Wall clock time and date at job start Tue Mar 31 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48506 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47072 * 299.99433 * 3 2 1 6 6 H 1.48497 * 109.47321 * 60.00176 * 3 2 1 7 7 C 1.38811 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00034 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47273 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47555 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 H 1.08993 * 110.72788 * 59.01945 * 16 14 13 18 18 C 1.54369 * 110.82251 * 182.43022 * 16 14 13 19 19 C 1.51220 * 105.12223 * 144.51051 * 18 16 14 20 20 C 1.38739 * 130.69717 * 162.91690 * 19 18 16 21 21 C 1.38576 * 118.55824 * 180.02562 * 20 19 18 22 22 C 1.38219 * 118.99052 * 359.97438 * 21 20 19 23 23 N 1.31690 * 120.80324 * 359.97438 * 22 21 20 24 24 C 1.32292 * 122.02949 * 0.02562 * 23 22 21 25 25 C 1.51782 * 130.06279 * 179.85705 * 24 23 22 26 26 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 27 27 H 0.97005 * 120.00160 * 0.02562 * 9 7 2 28 28 H 1.08992 * 109.47032 * 60.00622 * 10 9 7 29 29 H 1.08997 * 109.47284 * 300.00186 * 10 9 7 30 30 H 1.08998 * 109.47307 * 59.99732 * 11 10 9 31 31 H 1.09005 * 109.46653 * 299.99667 * 11 10 9 32 32 H 1.08998 * 109.47382 * 59.99521 * 12 11 10 33 33 H 1.09002 * 109.47216 * 299.99958 * 12 11 10 34 34 H 0.97000 * 119.99484 * 359.97438 * 13 12 11 35 35 H 1.09007 * 110.30671 * 263.41968 * 18 16 14 36 36 H 1.09001 * 110.31327 * 25.49640 * 18 16 14 37 37 H 1.08002 * 120.72082 * 359.97092 * 20 19 18 38 38 H 1.08000 * 120.50284 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.60279 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.25128 * 78.27683 * 25 24 23 41 41 H 1.09004 * 110.48688 * 316.05071 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8289 -6.1447 -0.0005 13 7 0.8769 -7.2583 -0.0005 14 6 1.3262 -8.5289 0.0005 15 8 2.5186 -8.7505 0.0010 16 6 0.3469 -9.6744 -0.0058 17 1 -0.2980 -9.6257 -0.8830 18 6 1.0857 -11.0283 0.0579 19 6 0.2001 -11.9219 0.8969 20 6 0.1799 -13.3022 1.0360 21 6 -0.7551 -13.8685 1.8877 22 6 -1.6306 -13.0418 2.5662 23 7 -1.5821 -11.7351 2.4105 24 6 -0.7047 -11.1564 1.6072 25 6 -0.4900 -9.6874 1.2910 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 2.6847 -3.7145 0.8894 29 1 2.6848 -3.7145 -0.8905 30 1 0.4376 -4.7617 -0.8913 31 1 0.4370 -4.7621 0.8887 32 1 2.4550 -6.2024 0.8898 33 1 2.4562 -6.2025 -0.8901 34 1 -0.0767 -7.0810 -0.0005 35 1 1.2020 -11.4432 -0.9434 36 1 2.0598 -10.9060 0.5316 37 1 0.8772 -13.9218 0.4917 38 1 -0.7989 -14.9396 2.0193 39 1 -2.3636 -13.4727 3.2322 40 1 0.0577 -9.2035 2.0997 41 1 -1.4456 -9.1885 1.1290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174746050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:22 Heat of formation + Delta-G solvation = -1.970819 kcal Electronic energy + Delta-G solvation = -21318.920011 eV Core-core repulsion = 18005.282819 eV Total energy + Delta-G solvation = -3313.637192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25968 -39.72219 -36.51838 -35.87081 -34.39932 -33.01730 -32.03871 -30.31541 -29.25326 -28.16993 -25.69590 -24.21669 -22.65195 -22.22693 -21.75240 -21.21180 -19.96352 -17.64982 -17.03871 -16.96718 -16.69694 -16.09941 -15.67102 -15.19913 -15.09266 -14.54984 -14.41028 -13.86838 -13.61401 -13.32542 -13.29598 -13.24291 -13.06188 -12.81126 -12.40256 -12.10697 -11.78525 -11.72601 -11.57502 -10.98063 -10.94308 -10.79080 -10.64452 -10.12926 -10.07438 -9.92612 -9.71376 -9.65925 -9.13073 -9.06870 -8.89637 -6.94648 -5.78383 -3.07328 0.71798 0.91422 2.43877 3.00807 3.39178 3.43031 3.48782 3.51040 3.54128 4.03377 4.25890 4.46740 4.53714 4.55396 4.58253 4.76951 4.84502 4.93101 5.11635 5.17997 5.28242 5.30294 5.37533 5.39129 5.56267 5.57398 5.60205 5.70042 5.79270 5.85615 5.95651 6.03773 6.17089 6.30278 6.32038 6.39634 6.77085 6.81318 7.38210 7.63475 7.69736 8.07239 8.40570 9.51798 10.08781 10.43361 11.44666 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042762 B = 0.002128 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.634189 B =13152.201897 C =13634.021437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.121 3.879 13 N -0.724 5.724 14 C 0.522 3.478 15 O -0.538 6.538 16 C -0.110 4.110 17 H 0.113 0.887 18 C -0.064 4.064 19 C -0.144 4.144 20 C -0.064 4.064 21 C -0.174 4.174 22 C 0.101 3.899 23 N -0.478 5.478 24 C 0.120 3.880 25 C -0.060 4.060 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.402 0.598 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.096 0.904 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -29.221 1.259 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.374 5.374 14 C 0.307 3.693 15 O -0.415 6.415 16 C -0.132 4.132 17 H 0.131 0.869 18 C -0.102 4.102 19 C -0.146 4.146 20 C -0.090 4.090 21 C -0.194 4.194 22 C -0.057 4.057 23 N -0.187 5.187 24 C -0.018 4.018 25 C -0.099 4.099 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.237 0.763 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.175 0.825 40 H 0.114 0.886 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.761 -28.716 1.723 28.900 hybrid contribution 0.151 0.395 -0.422 0.598 sum -2.611 -28.321 1.300 28.470 Atomic orbital electron populations 1.69667 1.05130 1.25587 1.57899 1.24762 0.95574 0.97787 1.03018 0.86092 0.78806 0.83971 0.77186 1.20506 1.21844 1.21837 1.19292 0.91143 0.84109 1.42528 0.91027 1.42346 1.05875 0.99996 1.89600 1.20521 0.93272 0.85202 0.98212 1.21949 0.99587 0.93290 1.02791 1.21393 0.91732 0.84562 1.02549 1.46076 1.10915 1.05685 1.74771 1.20174 0.89240 0.83758 0.76138 1.90712 1.16671 1.84617 1.49481 1.22009 0.97100 0.94098 1.00006 0.86936 1.20855 0.98526 0.90737 1.00055 1.21473 0.98755 0.94423 0.99974 1.21081 0.97571 0.93475 0.96882 1.22087 0.97220 1.01493 0.98570 1.22651 0.97475 0.88182 0.97362 1.66849 1.22060 1.12791 1.16970 1.21792 0.91224 0.96485 0.92282 1.20975 1.01117 0.91128 0.96641 0.93543 0.78292 0.96049 0.96060 0.91244 0.91227 0.91269 0.91245 0.76337 0.89726 0.87819 0.84847 0.84491 0.82507 0.88589 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.56 5.60 -59.91 -0.34 -18.90 16 10 C 0.16 3.07 6.26 -4.04 -0.03 3.04 16 11 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16 12 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 13 N -0.72 -7.57 5.54 -60.29 -0.33 -7.90 16 14 C 0.52 5.85 7.05 -10.98 -0.08 5.77 16 15 O -0.54 -8.10 15.53 5.55 0.09 -8.01 16 16 C -0.11 -0.90 3.46 -90.35 -0.31 -1.21 16 17 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.06 -0.54 6.09 -26.91 -0.16 -0.71 16 19 C -0.14 -1.28 6.16 -104.21 -0.64 -1.92 16 20 C -0.06 -0.48 10.17 -39.27 -0.40 -0.87 16 21 C -0.17 -1.16 10.12 -39.46 -0.40 -1.56 16 22 C 0.10 0.81 11.18 -17.62 -0.20 0.62 16 23 N -0.48 -5.11 10.35 -9.09 -0.09 -5.20 16 24 C 0.12 1.19 7.33 -81.88 -0.60 0.59 16 25 C -0.06 -0.50 6.32 -26.64 -0.17 -0.67 16 26 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 3.22 8.47 -40.82 -0.35 2.87 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 1.04 7.02 -51.93 -0.36 0.68 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.10 0.85 7.89 -51.93 -0.41 0.44 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -34.58 346.33 -9.21 -43.78 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.05 Total: 6.11 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.40 Total: -5.02 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.04 Total: -59.55 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.58 -9.21 -43.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174746050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.814 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds