Wall clock time and date at job start Tue Mar 31 2020 03:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35728 * 116.99926 * 2 1 4 4 N 1.32218 * 119.70112 * 359.97438 * 3 2 1 5 5 C 1.31957 * 121.67840 * 179.97438 * 4 3 2 6 6 S 1.76198 * 119.56342 * 180.02562 * 5 4 3 7 7 O 1.42100 * 106.40158 * 203.54230 * 6 5 4 8 8 O 1.42092 * 106.40186 * 336.46140 * 6 5 4 9 9 N 1.65599 * 107.21944 * 90.00059 * 6 5 4 10 10 C 1.46501 * 120.00038 * 270.00178 * 9 6 5 11 11 C 1.36941 * 120.00020 * 90.00004 * 9 6 5 12 12 H 1.08002 * 119.99800 * 22.31636 * 11 9 6 13 13 C 1.38810 * 119.99868 * 202.31944 * 11 9 6 14 14 N 1.31615 * 120.00265 * 11.14156 * 13 11 9 15 15 Si 1.86801 * 119.99786 * 191.14589 * 13 11 9 16 16 H 1.48498 * 109.47389 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47134 * 119.99708 * 15 13 11 18 18 H 1.48500 * 109.47211 * 239.99846 * 15 13 11 19 19 C 1.38058 * 120.87750 * 0.02562 * 5 4 3 20 20 C 1.38798 * 119.30634 * 359.74045 * 19 5 4 21 21 C 1.38578 * 118.46314 * 0.52320 * 20 19 5 22 22 F 1.35101 * 120.46180 * 179.73058 * 21 20 19 23 23 H 1.08998 * 109.47438 * 299.99904 * 1 2 3 24 24 H 1.08998 * 109.47214 * 60.00098 * 1 2 3 25 25 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47121 * 94.21932 * 10 9 6 27 27 H 1.08996 * 109.46929 * 214.21295 * 10 9 6 28 28 H 1.08992 * 109.47085 * 334.21426 * 10 9 6 29 29 H 0.97002 * 120.00262 * 180.02562 * 14 13 11 30 30 H 1.08005 * 120.35018 * 180.02562 * 19 5 4 31 31 H 1.08005 * 120.77177 * 180.25888 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 7 1.3192 2.3144 -0.0005 5 6 1.8774 3.5102 0.0000 6 16 0.8563 4.9462 -0.0001 7 8 1.6425 5.9975 -0.5440 8 8 -0.3944 4.5491 -0.5450 9 7 0.5717 5.3453 1.5817 10 6 -0.5882 4.7866 2.2808 11 6 1.4205 6.1976 2.2362 12 1 2.0401 6.8803 1.6735 13 6 1.4846 6.1841 3.6227 14 7 0.9037 5.2158 4.2990 15 14 2.3953 7.5402 4.5289 16 1 2.9565 8.5018 3.5463 17 1 1.4551 8.2487 5.4339 18 1 3.4988 6.9479 5.3268 19 6 3.2507 3.6510 0.0005 20 6 4.0501 2.5163 0.0060 21 6 3.4345 1.2748 -0.0003 22 9 4.1735 0.1439 -0.0008 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.2891 3.8879 2.8202 27 1 -0.9758 5.5216 2.9863 28 1 -1.3625 4.5348 1.5563 29 1 0.9482 5.2065 5.2680 30 1 3.6985 4.6339 0.0013 31 1 5.1269 2.5990 0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190079999.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:22 Heat of formation + Delta-G solvation = -125.324075 kcal Electronic energy + Delta-G solvation = -21673.063687 eV Core-core repulsion = 17996.676292 eV Total energy + Delta-G solvation = -3676.387396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.16178 -41.58057 -39.05458 -37.74597 -37.60416 -36.35235 -33.49948 -33.44739 -31.76002 -28.45330 -28.36675 -25.45467 -24.99489 -24.44508 -20.61362 -19.94045 -19.17789 -18.89958 -18.59903 -18.18773 -17.64687 -17.44165 -16.52241 -16.31596 -16.13673 -15.82265 -15.18113 -14.93517 -14.82236 -14.48938 -14.35582 -14.04798 -13.68901 -13.22330 -12.99440 -12.90631 -12.69010 -12.67469 -12.43091 -12.32602 -12.27010 -12.13309 -11.85144 -11.19482 -11.06601 -10.86783 -10.06347 -9.75172 -8.47444 -6.00641 -0.64227 -0.15683 -0.04945 1.53897 1.56918 1.69941 1.77400 2.08777 2.29631 2.60942 2.86391 2.88621 3.03129 3.24086 3.52329 3.95726 4.06321 4.20462 4.33130 4.35609 4.56289 4.58583 4.65224 4.67758 4.99986 5.13938 5.21257 5.30433 5.51943 5.90620 6.32093 6.38302 6.67739 7.15046 8.47719 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017984 B = 0.006447 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.562139 B = 4341.892146 C = 4658.408024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.312 6.312 3 C 0.253 3.747 4 N -0.454 5.454 5 C -0.414 4.414 6 S 2.515 3.485 7 O -0.997 6.997 8 O -1.007 7.007 9 N -0.798 5.798 10 C 0.130 3.870 11 C -0.253 4.253 12 H 0.124 0.876 13 C 0.000 4.000 14 N -0.843 5.843 15 Si 0.995 3.005 16 H -0.253 1.253 17 H -0.270 1.270 18 H -0.272 1.272 19 C -0.108 4.108 20 C -0.077 4.077 21 C 0.050 3.950 22 F -0.120 7.120 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.137 0.863 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.285 0.715 30 H 0.174 0.826 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 -4.476 -0.645 6.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.219 6.219 3 C 0.069 3.931 4 N -0.178 5.178 5 C -0.624 4.624 6 S 2.612 3.388 7 O -0.986 6.986 8 O -0.997 6.997 9 N -0.622 5.622 10 C -0.016 4.016 11 C -0.405 4.405 12 H 0.141 0.859 13 C -0.213 4.213 14 N -0.482 5.482 15 Si 0.816 3.184 16 H -0.176 1.176 17 H -0.195 1.195 18 H -0.197 1.197 19 C -0.129 4.129 20 C -0.103 4.103 21 C 0.028 3.972 22 F -0.099 7.099 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.155 0.845 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.191 0.809 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.875 -4.746 -1.537 5.758 hybrid contribution 1.355 -0.511 0.655 1.589 sum 4.230 -5.256 -0.882 6.804 Atomic orbital electron populations 1.23170 0.75322 1.05230 1.02414 1.86235 1.24814 1.22780 1.88116 1.20530 0.89072 0.86904 0.96593 1.67563 1.38850 0.97393 1.14008 1.35289 1.09403 1.13454 1.04260 1.13272 0.73300 0.73599 0.78625 1.93316 1.71279 1.53919 1.80055 1.93283 1.42892 1.83460 1.80031 1.54526 1.28368 1.45735 1.33525 1.21283 0.85477 0.99288 0.95514 1.20564 1.21498 1.07477 0.90936 0.85889 1.26680 0.96941 0.99932 0.97712 1.70183 1.37836 1.30605 1.09606 0.84819 0.77936 0.77425 0.78196 1.17642 1.19464 1.19736 1.22037 0.92358 1.01639 0.96837 1.22032 1.03708 0.88368 0.96196 1.17902 0.86389 0.84370 1.08557 1.91513 1.75814 1.48558 1.93981 0.92785 0.92656 0.84461 0.93845 0.90539 0.92844 0.90420 0.80865 0.78100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.38 113.37 1.18 2.13 16 2 O -0.31 -10.92 10.35 -90.51 -0.94 -11.85 16 3 C 0.25 9.81 7.50 84.84 0.64 10.44 16 4 N -0.45 -19.60 8.96 -306.25 -2.75 -22.35 16 5 C -0.41 -17.91 6.86 84.63 0.58 -17.33 16 6 S 2.52 118.84 5.71 -56.49 -0.32 118.52 16 7 O -1.00 -48.88 16.04 -128.00 -2.05 -50.93 16 8 O -1.01 -51.73 16.41 -128.00 -2.10 -53.83 16 9 N -0.80 -37.60 3.31 -364.91 -1.21 -38.80 16 10 C 0.13 5.83 8.92 127.77 1.14 6.97 16 11 C -0.25 -11.72 9.44 84.03 0.79 -10.93 16 12 H 0.12 5.54 7.16 -2.91 -0.02 5.52 16 13 C 0.00 -0.01 5.13 84.86 0.44 0.42 16 14 N -0.84 -38.22 10.57 21.65 0.23 -37.99 16 15 Si 1.00 34.01 29.57 68.60 2.03 36.03 16 16 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 17 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 18 H -0.27 -9.12 7.11 99.48 0.71 -8.42 16 19 C -0.11 -3.89 9.55 22.36 0.21 -3.68 16 20 C -0.08 -2.31 10.16 22.48 0.23 -2.08 16 21 C 0.05 1.72 7.35 22.56 0.17 1.89 16 22 F -0.12 -3.78 17.13 44.97 0.77 -3.01 16 23 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 24 H 0.05 1.66 8.10 -2.39 -0.02 1.65 16 25 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.04 1.99 7.42 -2.39 -0.02 1.98 16 27 H 0.08 3.36 7.18 -2.39 -0.02 3.34 16 28 H 0.05 2.30 6.93 -2.39 -0.02 2.28 16 29 H 0.29 11.90 8.31 -92.71 -0.77 11.13 16 30 H 0.17 5.66 7.60 -2.91 -0.02 5.64 16 31 H 0.20 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -61.16 291.67 0.21 -60.96 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.17 Total: 15.42 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.37 Total: -12.17 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -3.72 Total: -99.14 kcal Atomic # 8 Polarization: -111.53 SS G_CDS: -5.09 Total: -116.62 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.77 Total: -3.01 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.03 kcal Atomic # 16 Polarization: 118.84 SS G_CDS: -0.32 Total: 118.52 kcal Total: -61.16 0.21 -60.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190079999.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.365 kcal (2) G-P(sol) polarization free energy of solvation -61.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds