Wall clock time and date at job start Tue Mar 31 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64370 * 2 1 4 4 C 1.54327 * 110.72129 * 236.85858 * 2 1 3 5 5 N 1.47022 * 107.26914 * 219.44390 * 4 2 1 6 6 C 1.36938 * 125.64324 * 178.90351 * 5 4 2 7 7 H 1.08001 * 119.99751 * 174.87683 * 6 5 4 8 8 C 1.38803 * 120.00306 * 354.87602 * 6 5 4 9 9 N 1.31618 * 120.00128 * 7.06528 * 8 6 5 10 10 Si 1.86800 * 120.00281 * 187.06176 * 8 6 5 11 11 H 1.48498 * 109.47137 * 94.98746 * 10 8 6 12 12 H 1.48496 * 109.47607 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47031 * 334.99199 * 10 8 6 14 14 C 1.47420 * 108.70668 * 358.93987 * 5 4 2 15 15 C 1.54908 * 104.83146 * 24.12732 * 14 5 4 16 16 H 1.09003 * 111.00465 * 81.06847 * 15 14 5 17 17 C 1.53000 * 111.00681 * 204.91923 * 15 14 5 18 18 N 1.46508 * 109.46903 * 287.19469 * 17 15 14 19 19 C 1.34777 * 119.99804 * 179.97438 * 18 17 15 20 20 O 1.21512 * 120.00219 * 0.02562 * 19 18 17 21 21 C 1.48168 * 119.99604 * 180.02562 * 19 18 17 22 22 C 1.39310 * 119.72181 * 179.73084 * 21 19 18 23 23 C 1.38589 * 119.05898 * 179.74965 * 22 21 19 24 24 C 1.38622 * 118.48817 * 0.51121 * 23 22 21 25 25 C 1.38559 * 119.35551 * 359.72656 * 24 23 22 26 26 N 1.31532 * 120.89932 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46780 * 181.68734 * 1 2 3 28 28 H 1.09004 * 109.47114 * 301.68948 * 1 2 3 29 29 H 1.09002 * 109.46934 * 61.68424 * 1 2 3 30 30 H 1.08997 * 109.87971 * 338.86036 * 4 2 1 31 31 H 1.09003 * 109.88228 * 99.86957 * 4 2 1 32 32 H 0.97001 * 120.00287 * 179.97438 * 9 8 6 33 33 H 1.08998 * 110.37255 * 142.96688 * 14 5 4 34 34 H 1.09002 * 110.36941 * 265.29150 * 14 5 4 35 35 H 1.09000 * 109.47361 * 47.19562 * 17 15 14 36 36 H 1.08997 * 109.47508 * 167.19888 * 17 15 14 37 37 H 0.96996 * 119.99528 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.47276 * 359.97438 * 22 21 19 39 39 H 1.08004 * 120.75750 * 180.23919 * 23 22 21 40 40 H 1.08007 * 120.32355 * 179.75113 * 24 23 22 41 41 H 1.07997 * 119.55605 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 4.0035 -2.3954 -1.5055 7 1 4.8934 -2.8455 -1.0909 8 6 3.6290 -2.6746 -2.8126 9 7 2.6274 -2.0224 -3.3638 10 14 4.5467 -3.9757 -3.7896 11 1 3.8304 -5.2720 -3.6823 12 1 4.6178 -3.5659 -5.2151 13 1 5.9214 -4.1235 -3.2478 14 6 3.4633 -1.2509 0.6854 15 6 2.0790 -0.7975 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 7 2.6328 -0.7040 3.5928 19 6 2.8259 -0.1186 4.7913 20 8 2.6636 1.0792 4.9157 21 6 3.2361 -0.9357 5.9573 22 6 3.4395 -0.3238 7.1922 23 6 3.8179 -1.1020 8.2748 24 6 3.9901 -2.4639 8.0821 25 6 3.7753 -3.0045 6.8246 26 7 3.4117 -2.2435 5.8153 27 1 -0.3633 -1.0272 0.0303 28 1 -0.3633 0.5399 0.8745 29 1 -0.3633 0.4875 -0.9047 30 1 1.3130 -1.4731 -1.5800 31 1 2.3716 -0.0991 -1.9990 32 1 2.3659 -2.2172 -4.2773 33 1 3.7961 -2.1446 1.2133 34 1 4.1932 -0.4492 0.7977 35 1 2.9854 0.8627 2.2436 36 1 1.2749 0.5884 2.6524 37 1 2.7627 -1.6601 3.4934 38 1 3.3008 0.7412 7.3052 39 1 3.9792 -0.6567 9.2455 40 1 4.2885 -3.0975 8.9044 41 1 3.9081 -4.0652 6.6709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092417816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:09 Heat of formation + Delta-G solvation = -3.265275 kcal Electronic energy + Delta-G solvation = -22398.641290 eV Core-core repulsion = 19084.947966 eV Total energy + Delta-G solvation = -3313.693324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59335 -40.24012 -39.40575 -36.12965 -34.74110 -33.51813 -32.56015 -32.45750 -30.70149 -27.89419 -26.89589 -25.51467 -24.49030 -24.06050 -22.01590 -21.60880 -20.82937 -19.25311 -18.70118 -17.76982 -17.21818 -16.77000 -16.54058 -16.40873 -16.08093 -15.71208 -15.49024 -15.01107 -14.75722 -14.47077 -14.34965 -14.14784 -14.01380 -13.44390 -13.28221 -13.10410 -12.88451 -12.87184 -12.69015 -12.41569 -11.94218 -11.86091 -11.62600 -11.53947 -11.38246 -11.20161 -10.93617 -10.68486 -10.51250 -10.31237 -10.01770 -8.89179 -7.85721 -5.20308 -0.34200 0.28383 1.45567 1.47547 1.56464 1.70513 2.05843 2.49422 2.89773 3.14805 3.31641 3.59834 3.72743 3.87877 3.92197 3.94783 4.00143 4.07900 4.12782 4.35649 4.47626 4.52900 4.59541 4.73114 4.76743 4.79906 4.84161 4.95833 5.07758 5.09284 5.13708 5.18368 5.32518 5.35719 5.45113 5.48109 5.66586 5.71088 5.81773 6.20373 6.37692 6.81015 7.09728 7.10619 7.77868 8.43219 9.25014 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003483 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.462074 B = 8036.964413 C = 9120.813593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.245 4.245 7 H 0.081 0.919 8 C -0.065 4.065 9 N -0.949 5.949 10 Si 0.978 3.022 11 H -0.285 1.285 12 H -0.295 1.295 13 H -0.268 1.268 14 C 0.138 3.862 15 C -0.090 4.090 16 H 0.087 0.913 17 C 0.142 3.858 18 N -0.700 5.700 19 C 0.564 3.436 20 O -0.571 6.571 21 C 0.050 3.950 22 C -0.122 4.122 23 C -0.079 4.079 24 C -0.135 4.135 25 C 0.086 3.914 26 N -0.483 5.483 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.019 0.981 31 H -0.001 1.001 32 H 0.247 0.753 33 H 0.043 0.957 34 H 0.017 0.983 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.145 0.855 39 H 0.176 0.824 40 H 0.180 0.820 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 -0.167 24.908 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.095 0.905 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.374 4.374 7 H 0.098 0.902 8 C -0.258 4.258 9 N -0.597 5.597 10 Si 0.806 3.194 11 H -0.212 1.212 12 H -0.222 1.222 13 H -0.193 1.193 14 C 0.013 3.987 15 C -0.110 4.110 16 H 0.105 0.895 17 C 0.018 3.982 18 N -0.350 5.350 19 C 0.350 3.650 20 O -0.451 6.451 21 C -0.087 4.087 22 C -0.143 4.143 23 C -0.104 4.104 24 C -0.155 4.155 25 C -0.073 4.073 26 N -0.195 5.195 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.017 0.983 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.253 0.747 38 H 0.162 0.838 39 H 0.194 0.806 40 H 0.198 0.802 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.686 0.264 23.902 23.913 hybrid contribution 0.675 -0.581 -0.577 1.060 sum -0.011 -0.317 23.326 23.328 Atomic orbital electron populations 1.21643 0.92891 1.01732 1.02208 1.22319 0.97068 0.98597 0.93997 0.90496 1.20997 0.88202 0.91930 0.92273 1.44792 1.32825 1.51401 1.06456 1.19456 1.04947 1.18614 0.94408 0.90152 1.25665 0.99808 1.02042 0.98263 1.70200 1.31798 1.44003 1.13732 0.85070 0.78217 0.78733 0.77387 1.21226 1.22174 1.19304 1.21737 0.95093 0.97359 0.84515 1.22465 0.97052 0.98292 0.93177 0.89499 1.21277 1.00701 0.93049 0.83149 1.45890 1.67540 1.13166 1.08424 1.18302 0.76964 0.86550 0.83167 1.90740 1.53751 1.15487 1.85129 1.20979 1.02705 0.91049 0.93964 1.22284 0.97181 1.02566 0.92315 1.22068 0.94689 0.94015 0.99656 1.22854 0.97035 0.96226 0.99339 1.23430 0.94251 1.01159 0.88499 1.67509 1.11236 1.04834 1.35937 0.93269 0.90540 0.92661 0.96311 0.98266 0.94388 0.93819 0.96559 0.91902 0.90139 0.74740 0.83760 0.80645 0.80238 0.79485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.13 71.98 0.66 -3.22 16 2 C -0.10 -3.67 3.01 -9.60 -0.03 -3.70 16 3 H 0.08 2.70 8.04 -2.39 -0.02 2.68 16 4 C 0.19 9.61 4.98 86.73 0.43 10.04 16 5 N -0.63 -33.16 3.39 -692.00 -2.35 -35.51 16 6 C -0.25 -14.10 10.26 84.03 0.86 -13.24 16 7 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 8 C -0.06 -3.75 5.48 84.86 0.46 -3.29 16 9 N -0.95 -58.05 10.36 21.65 0.22 -57.82 16 10 Si 0.98 46.47 29.56 68.60 2.03 48.49 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.14 5.75 6.65 86.86 0.58 6.33 16 15 C -0.09 -3.04 2.49 -9.40 -0.02 -3.07 16 16 H 0.09 2.88 8.04 -2.39 -0.02 2.86 16 17 C 0.14 4.18 5.14 86.38 0.44 4.62 16 18 N -0.70 -19.87 5.49 -465.65 -2.56 -22.42 16 19 C 0.56 16.77 7.81 86.88 0.68 17.44 16 20 O -0.57 -19.83 16.32 -3.75 -0.06 -19.89 16 21 C 0.05 1.22 6.75 41.91 0.28 1.51 16 22 C -0.12 -2.33 9.63 22.61 0.22 -2.11 16 23 C -0.08 -0.88 10.17 22.45 0.23 -0.65 16 24 C -0.14 -1.25 10.11 22.44 0.23 -1.03 16 25 C 0.09 1.25 11.18 84.81 0.95 2.19 16 26 N -0.48 -10.79 9.54 -184.91 -1.76 -12.56 16 27 H 0.05 1.54 8.13 -2.39 -0.02 1.53 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.02 1.05 6.98 -2.39 -0.02 1.03 16 31 H 0.00 -0.05 7.61 -2.39 -0.02 -0.07 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.02 0.70 7.91 -2.39 -0.02 0.68 16 35 H 0.06 1.98 7.96 -2.39 -0.02 1.96 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.42 11.25 7.80 -92.71 -0.72 10.53 16 38 H 0.14 2.74 7.64 -2.91 -0.02 2.71 16 39 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -74.90 341.79 1.79 -73.11 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.30 Total: 14.77 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.97 Total: 11.83 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -6.45 Total: -128.31 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -74.90 1.79 -73.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092417816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.843 kcal (2) G-P(sol) polarization free energy of solvation -74.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds