060 0.940
30 H 0.045 0.955
31 H 0.051 0.949
32 H 0.054 0.946
33 H 0.012 0.988
34 H 0.076 0.924
35 H 0.254 0.746
36 H 0.148 0.852
37 H 0.163 0.837
38 H 0.159 0.841
39 H 0.176 0.824
40 H 0.195 0.805
41 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -8.374 11.010 11.791 18.176
hybrid contribution 1.881 -0.556 -1.057 2.228
sum -6.494 10.454 10.734 16.330
Atomic orbital electron populations
1.21687 0.92114 1.01730 1.03133 1.22374 0.97336 0.99122 0.92364
0.88093 1.21621 0.88581 0.93298 0.95876 1.44703 1.32000 1.50914
1.07802 1.19501 1.06532 1.17443 0.93554 0.89748 1.25694 1.00377
1.02495 0.97565 1.70116 1.30069 1.47172 1.12499 0.85040 0.78614
0.78005 0.77463 1.20905 1.22328 1.19220 1.21891 0.92197 0.98219
0.84704 1.22101 0.96951 0.93012 0.84927 0.91976 1.45661 1.73450
1.11571 1.04499 1.21263 0.75142 0.88772 0.85283 1.90744 1.50674
1.18438 1.86899 1.20655 1.08315 0.96905 0.86653 1.20529 0.94699
1.00330 0.97101 1.21821 0.99281 0.94471 0.94954 1.22431 1.00238
0.99699 0.97000 1.23206 0.88016 0.96592 0.99749 1.67671 1.33755
1.09356 1.11429 1.22900 0.97451 0.94392 0.91393 0.90966 0.90400
0.93986 0.95487 0.94891 0.94599 0.98793 0.92371 0.74575 0.85187
0.83721 0.84081 0.82386 0.80506 0.81598
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.06 9.16 71.98 0.66 -2.40 16
2 C -0.09 -2.84 3.20 -9.60 -0.03 -2.87 16
3 H 0.10 2.58 8.00 -2.39 -0.02 2.57 16
4 C 0.13 5.28 6.84 86.73 0.59 5.87 16
5 N -0.63 -33.04 3.39 -691.98 -2.35 -35.39 16
6 C -0.24 -13.88 10.27 84.04 0.86 -13.02 16
7 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16
8 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16
9 N -0.95 -59.13 10.09 21.65 0.22 -58.91 16
10 Si 0.98 46.91 29.55 68.60 2.03 48.93 16
11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
12 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16
13 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16
14 C 0.16 7.96 5.58 86.86 0.48 8.44 16
15 C 0.14 5.21 2.87 46.39 0.13 5.34 16
16 H 0.06 2.76 7.44 -2.39 -0.02 2.75 16
17 N -0.70 -19.89 5.20 -435.95 -2.27 -22.15 16
18 C 0.51 15.48 7.82 87.66 0.69 16.17 16
19 O -0.59 -25.28 15.67 -3.02 -0.05 -25.32 16
20 C -0.09 -1.60 5.86 29.10 0.17 -1.43 16
21 C -0.12 -2.96 4.39 -19.78 -0.09 -3.05 16
22 C -0.08 -1.89 9.86 22.46 0.22 -1.67 16
23 C -0.17 -3.75 10.11 22.36 0.23 -3.52 16
24 C 0.08 1.83 11.18 84.69 0.95 2.78 16
25 N -0.51 -13.80 10.36 -195.83 -2.03 -15.83 16
26 C 0.10 2.37 10.86 84.67 0.92 3.29 16
27 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16
28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
29 H 0.04 1.13 8.06 -2.39 -0.02 1.11 16
30 H 0.03 1.09 7.76 -2.39 -0.02 1.07 16
31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16
32 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16
33 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16
34 H 0.06 3.60 5.87 -2.38 -0.01 3.58 16
35 H 0.42 8.10 8.57 -92.71 -0.79 7.30 16
36 H 0.13 1.82 8.09 -2.39 -0.02 1.80 16
37 H 0.14 1.53 8.09 -2.39 -0.02 1.51 16
38 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16
39 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16
40 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16
41 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16
Total: -1.00 -82.01 341.93 2.04 -79.97
By element:
Atomic # 1 Polarization: 18.12 SS G_CDS: 0.23 Total: 18.35 kcal
Atomic # 6 Polarization: 4.10 SS G_CDS: 6.25 Total: 10.35 kcal
Atomic # 7 Polarization: -125.86 SS G_CDS: -6.43 Total: -132.28 kcal
Atomic # 8 Polarization: -25.28 SS G_CDS: -0.05 Total: -25.32 kcal
Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal
Total: -82.01 2.04 -79.97 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079576068.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.696 kcal
(2) G-P(sol) polarization free energy of solvation -82.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.314 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.969 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.273 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds