Wall clock time and date at job start Tue Mar 31 2020 02:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.88737 * 2 1 4 4 C 1.54914 * 111.00205 * 236.12212 * 2 1 3 5 5 N 1.47426 * 104.82992 * 204.91932 * 4 2 1 6 6 C 1.36936 * 125.64583 * 204.09666 * 5 4 2 7 7 H 1.07997 * 119.99931 * 180.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 0.03301 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47090 * 90.00295 * 10 8 6 12 12 H 1.48500 * 109.46944 * 210.00181 * 10 8 6 13 13 H 1.48498 * 109.47226 * 330.00384 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09000 * 110.72188 * 96.24097 * 15 14 5 17 17 C 1.52995 * 110.72304 * 219.52316 * 15 14 5 18 18 N 1.46500 * 109.46848 * 293.54475 * 17 15 14 19 19 C 1.34783 * 119.99855 * 179.97438 * 18 17 15 20 20 O 1.21513 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.48144 * 119.99853 * 179.97438 * 19 18 17 22 22 C 1.39818 * 120.92222 * 359.72301 * 21 19 18 23 23 C 1.38160 * 119.00159 * 179.79266 * 22 21 19 24 24 N 1.31817 * 120.89354 * 0.49281 * 23 22 21 25 25 C 1.31814 * 122.04481 * 359.73172 * 24 23 22 26 26 C 1.38143 * 120.90171 * 0.02802 * 25 24 23 27 27 H 1.08997 * 109.47294 * 182.42358 * 1 2 3 28 28 H 1.08997 * 109.47279 * 302.43037 * 1 2 3 29 29 H 1.09006 * 109.47100 * 62.42832 * 1 2 3 30 30 H 1.08999 * 110.37121 * 86.07667 * 4 2 1 31 31 H 1.09001 * 110.45739 * 323.80279 * 4 2 1 32 32 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 34 34 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 35 35 H 1.08999 * 109.47410 * 53.54449 * 17 15 14 36 36 H 1.08997 * 109.47486 * 173.54242 * 17 15 14 37 37 H 0.96999 * 119.99864 * 359.97438 * 18 17 15 38 38 H 1.07996 * 120.50292 * 359.97438 * 22 21 19 39 39 H 1.07995 * 119.55146 * 180.22442 * 23 22 21 40 40 H 1.08002 * 119.54298 * 180.02562 * 25 24 23 41 41 H 1.08005 * 120.49972 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4639 -1.5661 -1.6079 7 1 5.4124 -1.8765 -1.1950 8 6 4.2960 -1.4946 -2.9840 9 7 3.1404 -1.1156 -3.4871 10 14 5.7103 -1.9362 -4.1216 11 1 5.6554 -3.3857 -4.4400 12 1 5.6005 -1.1493 -5.3763 13 1 6.9992 -1.6247 -3.4531 14 6 3.4674 -1.2745 0.6954 15 6 2.0879 -0.8070 1.2052 16 1 1.4482 -1.6616 1.4256 17 6 2.2407 0.0885 2.4363 18 7 2.7694 -0.7007 3.5516 19 6 2.9878 -0.1166 4.7465 20 8 2.7457 1.0644 4.8988 21 6 3.5220 -0.9148 5.8744 22 6 3.8008 -2.2764 5.7225 23 6 4.3020 -2.9818 6.7996 24 7 4.5080 -2.3901 7.9594 25 6 4.2543 -1.1102 8.1464 26 6 3.7559 -0.3287 7.1221 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3634 0.5511 0.8674 29 1 -0.3633 0.4757 -0.9110 30 1 2.1559 -0.1712 -2.0838 31 1 1.4524 -1.6698 -1.4050 32 1 3.0231 -1.0653 -4.4487 33 1 3.6650 -2.2899 1.0391 34 1 4.2444 -0.6023 1.0595 35 1 2.9282 0.9035 2.2097 36 1 1.2687 0.4988 2.7101 37 1 2.9623 -1.6435 3.4300 38 1 3.6299 -2.7688 4.7766 39 1 4.5240 -4.0331 6.6911 40 1 4.4386 -0.6666 9.1137 41 1 3.5499 0.7193 7.2826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092430373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:15 Heat of formation + Delta-G solvation = -0.917820 kcal Electronic energy + Delta-G solvation = -22415.569625 eV Core-core repulsion = 19101.978095 eV Total energy + Delta-G solvation = -3313.591531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63753 -40.31914 -39.43911 -36.19681 -34.80038 -33.68190 -32.55715 -32.24742 -30.71297 -27.91985 -26.91945 -25.62516 -24.55044 -24.04912 -22.09355 -21.46354 -20.86776 -19.35035 -18.77024 -17.72490 -17.16736 -16.68412 -16.55108 -16.43060 -16.26313 -15.80641 -15.55282 -14.90372 -14.84351 -14.64389 -14.48655 -14.29326 -14.00422 -13.55289 -13.39274 -13.03213 -12.75237 -12.70905 -12.68190 -12.45205 -11.97530 -11.86359 -11.66737 -11.49215 -11.39971 -11.09800 -11.00556 -10.74067 -10.52616 -10.19649 -10.19004 -8.87538 -7.77226 -5.21430 -0.35617 0.09954 1.46543 1.47871 1.56559 1.78133 1.96292 2.49230 2.84920 3.32022 3.43975 3.51347 3.62492 3.76925 3.84137 3.86674 3.95464 3.97493 4.07598 4.36148 4.49816 4.54262 4.60881 4.73559 4.75299 4.81678 4.82127 4.85111 4.96561 5.04581 5.09639 5.14619 5.29313 5.38524 5.39910 5.50528 5.61205 5.72898 5.85120 6.32227 6.37400 6.89929 7.01497 7.11603 7.79525 8.42745 9.24188 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020015 B = 0.003447 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.631002 B = 8120.251253 C = 9091.640831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.065 0.935 4 C 0.162 3.838 5 N -0.629 5.629 6 C -0.239 4.239 7 H 0.080 0.920 8 C -0.067 4.067 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.271 1.271 14 C 0.136 3.864 15 C -0.090 4.090 16 H 0.098 0.902 17 C 0.144 3.856 18 N -0.706 5.706 19 C 0.555 3.445 20 O -0.572 6.572 21 C -0.102 4.102 22 C -0.136 4.136 23 C 0.094 3.906 24 N -0.491 5.491 25 C 0.095 3.905 26 C -0.125 4.125 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.067 0.933 31 H -0.009 1.009 32 H 0.246 0.754 33 H 0.031 0.969 34 H 0.019 0.981 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.163 0.837 39 H 0.191 0.809 40 H 0.189 0.811 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.417 -2.137 19.928 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.084 0.916 4 C 0.037 3.963 5 N -0.354 5.354 6 C -0.368 4.368 7 H 0.098 0.902 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.806 3.194 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.196 1.196 14 C 0.011 3.989 15 C -0.109 4.109 16 H 0.117 0.883 17 C 0.020 3.980 18 N -0.357 5.357 19 C 0.342 3.658 20 O -0.452 6.452 21 C -0.113 4.113 22 C -0.156 4.156 23 C -0.062 4.062 24 N -0.200 5.200 25 C -0.061 4.061 26 C -0.146 4.146 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.009 0.991 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.251 0.749 38 H 0.180 0.820 39 H 0.207 0.793 40 H 0.205 0.795 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.207 -1.805 20.482 20.679 hybrid contribution 0.487 -0.036 -1.928 1.988 sum -1.721 -1.840 18.554 18.724 Atomic orbital electron populations 1.21607 0.92738 1.02095 1.02103 1.22481 0.96749 0.98362 0.94464 0.91641 1.21754 0.83723 0.94967 0.95858 1.44795 1.10491 1.79027 1.01130 1.19443 0.92010 1.37330 0.88051 0.90243 1.25610 0.99675 1.02505 0.98133 1.70054 1.24124 1.54785 1.10767 0.85081 0.78818 0.77329 0.78123 1.21255 1.22098 1.19576 1.21513 0.95559 0.97762 0.84044 1.22396 0.96581 0.98639 0.93313 0.88348 1.21266 0.99354 0.93338 0.84047 1.45857 1.65024 1.14624 1.10214 1.18514 0.77588 0.86615 0.83069 1.90757 1.53424 1.17145 1.83856 1.20392 1.01308 0.95064 0.94533 1.22644 0.97922 0.92845 1.02213 1.23285 0.93972 1.01808 0.87165 1.67644 1.14757 1.12279 1.25351 1.23210 0.94034 0.88984 0.99913 1.22452 0.97334 1.02539 0.92280 0.92452 0.90783 0.92904 0.91468 0.99074 0.94379 0.95072 0.96271 0.92671 0.90112 0.74878 0.81966 0.79262 0.79452 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.30 71.98 0.67 -2.87 16 2 C -0.10 -3.49 3.09 -9.31 -0.03 -3.52 16 3 H 0.07 2.36 8.05 -2.39 -0.02 2.35 16 4 C 0.16 7.72 5.36 86.86 0.47 8.19 16 5 N -0.63 -31.52 3.39 -691.98 -2.35 -33.87 16 6 C -0.24 -13.25 10.27 84.04 0.86 -12.39 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 8 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 9 N -0.95 -56.00 10.09 21.65 0.22 -55.78 16 10 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 C 0.14 5.18 6.52 86.73 0.57 5.74 16 15 C -0.09 -2.68 2.50 -9.52 -0.02 -2.70 16 16 H 0.10 2.59 8.02 -2.39 -0.02 2.57 16 17 C 0.14 3.77 5.00 86.38 0.43 4.20 16 18 N -0.71 -15.93 5.36 -465.69 -2.50 -18.43 16 19 C 0.55 14.12 7.80 86.87 0.68 14.80 16 20 O -0.57 -18.75 16.45 -3.76 -0.06 -18.81 16 21 C -0.10 -2.07 5.91 -19.88 -0.12 -2.19 16 22 C -0.14 -2.06 9.62 22.63 0.22 -1.85 16 23 C 0.09 1.37 11.17 84.68 0.95 2.32 16 24 N -0.49 -8.78 10.34 -196.00 -2.03 -10.80 16 25 C 0.09 1.51 11.17 84.67 0.95 2.45 16 26 C -0.13 -2.34 9.68 22.63 0.22 -2.12 16 27 H 0.06 1.53 8.11 -2.39 -0.02 1.51 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 3.75 5.87 -2.39 -0.01 3.73 16 31 H -0.01 -0.44 8.04 -2.39 -0.02 -0.46 16 32 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.02 0.75 7.76 -2.39 -0.02 0.73 16 35 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.41 7.29 6.47 -92.71 -0.60 6.69 16 38 H 0.16 1.64 6.54 -2.91 -0.02 1.62 16 39 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.15 2.69 7.74 -2.91 -0.02 2.66 16 Total: -1.00 -71.98 338.88 2.04 -69.94 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.43 Total: 13.64 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 6.30 Total: 6.78 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.65 Total: -118.89 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.81 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.98 2.04 -69.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092430373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.020 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds