Wall clock time and date at job start Tue Mar 31 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48506 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47072 * 299.99433 * 3 2 1 6 6 H 1.48497 * 109.47321 * 60.00176 * 3 2 1 7 7 C 1.38811 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00034 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47273 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47555 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 H 1.08993 * 110.72788 * 59.01945 * 16 14 13 18 18 C 1.54369 * 110.82251 * 182.43022 * 16 14 13 19 19 C 1.51220 * 105.12223 * 144.51051 * 18 16 14 20 20 C 1.38739 * 130.69717 * 162.91690 * 19 18 16 21 21 C 1.38576 * 118.55824 * 180.02562 * 20 19 18 22 22 C 1.38219 * 118.99052 * 359.97438 * 21 20 19 23 23 N 1.31690 * 120.80324 * 359.97438 * 22 21 20 24 24 C 1.32292 * 122.02949 * 0.02562 * 23 22 21 25 25 C 1.51782 * 130.06279 * 179.85705 * 24 23 22 26 26 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 27 27 H 0.97005 * 120.00160 * 0.02562 * 9 7 2 28 28 H 1.08992 * 109.47032 * 60.00622 * 10 9 7 29 29 H 1.08997 * 109.47284 * 300.00186 * 10 9 7 30 30 H 1.08998 * 109.47307 * 59.99732 * 11 10 9 31 31 H 1.09005 * 109.46653 * 299.99667 * 11 10 9 32 32 H 1.08998 * 109.47382 * 59.99521 * 12 11 10 33 33 H 1.09002 * 109.47216 * 299.99958 * 12 11 10 34 34 H 0.97000 * 119.99484 * 359.97438 * 13 12 11 35 35 H 1.09007 * 110.30671 * 263.41968 * 18 16 14 36 36 H 1.09001 * 110.31327 * 25.49640 * 18 16 14 37 37 H 1.08002 * 120.72082 * 359.97092 * 20 19 18 38 38 H 1.08000 * 120.50284 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.60279 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.25128 * 78.27683 * 25 24 23 41 41 H 1.09004 * 110.48688 * 316.05071 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8289 -6.1447 -0.0005 13 7 0.8769 -7.2583 -0.0005 14 6 1.3262 -8.5289 0.0005 15 8 2.5186 -8.7505 0.0010 16 6 0.3469 -9.6744 -0.0058 17 1 -0.2980 -9.6257 -0.8830 18 6 1.0857 -11.0283 0.0579 19 6 0.2001 -11.9219 0.8969 20 6 0.1799 -13.3022 1.0360 21 6 -0.7551 -13.8685 1.8877 22 6 -1.6306 -13.0418 2.5662 23 7 -1.5821 -11.7351 2.4105 24 6 -0.7047 -11.1564 1.6072 25 6 -0.4900 -9.6874 1.2910 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 2.6847 -3.7145 0.8894 29 1 2.6848 -3.7145 -0.8905 30 1 0.4376 -4.7617 -0.8913 31 1 0.4370 -4.7621 0.8887 32 1 2.4550 -6.2024 0.8898 33 1 2.4562 -6.2025 -0.8901 34 1 -0.0767 -7.0810 -0.0005 35 1 1.2020 -11.4432 -0.9434 36 1 2.0598 -10.9060 0.5316 37 1 0.8772 -13.9218 0.4917 38 1 -0.7989 -14.9396 2.0193 39 1 -2.3636 -13.4727 3.2322 40 1 0.0577 -9.2035 2.0997 41 1 -1.4456 -9.1885 1.1290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174746050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:22 Heat of formation + Delta-G solvation = -25.823134 kcal Electronic energy + Delta-G solvation = -21319.954325 eV Core-core repulsion = 18005.282819 eV Total energy + Delta-G solvation = -3314.671506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92637 -40.58417 -37.63104 -36.87981 -35.91048 -33.80775 -33.54952 -31.57357 -30.35981 -28.80835 -27.13418 -25.36699 -24.08767 -22.82026 -22.57889 -22.54274 -20.88053 -19.19182 -18.31034 -17.68301 -17.34404 -17.09084 -16.74666 -16.49016 -15.93129 -15.82838 -15.40383 -15.28872 -14.98760 -14.53176 -14.34989 -13.95922 -13.86893 -13.74068 -13.46825 -13.30864 -12.84777 -12.71035 -12.56919 -12.43985 -12.38199 -12.27246 -12.03681 -12.03206 -11.78805 -10.95795 -10.94174 -10.68609 -10.28104 -10.11265 -9.68136 -9.01851 -7.96992 -5.25991 0.12750 0.33180 1.47871 1.48404 1.55065 1.58776 2.10872 2.56027 2.79007 2.93520 3.37008 3.37281 3.63778 3.77771 3.81416 3.93705 4.06884 4.10246 4.19348 4.22868 4.30582 4.39912 4.48767 4.60042 4.67845 4.74236 4.74848 4.79207 4.80871 4.90191 4.98334 5.05291 5.22782 5.28201 5.30033 5.32983 5.43226 5.49195 5.77801 6.26083 6.52986 7.02715 7.20292 7.32442 8.07499 8.31040 9.26677 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042762 B = 0.002128 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.634189 B =13152.201897 C =13634.021437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.077 4.077 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.119 4.119 12 C 0.132 3.868 13 N -0.714 5.714 14 C 0.523 3.477 15 O -0.579 6.579 16 C -0.098 4.098 17 H 0.139 0.861 18 C -0.061 4.061 19 C -0.156 4.156 20 C -0.070 4.070 21 C -0.167 4.167 22 C 0.087 3.913 23 N -0.511 5.511 24 C 0.096 3.904 25 C -0.057 4.057 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.417 0.583 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.180 0.820 40 H 0.085 0.915 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -30.735 0.949 30.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.157 4.157 12 C 0.008 3.992 13 N -0.366 5.366 14 C 0.310 3.690 15 O -0.459 6.459 16 C -0.120 4.120 17 H 0.157 0.843 18 C -0.099 4.099 19 C -0.157 4.157 20 C -0.096 4.096 21 C -0.187 4.187 22 C -0.070 4.070 23 N -0.220 5.220 24 C -0.041 4.041 25 C -0.095 4.095 26 H 0.061 0.939 27 H 0.208 0.792 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.254 0.746 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.174 0.826 38 H 0.187 0.813 39 H 0.197 0.803 40 H 0.103 0.897 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.883 -30.256 1.412 30.426 hybrid contribution 0.208 0.742 -0.293 0.824 sum -2.676 -29.514 1.119 29.656 Atomic orbital electron populations 1.69809 1.06542 1.26116 1.59431 1.25595 0.96501 1.01180 1.03613 0.85054 0.78190 0.79649 0.76744 1.19136 1.21875 1.21922 1.19685 0.91576 0.85428 1.41298 0.90695 1.42556 1.05754 1.01183 1.89511 1.20693 0.94142 0.84794 0.97960 1.21705 0.98465 0.92210 1.03319 1.21101 0.91728 0.84404 1.01985 1.45931 1.11365 1.05007 1.74250 1.20658 0.89133 0.84304 0.74894 1.90698 1.18613 1.85190 1.51356 1.21970 0.96456 0.92469 1.01072 0.84291 1.20801 0.97498 0.90995 1.00599 1.21597 0.98705 0.95244 1.00203 1.21470 0.97997 0.93203 0.96937 1.22450 0.95983 1.02989 0.97245 1.23161 0.98293 0.87721 0.97814 1.66840 1.22993 1.14261 1.17897 1.22007 0.91917 0.97213 0.93005 1.20951 1.01580 0.90789 0.96179 0.93902 0.79217 0.96093 0.95963 0.90615 0.90783 0.92051 0.91761 0.74641 0.88336 0.89828 0.82588 0.81317 0.80324 0.89697 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 7 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -37.79 5.60 -343.46 -1.92 -39.71 16 10 C 0.15 5.87 6.26 86.38 0.54 6.41 16 11 C -0.12 -3.38 5.44 30.59 0.17 -3.21 16 12 C 0.13 3.29 5.67 86.38 0.49 3.78 16 13 N -0.71 -14.02 5.54 -463.06 -2.56 -16.59 16 14 C 0.52 11.29 7.05 87.66 0.62 11.91 16 15 O -0.58 -17.41 15.53 -3.04 -0.05 -17.46 16 16 C -0.10 -1.47 3.46 -10.62 -0.04 -1.51 16 17 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 18 C -0.06 -0.98 6.09 30.48 0.19 -0.80 16 19 C -0.16 -2.60 6.16 -19.59 -0.12 -2.72 16 20 C -0.07 -0.90 10.17 22.47 0.23 -0.68 16 21 C -0.17 -1.84 10.12 22.35 0.23 -1.61 16 22 C 0.09 1.28 11.18 84.71 0.95 2.22 16 23 N -0.51 -10.57 10.35 -182.68 -1.89 -12.46 16 24 C 0.10 1.84 7.33 42.82 0.31 2.16 16 25 C -0.06 -0.90 6.32 30.65 0.19 -0.70 16 26 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 27 H 0.38 19.87 7.67 -92.70 -0.71 19.16 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.42 5.87 8.47 -92.71 -0.79 5.08 16 35 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 1.70 7.02 -2.39 -0.02 1.69 16 37 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 39 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.08 1.50 7.89 -2.39 -0.02 1.48 16 41 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -74.50 346.33 0.49 -74.01 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.45 Total: 24.55 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.06 Total: -1.82 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -6.10 Total: -127.51 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.05 Total: -17.46 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.50 0.49 -74.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174746050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.188 kcal (2) G-P(sol) polarization free energy of solvation -74.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds