Wall clock time and date at job start Tue Mar 31 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35729 * 116.99994 * 2 1 4 4 N 1.32225 * 119.69517 * 0.02562 * 3 2 1 5 5 C 1.31963 * 121.67260 * 179.97438 * 4 3 2 6 6 S 1.76199 * 119.56229 * 180.02562 * 5 4 3 7 7 O 1.42095 * 106.40227 * 336.45689 * 6 5 4 8 8 O 1.42107 * 106.40094 * 203.54106 * 6 5 4 9 9 N 1.65593 * 107.21807 * 89.99944 * 6 5 4 10 10 C 1.46506 * 120.00245 * 65.00204 * 9 6 5 11 11 C 1.50703 * 109.47289 * 164.99838 * 10 9 6 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 C 1.38069 * 120.87838 * 0.27802 * 5 4 3 20 20 C 1.38800 * 119.30421 * 359.43330 * 19 5 4 21 21 C 1.38571 * 118.46554 * 0.54936 * 20 19 5 22 22 F 1.35097 * 120.46548 * 179.71145 * 21 20 19 23 23 H 1.09004 * 109.47194 * 299.99851 * 1 2 3 24 24 H 1.08999 * 109.47618 * 59.99999 * 1 2 3 25 25 H 1.08998 * 109.47200 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00411 * 244.99876 * 9 6 5 27 27 H 1.09001 * 109.47060 * 285.00288 * 10 9 6 28 28 H 1.09004 * 109.47073 * 44.99777 * 10 9 6 29 29 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 30 30 H 1.08002 * 120.34728 * 179.70574 * 19 5 4 31 31 H 1.07997 * 120.76395 * 180.28747 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 7 1.3191 2.3144 0.0005 5 6 1.8772 3.5102 0.0010 6 16 0.8562 4.9462 0.0024 7 8 -0.3950 4.5494 -0.5418 8 8 1.6420 5.9978 -0.5418 9 7 0.5728 5.3446 1.5845 10 6 1.6814 5.7698 2.4428 11 6 1.1328 6.4166 3.6885 12 1 0.0652 6.5019 3.8272 13 6 1.9939 6.8983 4.6515 14 7 3.2940 6.7938 4.4827 15 14 1.3139 7.7006 6.1953 16 1 -0.1700 7.6950 6.1436 17 1 1.7701 6.9434 7.3886 18 1 1.8014 9.1007 6.2814 19 6 3.2507 3.6511 -0.0047 20 6 4.0500 2.5164 0.0009 21 6 3.4345 1.2749 0.0004 22 9 4.1735 0.1439 -0.0001 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3272 5.2966 1.9431 27 1 2.2814 4.9023 2.7177 28 1 2.3031 6.4859 1.9052 29 1 3.8998 7.1331 5.1601 30 1 3.6984 4.6339 -0.0090 31 1 5.1268 2.5992 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190058449.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:25 Heat of formation + Delta-G solvation = -143.398992 kcal Electronic energy + Delta-G solvation = -21001.100419 eV Core-core repulsion = 17323.929237 eV Total energy + Delta-G solvation = -3677.171183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.27992 -41.80404 -39.21204 -38.38161 -37.03316 -36.51547 -34.14325 -33.73501 -32.05383 -28.74100 -28.53118 -25.35254 -24.71210 -24.43670 -21.08754 -19.93692 -19.28324 -19.17855 -18.72083 -17.96302 -17.77168 -17.58292 -17.13644 -16.38622 -16.37554 -15.91368 -15.38705 -15.09791 -14.85861 -14.69955 -14.47217 -14.24219 -14.06913 -13.60989 -13.31024 -13.20044 -13.00881 -12.78802 -12.70102 -12.51754 -12.47356 -12.09907 -11.40368 -11.24708 -11.20766 -10.84747 -10.16440 -9.95342 -8.24452 -6.35203 -0.97001 -0.65864 -0.22144 1.45689 1.47796 1.59133 1.65127 1.79111 2.10410 2.43065 2.60887 2.71156 2.77936 3.11580 3.34265 3.61639 3.81931 3.97443 4.28809 4.35335 4.41646 4.50910 4.55690 4.69174 4.98408 5.25806 5.30788 5.75288 5.78656 5.96129 6.06275 6.27500 6.77802 7.34291 8.86690 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017657 B = 0.005074 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.381509 B = 5517.433323 C = 5962.448055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.264 3.736 4 N -0.441 5.441 5 C -0.429 4.429 6 S 2.720 3.280 7 O -0.969 6.969 8 O -0.967 6.967 9 N -1.095 6.095 10 C 0.253 3.747 11 C -0.549 4.549 12 H 0.074 0.926 13 C 0.011 3.989 14 N -0.923 5.923 15 Si 0.969 3.031 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.087 4.087 20 C -0.074 4.074 21 C 0.082 3.918 22 F -0.112 7.112 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.136 0.864 26 H 0.421 0.579 27 H 0.013 0.987 28 H 0.025 0.975 29 H 0.269 0.731 30 H 0.181 0.819 31 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 -10.958 -7.833 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.214 6.214 3 C 0.078 3.922 4 N -0.166 5.166 5 C -0.646 4.646 6 S 2.805 3.195 7 O -0.959 6.959 8 O -0.957 6.957 9 N -0.858 5.858 10 C 0.129 3.871 11 C -0.588 4.588 12 H 0.092 0.908 13 C -0.189 4.189 14 N -0.562 5.562 15 Si 0.794 3.206 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.109 4.109 20 C -0.100 4.100 21 C 0.059 3.941 22 F -0.091 7.091 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.154 0.846 26 H 0.257 0.743 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.199 0.801 31 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.944 -10.871 -8.572 13.876 hybrid contribution 0.677 -0.275 1.267 1.463 sum -0.266 -11.146 -7.305 13.329 Atomic orbital electron populations 1.23271 0.74866 1.05585 1.02878 1.86289 1.25142 1.22175 1.87766 1.20316 0.88953 0.86542 0.96366 1.67413 1.38664 0.97030 1.13453 1.33375 1.08152 1.12184 1.10850 1.01292 0.72693 0.72768 0.72738 1.93520 1.41487 1.83540 1.77330 1.93589 1.72541 1.51998 1.77526 1.55272 1.18304 1.82072 1.30200 1.18821 0.84298 0.94321 0.89702 1.21627 0.94213 1.39447 1.03531 0.90813 1.25808 0.95077 0.96274 1.01728 1.70027 1.02900 1.46858 1.36378 0.85338 0.78920 0.77947 0.78436 1.18690 1.20499 1.20490 1.22170 0.91897 1.02569 0.94276 1.22070 1.04215 0.88047 0.95711 1.17980 0.86439 0.84457 1.05257 1.91565 1.75727 1.48337 1.93424 0.92261 0.91968 0.84633 0.74258 0.96876 0.95665 0.92220 0.80133 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.38 113.37 1.18 1.78 16 2 O -0.31 -8.36 10.35 -90.52 -0.94 -9.30 16 3 C 0.26 7.94 7.50 84.84 0.64 8.57 16 4 N -0.44 -14.56 8.97 -306.22 -2.75 -17.31 16 5 C -0.43 -14.17 6.83 84.63 0.58 -13.60 16 6 S 2.72 98.50 5.80 -56.49 -0.33 98.17 16 7 O -0.97 -37.42 17.85 -128.00 -2.28 -39.70 16 8 O -0.97 -38.36 16.71 -128.00 -2.14 -40.50 16 9 N -1.10 -42.64 5.99 -190.77 -1.14 -43.79 16 10 C 0.25 11.92 5.98 85.63 0.51 12.43 16 11 C -0.55 -28.20 9.27 25.60 0.24 -27.96 16 12 H 0.07 3.60 7.65 -2.91 -0.02 3.58 16 13 C 0.01 0.60 5.46 84.65 0.46 1.06 16 14 N -0.92 -50.65 13.29 21.45 0.28 -50.37 16 15 Si 0.97 40.98 29.54 68.60 2.03 43.00 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 19 C -0.09 -2.45 9.55 22.36 0.21 -2.24 16 20 C -0.07 -1.70 10.16 22.48 0.23 -1.47 16 21 C 0.08 2.15 7.35 22.56 0.17 2.32 16 22 F -0.11 -2.80 17.13 44.97 0.77 -2.03 16 23 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 24 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 25 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.42 14.99 8.54 -96.75 -0.83 14.17 16 27 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.03 1.27 7.75 -2.38 -0.02 1.26 16 29 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.18 4.63 7.59 -2.91 -0.02 4.60 16 31 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -66.08 299.81 -1.92 -68.00 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.36 Total: 12.92 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.21 Total: -19.11 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -3.60 Total: -111.46 kcal Atomic # 8 Polarization: -84.14 SS G_CDS: -5.36 Total: -89.50 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.77 Total: -2.03 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 98.50 SS G_CDS: -0.33 Total: 98.17 kcal Total: -66.08 -1.92 -68.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190058449.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.399 kcal (2) G-P(sol) polarization free energy of solvation -66.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds