Wall clock time and date at job start Tue Mar 31 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.88737 * 2 1 4 4 C 1.54914 * 111.00205 * 236.12212 * 2 1 3 5 5 N 1.47426 * 104.82992 * 204.91932 * 4 2 1 6 6 C 1.36936 * 125.64583 * 204.09666 * 5 4 2 7 7 H 1.07997 * 119.99931 * 180.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 0.03301 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47090 * 90.00295 * 10 8 6 12 12 H 1.48500 * 109.46944 * 210.00181 * 10 8 6 13 13 H 1.48498 * 109.47226 * 330.00384 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09000 * 110.72188 * 96.24097 * 15 14 5 17 17 C 1.52995 * 110.72304 * 219.52316 * 15 14 5 18 18 N 1.46500 * 109.46848 * 293.54475 * 17 15 14 19 19 C 1.34783 * 119.99855 * 179.97438 * 18 17 15 20 20 O 1.21513 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.48144 * 119.99853 * 179.97438 * 19 18 17 22 22 C 1.39818 * 120.92222 * 359.72301 * 21 19 18 23 23 C 1.38160 * 119.00159 * 179.79266 * 22 21 19 24 24 N 1.31817 * 120.89354 * 0.49281 * 23 22 21 25 25 C 1.31814 * 122.04481 * 359.73172 * 24 23 22 26 26 C 1.38143 * 120.90171 * 0.02802 * 25 24 23 27 27 H 1.08997 * 109.47294 * 182.42358 * 1 2 3 28 28 H 1.08997 * 109.47279 * 302.43037 * 1 2 3 29 29 H 1.09006 * 109.47100 * 62.42832 * 1 2 3 30 30 H 1.08999 * 110.37121 * 86.07667 * 4 2 1 31 31 H 1.09001 * 110.45739 * 323.80279 * 4 2 1 32 32 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 34 34 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 35 35 H 1.08999 * 109.47410 * 53.54449 * 17 15 14 36 36 H 1.08997 * 109.47486 * 173.54242 * 17 15 14 37 37 H 0.96999 * 119.99864 * 359.97438 * 18 17 15 38 38 H 1.07996 * 120.50292 * 359.97438 * 22 21 19 39 39 H 1.07995 * 119.55146 * 180.22442 * 23 22 21 40 40 H 1.08002 * 119.54298 * 180.02562 * 25 24 23 41 41 H 1.08005 * 120.49972 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4639 -1.5661 -1.6079 7 1 5.4124 -1.8765 -1.1950 8 6 4.2960 -1.4946 -2.9840 9 7 3.1404 -1.1156 -3.4871 10 14 5.7103 -1.9362 -4.1216 11 1 5.6554 -3.3857 -4.4400 12 1 5.6005 -1.1493 -5.3763 13 1 6.9992 -1.6247 -3.4531 14 6 3.4674 -1.2745 0.6954 15 6 2.0879 -0.8070 1.2052 16 1 1.4482 -1.6616 1.4256 17 6 2.2407 0.0885 2.4363 18 7 2.7694 -0.7007 3.5516 19 6 2.9878 -0.1166 4.7465 20 8 2.7457 1.0644 4.8988 21 6 3.5220 -0.9148 5.8744 22 6 3.8008 -2.2764 5.7225 23 6 4.3020 -2.9818 6.7996 24 7 4.5080 -2.3901 7.9594 25 6 4.2543 -1.1102 8.1464 26 6 3.7559 -0.3287 7.1221 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3634 0.5511 0.8674 29 1 -0.3633 0.4757 -0.9110 30 1 2.1559 -0.1712 -2.0838 31 1 1.4524 -1.6698 -1.4050 32 1 3.0231 -1.0653 -4.4487 33 1 3.6650 -2.2899 1.0391 34 1 4.2444 -0.6023 1.0595 35 1 2.9282 0.9035 2.2097 36 1 1.2687 0.4988 2.7101 37 1 2.9623 -1.6435 3.4300 38 1 3.6299 -2.7688 4.7766 39 1 4.5240 -4.0331 6.6911 40 1 4.4386 -0.6666 9.1137 41 1 3.5499 0.7193 7.2826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092430373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:16 Heat of formation + Delta-G solvation = 20.429166 kcal Electronic energy + Delta-G solvation = -22414.643950 eV Core-core repulsion = 19101.978095 eV Total energy + Delta-G solvation = -3312.665856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78978 -39.29354 -37.98714 -34.87224 -33.26064 -32.70124 -31.54829 -30.79874 -29.32959 -26.21091 -25.51727 -24.50456 -23.70760 -22.69456 -20.98860 -19.90336 -19.50188 -18.33925 -16.89741 -16.78866 -16.01082 -15.78045 -15.54210 -15.32863 -14.89394 -14.40100 -14.10662 -13.99191 -13.77484 -13.57572 -13.18304 -12.80562 -12.67665 -12.07695 -11.93809 -11.60250 -11.49264 -11.19671 -10.92438 -10.83232 -10.52241 -10.22767 -10.19538 -10.05510 -9.97131 -9.87040 -9.74308 -9.53302 -9.43754 -9.10126 -8.69093 -6.87973 -5.69385 -3.11396 0.43664 0.76447 2.72584 2.96564 3.37175 3.42387 3.44322 3.58602 4.09624 4.31875 4.44052 4.48210 4.64988 4.75501 5.01683 5.15864 5.19667 5.22950 5.42070 5.45413 5.49569 5.53554 5.68633 5.73699 5.82534 5.99178 6.03896 6.14367 6.20167 6.25128 6.32512 6.47493 6.54168 6.55180 6.72874 6.88020 7.34927 7.49091 7.57244 7.58871 7.82249 8.01409 8.32246 9.17997 9.78769 10.43270 11.34335 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020015 B = 0.003447 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.631002 B = 8120.251253 C = 9091.640831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.604 5.604 6 C -0.224 4.224 7 H 0.077 0.923 8 C -0.010 4.010 9 N -0.921 5.921 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.112 4.112 16 H 0.077 0.923 17 C 0.132 3.868 18 N -0.714 5.714 19 C 0.554 3.446 20 O -0.533 6.533 21 C -0.084 4.084 22 C -0.141 4.141 23 C 0.096 3.904 24 N -0.473 5.473 25 C 0.094 3.906 26 C -0.117 4.117 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.013 0.987 32 H 0.252 0.748 33 H 0.017 0.983 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -1.083 18.125 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.353 4.353 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.014 3.986 15 C -0.131 4.131 16 H 0.096 0.904 17 C 0.009 3.991 18 N -0.365 5.365 19 C 0.339 3.661 20 O -0.410 6.410 21 C -0.095 4.095 22 C -0.162 4.162 23 C -0.060 4.060 24 N -0.182 5.182 25 C -0.063 4.063 26 C -0.138 4.138 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.237 0.763 38 H 0.159 0.841 39 H 0.180 0.820 40 H 0.180 0.820 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.333 -0.723 18.645 18.804 hybrid contribution 0.489 -0.336 -1.409 1.529 sum -1.844 -1.059 17.236 17.367 Atomic orbital electron populations 1.21654 0.95443 1.01232 1.00921 1.22651 0.94624 0.99539 0.96211 0.90990 1.21987 0.84013 0.95935 0.94654 1.44472 1.10587 1.79000 0.98927 1.19069 0.91072 1.37912 0.87221 0.90540 1.24789 0.97304 1.01872 0.96626 1.69788 1.22441 1.53650 1.11105 0.86074 0.81210 0.77831 0.80390 1.21615 1.21612 1.20692 1.21325 0.93408 0.97041 0.86780 1.22561 0.98734 0.98182 0.93602 0.90416 1.21520 0.99065 0.94156 0.84337 1.46001 1.65449 1.14180 1.10891 1.18175 0.78388 0.86951 0.82566 1.90779 1.51645 1.15414 1.83191 1.20466 0.99790 0.94207 0.95027 1.22429 0.98808 0.93809 1.01141 1.22794 0.94890 1.00585 0.87759 1.67574 1.14305 1.11783 1.24542 1.22821 0.94946 0.89327 0.99167 1.22340 0.97013 1.02288 0.92147 0.93014 0.93658 0.92511 0.87566 0.96865 0.93687 0.96498 0.95829 0.90933 0.91276 0.76283 0.84099 0.81982 0.82010 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.30 37.16 0.35 -1.65 16 2 C -0.11 -1.96 3.09 -88.33 -0.27 -2.23 16 3 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 4 C 0.16 3.71 5.36 -2.53 -0.01 3.69 16 5 N -0.60 -15.02 3.39 -170.07 -0.58 -15.59 16 6 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 10 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.14 2.75 6.52 -3.07 -0.02 2.73 16 15 C -0.11 -1.76 2.50 -88.65 -0.22 -1.99 16 16 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 17 C 0.13 1.87 5.00 -4.04 -0.02 1.85 16 18 N -0.71 -8.83 5.36 -61.16 -0.33 -9.15 16 19 C 0.55 7.41 7.80 -12.19 -0.10 7.32 16 20 O -0.53 -8.89 16.45 5.35 0.09 -8.80 16 21 C -0.08 -0.92 5.91 -104.65 -0.62 -1.54 16 22 C -0.14 -1.26 9.62 -39.02 -0.38 -1.63 16 23 C 0.10 0.84 11.17 -17.59 -0.20 0.64 16 24 N -0.47 -4.77 10.34 -13.30 -0.14 -4.91 16 25 C 0.09 0.84 11.17 -17.59 -0.20 0.64 16 26 C -0.12 -1.17 9.68 -39.03 -0.38 -1.54 16 27 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.11 2.83 5.87 -51.93 -0.30 2.53 16 31 H 0.01 0.33 8.04 -51.93 -0.42 -0.09 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 35 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 4.12 6.47 -40.82 -0.26 3.86 16 38 H 0.14 0.95 6.54 -52.49 -0.34 0.61 16 39 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.15 1.38 7.74 -52.48 -0.41 0.98 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -32.49 338.88 -8.52 -41.01 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.90 Total: 1.82 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.31 Total: -0.40 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.48 Total: -55.51 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.49 -8.52 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092430373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.442 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds